Wall clock time and date at job start Sun Mar 29 2020 22:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 F 1.39907 * 110.64355 * 83.69109 * 3 2 1 5 5 C 1.55161 * 110.87241 * 206.94006 * 3 2 1 6 6 C 1.55128 * 101.48565 * 82.76508 * 5 3 2 7 7 N 1.47421 * 104.72320 * 37.29831 * 6 5 3 8 8 C 1.34777 * 125.65212 * 155.81380 * 7 6 5 9 9 O 1.21278 * 120.00348 * 179.69223 * 8 7 6 10 10 C 1.50703 * 119.99618 * 359.69300 * 8 7 6 11 11 C 1.52999 * 109.47244 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47057 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00538 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99661 * 179.97438 * 12 11 10 15 15 N 1.31520 * 120.00186 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99863 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00044 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00037 * 16 14 12 20 20 C 1.47022 * 108.70147 * 335.55298 * 7 6 5 21 21 H 1.08999 * 111.00389 * 201.00687 * 5 3 2 22 22 H 1.09001 * 111.00374 * 324.81748 * 5 3 2 23 23 H 1.08995 * 110.49722 * 278.45224 * 6 5 3 24 24 H 1.08998 * 110.34057 * 156.06218 * 6 5 3 25 25 H 1.09002 * 109.47387 * 59.99847 * 10 8 7 26 26 H 1.08998 * 109.46985 * 299.99880 * 10 8 7 27 27 H 1.09002 * 109.46997 * 59.99677 * 11 10 8 28 28 H 1.09000 * 109.46625 * 300.00102 * 11 10 8 29 29 H 0.97001 * 119.99697 * 359.97438 * 15 14 12 30 30 H 1.09005 * 109.88668 * 120.70510 * 20 7 6 31 31 H 1.09001 * 109.88389 * 241.71419 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 9 3.1013 -0.1430 -1.3013 5 6 3.1602 1.2934 0.6568 6 6 3.0915 0.9282 2.1630 7 7 3.4538 -0.4997 2.2192 8 6 3.9687 -1.1380 3.2887 9 8 4.2250 -2.3216 3.2232 10 6 4.2260 -0.3809 4.5661 11 6 4.8066 -1.3320 5.6146 12 6 5.0633 -0.5750 6.8921 13 1 4.8355 0.4791 6.9503 14 6 5.5890 -1.2282 7.9866 15 7 5.8659 -2.5120 7.9159 16 14 5.9078 -0.2898 9.5700 17 1 4.6983 -0.3445 10.4300 18 1 6.2249 1.1255 9.2514 19 1 7.0536 -0.9044 10.2876 20 6 3.1545 -1.1136 0.9172 21 1 4.1869 1.4828 0.3437 22 1 2.5219 2.1483 0.4338 23 1 2.0825 1.0790 2.5466 24 1 3.8069 1.5237 2.7302 25 1 3.2898 0.0381 4.9350 26 1 4.9342 0.4252 4.3744 27 1 5.7428 -1.7513 5.2459 28 1 4.0981 -2.1377 5.8061 29 1 5.7000 -2.9993 7.0938 30 1 4.0638 -1.5344 0.4879 31 1 2.4060 -1.8964 1.0397 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589712643.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:36 Heat of formation + Delta-G solvation = -82.838642 kcal Electronic energy + Delta-G solvation = -16582.523438 eV Core-core repulsion = 13584.416627 eV Total energy + Delta-G solvation = -2998.106811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.23232 -41.20170 -38.96456 -37.37346 -35.93749 -33.28288 -32.25386 -30.37049 -27.46363 -25.40863 -23.85470 -23.47323 -20.42658 -19.84003 -19.09165 -18.11089 -17.19317 -16.96082 -16.47632 -16.18866 -15.67468 -15.59121 -15.10482 -15.04875 -14.67205 -14.26508 -14.16749 -13.86714 -13.76640 -13.50531 -13.45605 -12.95238 -12.66296 -12.42104 -12.11376 -12.01414 -11.98534 -11.82643 -11.05035 -10.67165 -10.53200 -9.88249 -8.66426 -6.38501 1.18683 1.22221 1.53227 1.56902 1.66772 1.67317 1.83761 2.14267 2.62012 2.85410 2.98483 3.20124 3.34584 3.77745 4.02650 4.14351 4.31221 4.35434 4.42106 4.56201 4.61111 4.73286 4.90578 4.97045 5.15038 5.33268 5.39193 5.95613 6.00582 6.17797 6.28283 6.54324 7.06521 7.47577 8.73635 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.048882 B = 0.004541 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.665151 B = 6164.958026 C = 6331.988058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.209 3.791 3 C 0.229 3.771 4 F -0.163 7.163 5 C -0.125 4.125 6 C 0.085 3.915 7 N -0.621 5.621 8 C 0.531 3.469 9 O -0.585 6.585 10 C -0.104 4.104 11 C 0.024 3.976 12 C -0.616 4.616 13 H 0.070 0.930 14 C -0.045 4.045 15 N -0.942 5.942 16 Si 1.126 2.874 17 H -0.274 1.274 18 H -0.258 1.258 19 H -0.288 1.288 20 C 0.090 3.910 21 H 0.136 0.864 22 H 0.134 0.866 23 H 0.085 0.915 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.113 0.887 27 H -0.018 1.018 28 H -0.023 1.023 29 H 0.252 0.748 30 H 0.105 0.895 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 13.138 -16.448 21.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.111 4.111 3 C 0.206 3.794 4 F -0.144 7.144 5 C -0.164 4.164 6 C -0.036 4.036 7 N -0.356 5.356 8 C 0.322 3.678 9 O -0.464 6.464 10 C -0.144 4.144 11 C -0.014 4.014 12 C -0.653 4.653 13 H 0.088 0.912 14 C -0.242 4.242 15 N -0.580 5.580 16 Si 0.946 3.054 17 H -0.200 1.200 18 H -0.182 1.182 19 H -0.214 1.214 20 C -0.034 4.034 21 H 0.154 0.846 22 H 0.153 0.847 23 H 0.103 0.897 24 H 0.137 0.863 25 H 0.121 0.879 26 H 0.131 0.869 27 H 0.000 1.000 28 H -0.005 1.005 29 H 0.061 0.939 30 H 0.124 0.876 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.022 12.319 -14.945 20.283 hybrid contribution -0.274 -0.845 -1.823 2.028 sum -6.297 11.474 -16.768 21.272 Atomic orbital electron populations 1.81267 1.13410 1.08154 1.06611 1.29088 0.94768 0.93328 0.93902 1.18605 0.79860 1.00729 0.80177 1.93027 1.87271 1.96933 1.37119 1.23636 1.06315 0.94193 0.92253 1.22841 1.03286 0.79713 0.97761 1.48423 1.63859 1.12212 1.11128 1.21076 0.75073 0.86869 0.84812 1.90677 1.53481 1.18244 1.84020 1.21492 1.03641 0.99216 0.90041 1.18906 0.93854 0.94464 0.94184 1.22508 1.46145 0.98073 0.98592 0.91190 1.27623 0.93220 0.96577 1.06782 1.70876 1.47488 1.09782 1.29818 0.82853 0.77045 0.74632 0.70874 1.19963 1.18172 1.21434 1.22365 1.02664 0.94574 0.83835 0.84596 0.84743 0.89696 0.86339 0.87853 0.86925 0.99971 1.00494 0.93914 0.87648 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -9.95 18.54 20.01 0.37 -9.58 16 2 C 0.21 3.85 14.10 89.44 1.26 5.11 16 3 C 0.23 3.19 1.60 -11.41 -0.02 3.18 16 4 F -0.16 -2.36 16.92 44.97 0.76 -1.60 16 5 C -0.13 -0.95 6.38 32.06 0.20 -0.75 16 6 C 0.09 1.14 6.50 86.93 0.57 1.70 16 7 N -0.62 -14.88 3.32 -811.37 -2.70 -17.58 16 8 C 0.53 19.14 7.85 87.66 0.69 19.82 16 9 O -0.58 -27.34 16.31 -3.02 -0.05 -27.39 16 10 C -0.10 -3.91 4.64 29.85 0.14 -3.77 16 11 C 0.02 1.26 3.57 29.85 0.11 1.36 16 12 C -0.62 -34.28 9.11 25.60 0.23 -34.05 16 13 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 14 C -0.05 -2.64 5.46 84.65 0.46 -2.18 16 15 N -0.94 -60.61 13.65 21.45 0.29 -60.32 16 16 Si 1.13 49.26 29.90 68.60 2.05 51.31 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 18 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 19 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 20 C 0.09 1.83 6.24 86.73 0.54 2.37 16 21 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 22 H 0.13 0.36 8.03 -2.39 -0.02 0.34 16 23 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.12 1.23 7.48 -2.39 -0.02 1.21 16 25 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 26 H 0.11 3.56 7.85 -2.39 -0.02 3.54 16 27 H -0.02 -1.08 7.97 -2.39 -0.02 -1.10 16 28 H -0.02 -1.41 7.96 -2.39 -0.02 -1.43 16 29 H 0.25 16.84 7.22 -92.71 -0.67 16.17 16 30 H 0.11 2.11 8.10 -2.38 -0.02 2.09 16 31 H 0.07 1.69 7.83 -2.39 -0.02 1.67 16 Total: -1.00 -79.29 280.03 6.15 -73.14 By element: Atomic # 1 Polarization: -2.03 SS G_CDS: 1.24 Total: -0.79 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 4.18 Total: -7.19 kcal Atomic # 7 Polarization: -85.45 SS G_CDS: -2.03 Total: -87.48 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.76 Total: -1.60 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Total: -79.29 6.15 -73.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589712643.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.703 kcal (2) G-P(sol) polarization free energy of solvation -79.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds