Wall clock time and date at job start Sun Mar 29 2020 22:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40078 * 126.03632 * 2 1 4 4 C 1.30835 * 108.20414 * 180.02562 * 3 2 1 5 5 C 1.39867 * 108.20391 * 359.78057 * 4 3 2 6 6 C 1.34942 * 126.03533 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.12730 * 359.94220 * 6 2 1 8 8 O 1.42903 * 109.46878 * 179.97438 * 7 6 2 9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47140 * 180.02562 * 9 8 7 11 11 O 1.21208 * 119.99924 * 359.97438 * 10 9 8 12 12 O 1.34310 * 120.00259 * 180.02562 * 10 9 8 13 13 C 1.34919 * 117.00158 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00122 * 359.97438 * 13 12 10 15 15 C 1.38757 * 120.00019 * 180.02562 * 13 12 10 16 16 N 1.31442 * 119.99801 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99976 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46781 * 90.00445 * 17 15 13 19 19 H 1.48499 * 109.47242 * 209.99891 * 17 15 13 20 20 H 1.48494 * 109.47417 * 330.00496 * 17 15 13 21 21 H 1.09004 * 109.46977 * 269.97506 * 1 2 3 22 22 H 1.09004 * 109.47012 * 29.96800 * 1 2 3 23 23 H 1.08994 * 109.47199 * 149.97712 * 1 2 3 24 24 H 1.08001 * 125.89995 * 180.02562 * 4 3 2 25 25 H 1.08002 * 126.04530 * 180.23700 * 5 4 3 26 26 H 1.09002 * 109.47060 * 299.99858 * 7 6 2 27 27 H 1.09001 * 109.47380 * 59.99945 * 7 6 2 28 28 H 1.09007 * 109.47484 * 299.99646 * 9 8 7 29 29 H 1.09004 * 109.47459 * 59.99983 * 9 8 7 30 30 H 0.96998 * 120.00226 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0042 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5258 0.0001 8 8 2.9339 -3.3919 -0.0013 9 6 2.6049 -4.7825 -0.0003 10 6 3.8719 -5.5984 -0.0013 11 8 4.9498 -5.0440 -0.0032 12 8 3.8068 -6.9399 -0.0011 13 6 4.9778 -7.6100 -0.0026 14 1 5.9111 -7.0665 -0.0042 15 6 4.9832 -8.9976 -0.0030 16 7 6.1240 -9.6504 -0.0049 17 14 3.3691 -9.9378 -0.0009 18 1 2.9393 -10.1865 -1.4004 19 1 3.5526 -11.2349 0.6984 20 1 2.3321 -9.1395 0.7008 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 4.4054 1.3710 -0.0003 25 1 4.4211 -1.2964 0.0086 26 1 1.1976 -2.7141 0.8906 27 1 1.1961 -2.7144 -0.8894 28 1 2.0226 -5.0175 0.8907 29 1 2.0199 -5.0182 -0.8893 30 1 6.1278 -10.6204 -0.0049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792502369.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:07 Heat of formation + Delta-G solvation = -33.362047 kcal Electronic energy + Delta-G solvation = -16336.083438 eV Core-core repulsion = 13327.749304 eV Total energy + Delta-G solvation = -3008.334134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.26836 -39.30867 -37.72034 -35.22565 -33.46588 -32.33338 -31.34517 -28.40910 -26.89017 -26.06404 -24.84915 -21.17872 -20.25494 -19.90896 -18.02324 -17.29741 -16.72201 -16.50831 -15.87875 -15.53357 -15.06646 -14.48639 -14.44427 -14.03860 -13.66021 -13.03852 -12.98966 -12.56188 -12.49783 -12.44028 -12.04380 -11.51193 -11.23496 -10.76004 -10.52498 -10.40865 -9.91895 -9.73468 -9.30230 -9.14295 -8.70432 -8.51456 -6.38370 -4.15028 1.74161 2.24269 2.84764 3.09467 3.12776 3.27773 3.34040 3.37270 4.21573 4.29536 4.39807 4.69209 4.85838 4.93841 5.04602 5.05860 5.10331 5.14863 5.26807 5.48496 5.63691 5.76227 6.13311 6.25173 6.67034 6.84794 7.05465 7.62514 7.69616 8.02512 8.60943 8.98822 9.63605 10.70074 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.055262 B = 0.004358 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.556295 B = 6422.816581 C = 6903.623261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.375 5.375 3 N -0.299 5.299 4 C 0.044 3.956 5 C -0.238 4.238 6 C 0.074 3.926 7 C 0.130 3.870 8 O -0.350 6.350 9 C 0.082 3.918 10 C 0.409 3.591 11 O -0.517 6.517 12 O -0.251 6.251 13 C -0.382 4.382 14 H 0.111 0.889 15 C 0.066 3.934 16 N -0.874 5.874 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.261 1.261 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.185 0.815 25 H 0.158 0.842 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 14.250 -0.028 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.160 5.160 3 N -0.120 5.120 4 C -0.141 4.141 5 C -0.267 4.267 6 C -0.052 4.052 7 C 0.052 3.948 8 O -0.268 6.268 9 C 0.005 3.995 10 C 0.253 3.747 11 O -0.409 6.409 12 O -0.161 6.161 13 C -0.457 4.457 14 H 0.128 0.872 15 C -0.137 4.137 16 N -0.513 5.513 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.185 1.185 21 H 0.092 0.908 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.202 0.798 25 H 0.176 0.824 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.595 15.242 -0.026 21.103 hybrid contribution -0.274 -1.321 -0.004 1.349 sum -14.869 13.921 -0.030 20.369 Atomic orbital electron populations 1.21847 0.74592 1.04418 1.03332 1.48354 1.06311 1.02947 1.58437 1.77337 1.02053 1.07266 1.25362 1.23925 0.95100 0.95317 0.99750 1.21449 0.97111 0.94528 1.13563 1.20539 0.91962 0.89403 1.03340 1.20557 0.88526 0.84518 1.01219 1.87981 1.28899 1.14438 1.95509 1.21538 0.94353 0.80644 1.03008 1.22339 0.90007 0.82678 0.79659 1.90639 1.30619 1.72023 1.47647 1.83463 1.37263 1.17585 1.77758 1.20642 0.83341 0.89561 1.52201 0.87179 1.24528 0.98351 0.95265 0.95594 1.69603 1.25262 1.08851 1.47586 0.86211 0.82893 0.78864 0.78891 1.19847 1.20716 1.18468 0.90754 0.89241 0.89656 0.79800 0.82400 0.91230 0.91282 0.89848 0.89846 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.70 11.27 59.85 0.67 1.37 16 2 N -0.38 -4.51 4.01 -63.88 -0.26 -4.76 16 3 N -0.30 -4.08 12.58 30.62 0.39 -3.70 16 4 C 0.04 0.57 12.03 -17.37 -0.21 0.36 16 5 C -0.24 -3.43 10.14 -40.01 -0.41 -3.84 16 6 C 0.07 0.98 6.91 -82.26 -0.57 0.41 16 7 C 0.13 1.50 5.90 36.01 0.21 1.71 16 8 O -0.35 -5.72 9.17 -55.15 -0.51 -6.22 16 9 C 0.08 1.32 6.53 36.01 0.24 1.55 16 10 C 0.41 9.58 7.98 36.01 0.29 9.86 16 11 O -0.52 -14.12 15.74 -25.78 -0.41 -14.53 16 12 O -0.25 -6.51 8.58 -20.69 -0.18 -6.69 16 13 C -0.38 -11.31 10.10 30.92 0.31 -11.00 16 14 H 0.11 3.62 7.09 -52.49 -0.37 3.24 16 15 C 0.07 1.88 5.49 -17.53 -0.10 1.79 16 16 N -0.87 -25.76 13.96 55.48 0.77 -24.98 16 17 Si 0.91 20.92 28.62 -169.99 -4.86 16.06 16 18 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.26 -5.81 7.11 56.52 0.40 -5.41 16 21 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 22 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 0.41 7.79 -51.93 -0.40 0.00 16 24 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 25 H 0.16 2.46 7.85 -52.49 -0.41 2.05 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 278.27 15.07 4.19 4.19 Total: -1.00 -36.08 278.27 -3.70 -39.77 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.28 Total: -1.37 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 0.44 Total: 2.22 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.90 Total: -33.44 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -1.09 Total: -27.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.86 Total: 16.06 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -36.08 -3.70 -39.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792502369.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.411 kcal (2) G-P(sol) polarization free energy of solvation -36.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds