Wall clock time and date at job start Sun Mar 29 2020 23:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39872 * 125.89613 * 2 1 4 4 C 1.35314 * 107.91954 * 180.14407 * 3 2 1 5 5 C 1.50703 * 126.12759 * 179.90471 * 4 3 2 6 6 N 1.34949 * 107.74826 * 359.63758 * 4 3 2 7 7 C 1.46492 * 126.04227 * 180.20931 * 6 4 3 8 8 C 1.53001 * 109.47510 * 89.99746 * 7 6 4 9 9 S 1.81396 * 109.47581 * 180.02562 * 8 7 6 10 10 C 1.81394 * 103.00124 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47350 * 180.02562 * 10 9 8 12 12 H 1.08006 * 119.99972 * 0.02562 * 11 10 9 13 13 C 1.37879 * 120.00157 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99943 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99817 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47101 * 90.00364 * 15 13 11 17 17 H 1.48501 * 109.46991 * 210.00502 * 15 13 11 18 18 H 1.48503 * 109.47031 * 329.99989 * 15 13 11 19 19 N 1.30835 * 125.89924 * 179.73974 * 2 1 3 20 20 H 1.08996 * 109.47154 * 270.23207 * 1 2 3 21 21 H 1.09001 * 109.47360 * 30.23828 * 1 2 3 22 22 H 1.08999 * 109.46997 * 150.23794 * 1 2 3 23 23 H 1.08000 * 126.03890 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47152 * 269.68517 * 5 4 3 25 25 H 1.09001 * 109.46980 * 149.68618 * 5 4 3 26 26 H 1.09004 * 109.47113 * 29.68598 * 5 4 3 27 27 H 1.09001 * 109.47504 * 210.00369 * 7 6 4 28 28 H 1.09010 * 109.47188 * 330.00050 * 7 6 4 29 29 H 1.09001 * 109.47246 * 300.00781 * 8 7 6 30 30 H 1.09010 * 109.46647 * 59.99972 * 8 7 6 31 31 H 1.09008 * 109.47400 * 300.00040 * 10 9 8 32 32 H 1.09001 * 109.47371 * 59.99799 * 10 9 8 33 33 H 0.96993 * 119.99534 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0032 5 6 4.8350 1.5991 -0.0064 6 7 3.6088 -0.6340 0.0029 7 6 4.7899 -1.5006 0.0065 8 6 5.2017 -1.7958 1.4502 9 16 6.6646 -2.8683 1.4546 10 6 6.9938 -3.1023 3.2230 11 6 8.2018 -3.9864 3.3965 12 1 8.7200 -4.3689 2.5296 13 6 8.6461 -4.3061 4.6620 14 7 8.0153 -3.8399 5.7177 15 14 10.1439 -5.4014 4.8770 16 1 11.3677 -4.5619 4.9291 17 1 10.0172 -6.1708 6.1408 18 1 10.2375 -6.3424 3.7319 19 7 2.2742 -1.0598 0.0048 20 1 -0.3633 0.0042 1.0276 21 1 -0.3634 0.8878 -0.5175 22 1 -0.3633 -0.8921 -0.5101 23 1 1.9922 2.1598 0.0004 24 1 5.1300 1.8074 -1.0349 25 1 5.6508 1.0934 0.5102 26 1 4.6072 2.5354 0.5030 27 1 4.5563 -2.4354 -0.5031 28 1 5.6093 -1.0003 -0.5100 29 1 5.4354 -0.8610 1.9597 30 1 4.3824 -2.2961 1.9666 31 1 7.1821 -2.1348 3.6887 32 1 6.1297 -3.5704 3.6946 33 1 8.3277 -4.0651 6.6079 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413021659.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:52 Heat of formation + Delta-G solvation = 52.552445 kcal Electronic energy + Delta-G solvation = -14237.310847 eV Core-core repulsion = 11811.288210 eV Total energy + Delta-G solvation = -2426.022637 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 240.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23570 -34.84695 -33.19970 -32.36214 -30.72653 -28.61492 -27.54393 -26.95971 -23.66058 -22.58974 -20.36836 -19.23128 -16.74149 -16.53947 -15.60528 -15.02148 -14.95557 -14.46707 -13.86262 -13.50511 -13.41261 -13.15953 -13.05967 -12.58052 -12.47416 -12.32949 -12.26076 -11.88573 -11.82767 -11.31415 -10.90072 -10.74233 -10.44602 -10.08841 -9.66142 -9.03373 -8.98754 -8.66118 -8.45841 -6.82681 -6.23955 -4.28966 1.84488 2.16233 2.78913 2.92858 3.23612 3.29429 3.34576 3.72486 4.31725 4.52182 4.59843 4.93065 4.96915 5.04372 5.13268 5.28422 5.37807 5.38150 5.53719 5.57775 5.65498 5.71528 5.80851 5.91040 6.03781 6.22919 6.72747 7.01673 7.04599 7.07837 7.70031 7.81604 7.94359 8.72791 9.34541 10.87357 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.046899 B = 0.004107 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.889026 B = 6815.375919 C = 6959.296333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.066 3.934 3 C -0.279 4.279 4 C 0.088 3.912 5 C -0.096 4.096 6 N -0.363 5.363 7 C 0.153 3.847 8 C -0.110 4.110 9 S -0.293 6.293 10 C 0.095 3.905 11 C -0.514 4.514 12 H 0.068 0.932 13 C 0.066 3.934 14 N -0.892 5.892 15 Si 0.908 3.092 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.270 1.270 19 N -0.294 5.294 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.143 0.857 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.781 10.593 -10.687 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 C -0.309 4.309 4 C -0.040 4.040 5 C -0.154 4.154 6 N -0.145 5.145 7 C 0.031 3.969 8 C -0.259 4.259 9 S -0.067 6.067 10 C -0.052 4.052 11 C -0.554 4.554 12 H 0.086 0.914 13 C -0.138 4.138 14 N -0.530 5.530 15 Si 0.735 3.265 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.195 1.195 19 N -0.117 5.117 20 H 0.093 0.907 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.161 0.839 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.079 8.821 -11.357 17.007 hybrid contribution 0.122 0.813 1.428 1.647 sum -8.958 9.634 -9.929 16.482 Atomic orbital electron populations 1.20136 0.86927 1.02970 1.02800 1.22300 0.96845 0.90914 0.99977 1.21062 0.90984 0.99565 1.19249 1.21157 0.97353 0.84815 1.00688 1.20498 0.93354 0.98262 1.03328 1.48717 1.05279 1.04050 1.56493 1.21445 0.83449 0.95266 0.96779 1.23588 1.01055 1.02727 0.98565 1.86524 1.34311 1.64349 1.21528 1.21076 1.00528 1.00400 0.83189 1.20662 1.11354 1.30569 0.92796 0.91356 1.24974 0.97475 0.96104 0.95290 1.69955 1.40214 1.44564 0.98294 0.86323 0.82075 0.80298 0.77806 1.20298 1.20928 1.19487 1.77348 0.86415 1.22714 1.25218 0.90700 0.90681 0.91097 0.83880 0.90193 0.90610 0.89670 0.87959 0.88209 0.90538 0.90035 0.94521 0.94478 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.45 36.01 0.38 -0.29 16 2 C 0.07 0.90 7.22 -82.40 -0.59 0.30 16 3 C -0.28 -3.52 10.65 -40.01 -0.43 -3.95 16 4 C 0.09 1.15 6.93 -82.26 -0.57 0.58 16 5 C -0.10 -0.92 9.90 36.01 0.36 -0.56 16 6 N -0.36 -5.48 3.61 -57.14 -0.21 -5.68 16 7 C 0.15 2.22 6.07 -4.05 -0.02 2.20 16 8 C -0.11 -1.90 6.26 37.16 0.23 -1.67 16 9 S -0.29 -6.19 21.66 -107.50 -2.33 -8.52 16 10 C 0.09 2.46 5.70 36.01 0.21 2.67 16 11 C -0.51 -14.43 9.13 -34.44 -0.31 -14.74 16 12 H 0.07 1.91 7.71 -52.48 -0.40 1.50 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 14 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 15 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 N -0.29 -4.79 12.58 33.67 0.42 -4.37 16 20 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.77 7.72 -51.93 -0.40 0.36 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.10 1.26 7.66 -51.92 -0.40 0.86 16 29 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 30 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 31 H 0.04 0.99 8.14 -51.92 -0.42 0.56 16 32 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 300.64 15.07 4.53 4.53 Total: -1.00 -31.07 300.64 -7.71 -38.78 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.99 Total: -2.00 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.86 Total: -13.74 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.95 Total: -35.27 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -6.19 SS G_CDS: -2.33 Total: -8.52 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.07 -7.71 -38.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413021659.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.333 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds