Wall clock time and date at job start Sun Mar 29 2020 22:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40078 * 126.03632 * 2 1 4 4 C 1.30835 * 108.20414 * 180.02562 * 3 2 1 5 5 C 1.39867 * 108.20391 * 359.78057 * 4 3 2 6 6 C 1.34942 * 126.03533 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.12730 * 359.94220 * 6 2 1 8 8 O 1.42903 * 109.46878 * 179.97438 * 7 6 2 9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47140 * 180.02562 * 9 8 7 11 11 O 1.21208 * 119.99924 * 359.97438 * 10 9 8 12 12 O 1.34310 * 120.00259 * 180.02562 * 10 9 8 13 13 C 1.34919 * 117.00158 * 179.97438 * 12 10 9 14 14 H 1.07998 * 120.00122 * 359.97438 * 13 12 10 15 15 C 1.38757 * 120.00019 * 180.02562 * 13 12 10 16 16 N 1.31442 * 119.99801 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99976 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.46781 * 90.00445 * 17 15 13 19 19 H 1.48499 * 109.47242 * 209.99891 * 17 15 13 20 20 H 1.48494 * 109.47417 * 330.00496 * 17 15 13 21 21 H 1.09004 * 109.46977 * 269.97506 * 1 2 3 22 22 H 1.09004 * 109.47012 * 29.96800 * 1 2 3 23 23 H 1.08994 * 109.47199 * 149.97712 * 1 2 3 24 24 H 1.08001 * 125.89995 * 180.02562 * 4 3 2 25 25 H 1.08002 * 126.04530 * 180.23700 * 5 4 3 26 26 H 1.09002 * 109.47060 * 299.99858 * 7 6 2 27 27 H 1.09001 * 109.47380 * 59.99945 * 7 6 2 28 28 H 1.09007 * 109.47484 * 299.99646 * 9 8 7 29 29 H 1.09004 * 109.47459 * 59.99983 * 9 8 7 30 30 H 0.96998 * 120.00226 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0042 6 6 2.2589 -1.0912 -0.0005 7 6 1.7973 -2.5258 0.0001 8 8 2.9339 -3.3919 -0.0013 9 6 2.6049 -4.7825 -0.0003 10 6 3.8719 -5.5984 -0.0013 11 8 4.9498 -5.0440 -0.0032 12 8 3.8068 -6.9399 -0.0011 13 6 4.9778 -7.6100 -0.0026 14 1 5.9111 -7.0665 -0.0042 15 6 4.9832 -8.9976 -0.0030 16 7 6.1240 -9.6504 -0.0049 17 14 3.3691 -9.9378 -0.0009 18 1 2.9393 -10.1865 -1.4004 19 1 3.5526 -11.2349 0.6984 20 1 2.3321 -9.1395 0.7008 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8903 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 4.4054 1.3710 -0.0003 25 1 4.4211 -1.2964 0.0086 26 1 1.1976 -2.7141 0.8906 27 1 1.1961 -2.7144 -0.8894 28 1 2.0226 -5.0175 0.8907 29 1 2.0199 -5.0182 -0.8893 30 1 6.1278 -10.6204 -0.0049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792502369.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:07 Heat of formation + Delta-G solvation = -59.827158 kcal Electronic energy + Delta-G solvation = -16337.231051 eV Core-core repulsion = 13327.749304 eV Total energy + Delta-G solvation = -3009.481747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.20668 -41.18427 -38.98365 -37.21937 -34.50552 -34.28326 -32.35339 -29.85814 -27.66936 -27.36805 -26.47924 -22.28085 -21.85847 -20.89590 -20.16580 -18.81352 -17.91532 -17.65906 -17.18224 -16.78905 -16.70120 -15.88379 -15.86211 -15.29776 -14.64527 -14.53480 -14.32489 -13.86550 -13.72376 -13.47418 -13.19960 -13.05477 -12.63218 -12.37769 -12.23359 -11.84268 -11.74276 -11.07119 -10.99768 -10.82381 -10.18452 -9.49441 -8.53425 -6.42322 0.79719 1.29601 1.31456 1.40526 1.55535 1.61026 1.82794 1.98643 2.30874 2.92039 3.05780 3.61755 3.74168 4.08630 4.18302 4.24937 4.34505 4.36742 4.39333 4.47616 4.68682 4.72177 4.79983 5.17622 5.47275 5.68539 5.82746 5.95380 6.10490 6.55523 6.66762 6.82144 7.56211 8.59721 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.055262 B = 0.004358 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.556295 B = 6422.816581 C = 6903.623261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.371 5.371 3 N -0.323 5.323 4 C 0.041 3.959 5 C -0.278 4.278 6 C 0.074 3.926 7 C 0.128 3.872 8 O -0.389 6.389 9 C 0.097 3.903 10 C 0.403 3.597 11 O -0.568 6.568 12 O -0.251 6.251 13 C -0.412 4.412 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.920 5.920 17 Si 0.990 3.010 18 H -0.258 1.258 19 H -0.268 1.268 20 H -0.242 1.242 21 H 0.090 0.910 22 H 0.096 0.904 23 H 0.115 0.885 24 H 0.206 0.794 25 H 0.133 0.867 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.561 13.846 -0.042 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.156 5.156 3 N -0.145 5.145 4 C -0.143 4.143 5 C -0.307 4.307 6 C -0.054 4.054 7 C 0.051 3.949 8 O -0.308 6.308 9 C 0.020 3.980 10 C 0.250 3.750 11 O -0.463 6.463 12 O -0.161 6.161 13 C -0.488 4.488 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.559 5.559 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.193 1.193 20 H -0.165 1.165 21 H 0.109 0.891 22 H 0.115 0.885 23 H 0.133 0.867 24 H 0.222 0.778 25 H 0.151 0.849 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.924 14.878 -0.039 24.072 hybrid contribution 1.117 -1.049 -0.001 1.532 sum -17.806 13.829 -0.040 22.546 Atomic orbital electron populations 1.22313 0.71660 1.06333 1.05024 1.48714 1.07856 1.01956 1.57024 1.77277 1.02399 1.08502 1.26317 1.24257 0.95842 0.95068 0.99171 1.21446 0.97463 0.95239 1.16586 1.20850 0.91765 0.90752 1.02012 1.20902 0.87315 0.82246 1.04445 1.87936 1.32001 1.14864 1.96022 1.21664 0.89739 0.79597 1.06980 1.24166 0.92379 0.82091 0.76364 1.90624 1.33651 1.72619 1.49401 1.83464 1.34906 1.19004 1.78682 1.20284 0.82977 0.90455 1.55090 0.92987 1.25673 1.03331 0.95701 0.93890 1.69716 1.28361 1.09876 1.47974 0.84987 0.76935 0.77258 0.79935 1.18258 1.19322 1.16470 0.89113 0.88506 0.86695 0.77754 0.84863 0.87840 0.87739 0.85622 0.85487 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.27 127.77 1.44 2.33 16 2 N -0.37 -8.05 4.01 -356.02 -1.43 -9.48 16 3 N -0.32 -8.53 12.58 -57.03 -0.72 -9.25 16 4 C 0.04 1.07 12.03 85.24 1.02 2.09 16 5 C -0.28 -8.19 10.14 21.99 0.22 -7.97 16 6 C 0.07 1.83 6.91 41.41 0.29 2.12 16 7 C 0.13 2.44 5.90 71.24 0.42 2.86 16 8 O -0.39 -11.84 9.17 -129.94 -1.19 -13.03 16 9 C 0.10 2.75 6.53 71.24 0.47 3.22 16 10 C 0.40 18.84 7.98 71.24 0.57 19.41 16 11 O -0.57 -32.50 15.74 27.22 0.43 -32.07 16 12 O -0.25 -12.94 8.58 14.90 0.13 -12.82 16 13 C -0.41 -25.37 10.10 67.94 0.69 -24.68 16 14 H 0.05 3.71 7.09 -2.91 -0.02 3.68 16 15 C 0.01 0.79 5.49 84.88 0.47 1.25 16 16 N -0.92 -55.60 13.96 21.63 0.30 -55.30 16 17 Si 0.99 41.90 28.62 68.60 1.96 43.86 16 18 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 19 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.24 -9.43 7.11 99.48 0.71 -8.72 16 21 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 22 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.11 0.51 7.79 -2.39 -0.02 0.49 16 24 H 0.21 3.97 8.06 -2.91 -0.02 3.95 16 25 H 0.13 4.49 7.85 -2.91 -0.02 4.47 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 29 H 0.13 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.29 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -85.21 278.27 6.21 -78.99 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.15 Total: 8.47 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.58 Total: 0.62 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.84 Total: -74.03 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: -0.64 Total: -57.91 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.96 Total: 43.86 kcal Total: -85.21 6.21 -78.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792502369.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.167 kcal (2) G-P(sol) polarization free energy of solvation -85.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds