Wall clock time and date at job start Sun Mar 29 2020 22:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99719 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00175 * 3 2 1 5 5 H 1.48501 * 109.47260 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47336 * 120.00299 * 3 2 1 7 7 C 1.38810 * 120.00397 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00490 * 180.02562 * 7 2 1 9 9 N 1.36948 * 119.99599 * 359.97438 * 7 2 1 10 10 C 1.46489 * 119.99473 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47008 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47523 * 179.97438 * 11 10 9 13 13 C 1.34782 * 120.00277 * 179.97438 * 12 11 10 14 14 O 1.21274 * 119.99588 * 0.02562 * 13 12 11 15 15 C 1.50697 * 119.99898 * 180.02562 * 13 12 11 16 16 N 1.46503 * 109.46866 * 179.97438 * 15 13 12 17 17 N 1.28884 * 125.44630 * 90.00125 * 16 15 13 18 18 C 1.31040 * 107.91783 * 180.02562 * 17 16 15 19 19 N 1.33322 * 106.89561 * 359.97438 * 18 17 16 20 20 N 1.28776 * 125.45117 * 270.02229 * 16 15 13 21 21 H 0.97000 * 120.00122 * 359.97438 * 1 2 3 22 22 H 0.96995 * 119.99822 * 0.02562 * 9 7 2 23 23 H 1.09003 * 109.47592 * 60.00183 * 10 9 7 24 24 H 1.09003 * 109.47600 * 300.00014 * 10 9 7 25 25 H 1.09001 * 109.47411 * 59.99456 * 11 10 9 26 26 H 1.09003 * 109.46825 * 300.00334 * 11 10 9 27 27 H 0.97000 * 119.99825 * 359.97438 * 12 11 10 28 28 H 1.09003 * 109.47503 * 60.00340 * 15 13 12 29 29 H 1.08998 * 109.47118 * 300.00094 * 15 13 12 30 30 H 1.07994 * 126.55629 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6566 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 7 1.7964 -6.0883 -0.0018 13 6 1.1226 -7.2556 -0.0019 14 8 -0.0902 -7.2556 -0.0020 15 6 1.8762 -8.5606 -0.0020 16 7 0.9242 -9.6742 -0.0015 17 7 0.4381 -10.2425 -1.0512 18 6 -0.3741 -11.1919 -0.6561 19 7 -0.3640 -11.1806 0.6770 20 7 0.4389 -10.2415 1.0478 21 1 -0.4850 0.8400 0.0004 22 1 0.3556 -2.3880 -0.0005 23 1 2.6848 -3.7144 0.8895 24 1 2.6849 -3.7144 -0.8905 25 1 0.4376 -4.7618 -0.8913 26 1 0.4369 -4.7621 0.8886 27 1 2.7664 -6.0883 -0.0021 28 1 2.5028 -8.6185 0.8881 29 1 2.5029 -8.6183 -0.8919 30 1 -0.9431 -11.8564 -1.2893 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127433348.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:35 Heat of formation + Delta-G solvation = 82.293059 kcal Electronic energy + Delta-G solvation = -16094.292661 eV Core-core repulsion = 13155.559211 eV Total energy + Delta-G solvation = -2938.733450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.108 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.34992 -40.98570 -37.44722 -36.00611 -35.62530 -34.11722 -33.24099 -30.91616 -28.96008 -25.74658 -24.97689 -24.25473 -23.09263 -21.91948 -19.49114 -19.06702 -18.89923 -17.45566 -17.13201 -16.82665 -16.55225 -16.13259 -15.55238 -15.31200 -15.03042 -14.89947 -14.62417 -13.78983 -13.13422 -13.04770 -12.94297 -12.63709 -12.56353 -12.28012 -12.13073 -12.04565 -11.88599 -11.72832 -11.07511 -10.98171 -10.32056 -9.06969 -7.97314 -5.28835 0.09150 0.83565 1.25672 1.28870 1.48950 1.52303 1.58454 1.94676 2.56988 3.18331 3.37275 3.37431 3.48897 3.92830 3.97977 4.03784 4.14723 4.19263 4.56923 4.72062 4.78890 4.95734 5.06316 5.12709 5.24460 5.48606 6.23443 6.29828 6.98802 7.29715 7.30616 8.02204 8.23450 9.26212 Molecular weight = 240.11amu Principal moments of inertia in cm(-1) A = 0.087823 B = 0.003409 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.745474 B = 8210.504640 C = 8357.029434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.086 0.914 9 N -0.750 5.750 10 C 0.148 3.852 11 C 0.128 3.872 12 N -0.692 5.692 13 C 0.500 3.500 14 O -0.583 6.583 15 C 0.110 3.890 16 N -0.125 5.125 17 N -0.317 5.317 18 C 0.148 3.852 19 N -0.314 5.314 20 N -0.073 5.073 21 H 0.252 0.748 22 H 0.373 0.627 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.427 0.573 28 H 0.191 0.809 29 H 0.191 0.809 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.717 -20.682 -1.959 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.807 3.193 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.104 0.896 9 N -0.393 5.393 10 C 0.022 3.978 11 C 0.003 3.997 12 N -0.346 5.346 13 C 0.285 3.715 14 O -0.462 6.462 15 C -0.012 4.012 16 N -0.038 5.038 17 N -0.167 5.167 18 C -0.155 4.155 19 N -0.184 5.184 20 N -0.066 5.066 21 H 0.061 0.939 22 H 0.204 0.796 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.266 0.734 28 H 0.208 0.792 29 H 0.208 0.792 30 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 8.289 -20.287 -1.409 21.960 hybrid contribution -0.334 0.991 -0.463 1.143 sum 7.954 -19.297 -1.872 20.956 Atomic orbital electron populations 1.69830 1.06905 1.26364 1.59147 1.25675 0.96384 1.01533 1.03362 0.85137 0.77102 0.78643 0.78406 1.20015 1.22536 1.20059 1.19634 0.91814 0.84805 1.41746 0.89630 1.42443 1.05764 1.01234 1.89862 1.20881 0.93484 0.83729 0.99755 1.21188 0.94918 0.82391 1.01212 1.45443 1.11673 1.03873 1.73639 1.20910 0.87900 0.86460 0.76243 1.90824 1.16332 1.87965 1.51104 1.22491 0.87990 0.77230 1.13510 1.49831 1.29536 1.23751 1.00651 1.74697 1.14809 1.11116 1.16030 1.28182 0.98484 0.97790 0.91033 1.75843 1.15001 1.14256 1.13340 1.78929 1.07961 1.04776 1.14975 0.93942 0.79586 0.93939 0.93908 0.92828 0.92883 0.73358 0.79208 0.79211 0.70972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.98 44.79 29.55 68.60 2.03 46.82 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.25 -13.32 9.99 84.03 0.84 -12.48 16 8 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.75 -36.63 5.60 -343.46 -1.92 -38.55 16 10 C 0.15 5.10 6.37 86.38 0.55 5.65 16 11 C 0.13 3.90 5.79 86.38 0.50 4.40 16 12 N -0.69 -13.58 5.56 -463.06 -2.57 -16.15 16 13 C 0.50 11.15 7.90 87.66 0.69 11.85 16 14 O -0.58 -20.57 16.43 -3.01 -0.05 -20.62 16 15 C 0.11 1.29 7.08 85.63 0.61 1.90 16 16 N -0.12 -2.66 3.49 -190.99 -0.67 -3.33 16 17 N -0.32 -6.94 12.13 -61.09 -0.74 -7.68 16 18 C 0.15 2.88 13.26 180.68 2.40 5.28 16 19 N -0.31 -7.99 12.50 -61.11 -0.76 -8.75 16 20 N -0.07 -1.88 13.25 37.02 0.49 -1.39 16 21 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 22 H 0.37 19.96 7.67 -92.71 -0.71 19.25 16 23 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.43 4.38 8.47 -92.71 -0.79 3.59 16 28 H 0.19 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.19 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.27 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -82.44 277.98 1.83 -80.62 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.31 Total: 15.37 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.05 Total: 12.72 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -5.89 Total: -134.91 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.62 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -82.44 1.83 -80.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127433348.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.909 kcal (2) G-P(sol) polarization free energy of solvation -82.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds