Wall clock time and date at job start Sun Mar 29 2020 22:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47669 * 2 1 4 4 N 1.46500 * 109.47297 * 179.97438 * 3 2 1 5 5 C 1.38402 * 119.99901 * 180.02562 * 4 3 2 6 6 N 1.32744 * 119.44067 * 359.72761 * 5 4 3 7 7 C 1.31466 * 121.74353 * 179.75261 * 6 5 4 8 8 C 1.40792 * 120.38663 * 0.52324 * 7 6 5 9 9 C 1.41198 * 120.56424 * 179.76784 * 8 7 6 10 10 H 1.08006 * 119.99961 * 23.63283 * 9 8 7 11 11 C 1.39864 * 120.00340 * 203.62569 * 9 8 7 12 12 N 1.30907 * 119.99625 * 17.65037 * 11 9 8 13 13 Si 1.86795 * 120.00445 * 197.65606 * 11 9 8 14 14 H 1.48504 * 109.47295 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47470 * 120.00096 * 13 11 9 16 16 H 1.48506 * 109.47107 * 239.99832 * 13 11 9 17 17 C 1.41282 * 118.87387 * 359.74573 * 8 7 6 18 18 C 1.36672 * 118.39407 * 359.97438 * 17 8 7 19 19 Cl 1.73598 * 120.25831 * 179.97438 * 18 17 8 20 20 H 1.09007 * 109.47123 * 59.99381 * 1 2 3 21 21 H 1.08995 * 109.47760 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46785 * 300.00391 * 1 2 3 23 23 H 1.09004 * 109.47272 * 239.99817 * 2 1 3 24 24 H 1.08997 * 109.47152 * 120.00510 * 2 1 3 25 25 H 1.08999 * 109.46991 * 299.99971 * 3 2 1 26 26 H 1.08996 * 109.46552 * 60.00126 * 3 2 1 27 27 H 0.97005 * 119.99677 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.80928 * 180.25185 * 7 6 5 29 29 H 0.97004 * 119.99808 * 179.97438 * 12 11 9 30 30 H 1.07996 * 120.80238 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1972 2.6409 0.0013 6 7 3.5223 3.7840 -0.0042 7 6 4.1334 4.9480 0.0010 8 6 5.5398 5.0141 0.0015 9 6 6.2000 6.2622 0.0022 10 1 5.6948 7.1401 0.3772 11 6 7.5081 6.3617 -0.4827 12 7 7.9987 5.4144 -1.2414 13 14 8.5551 7.8462 -0.0477 14 1 7.7735 8.7673 0.8160 15 1 9.7711 7.3988 0.6780 16 1 8.9531 8.5529 -1.2917 17 6 6.2793 3.8102 0.0019 18 6 5.5950 2.6271 0.0023 19 17 6.4551 1.1192 0.0021 20 1 -0.3634 0.5140 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.6768 1.9563 -0.8900 26 1 1.6768 1.9562 0.8900 27 1 3.9900 0.6022 0.0006 28 1 3.5533 5.8589 0.0004 29 1 8.9058 5.4836 -1.5781 30 1 7.3591 3.8245 0.0027 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157363103.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:31 Heat of formation + Delta-G solvation = -8.748166 kcal Electronic energy + Delta-G solvation = -14531.822361 eV Core-core repulsion = 11965.264730 eV Total energy + Delta-G solvation = -2566.557631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 240.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.54812 -37.46449 -37.24475 -35.71161 -33.67286 -32.37704 -30.83969 -27.55863 -25.93161 -23.82956 -22.81188 -22.13987 -19.31158 -18.24660 -17.58244 -16.76194 -16.34899 -15.99133 -15.45693 -14.97205 -14.84744 -14.03245 -13.76135 -13.60700 -13.51370 -13.16020 -12.92842 -12.68704 -12.63784 -12.45182 -12.03941 -11.87771 -11.76909 -11.58561 -11.23162 -10.52013 -10.13451 -10.00392 -8.72976 -8.45716 -6.19432 0.64297 0.98154 1.40401 1.43504 1.53302 1.58461 2.23638 2.65209 2.73607 3.63647 3.97429 4.16246 4.21372 4.43565 4.53267 4.75219 4.80307 4.83647 4.96188 5.09185 5.17498 5.23496 5.29841 5.32090 5.44397 5.79047 5.79729 6.33156 6.59126 6.75675 6.83044 6.89320 7.72125 8.33823 Molecular weight = 240.07amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.006183 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.467408 B = 4527.128438 C = 5169.719192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.146 3.854 4 N -0.736 5.736 5 C 0.289 3.711 6 N -0.512 5.512 7 C 0.007 3.993 8 C 0.010 3.990 9 C -0.481 4.481 10 H 0.087 0.913 11 C 0.034 3.966 12 N -0.830 5.830 13 Si 0.983 3.017 14 H -0.255 1.255 15 H -0.268 1.268 16 H -0.268 1.268 17 C -0.104 4.104 18 C -0.115 4.115 19 Cl -0.085 7.085 20 H 0.055 0.945 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.404 0.596 28 H 0.148 0.852 29 H 0.289 0.711 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -6.713 1.931 8.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.021 3.979 4 N -0.377 5.377 5 C 0.053 3.947 6 N -0.228 5.228 7 C -0.151 4.151 8 C 0.004 3.996 9 C -0.512 4.512 10 H 0.105 0.895 11 C -0.180 4.180 12 N -0.457 5.457 13 Si 0.804 3.196 14 H -0.178 1.178 15 H -0.192 1.192 16 H -0.193 1.193 17 C -0.132 4.132 18 C -0.148 4.148 19 Cl -0.057 7.057 20 H 0.074 0.926 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.240 0.760 28 H 0.166 0.834 29 H 0.099 0.901 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.136 -6.871 1.783 9.383 hybrid contribution 1.858 0.284 -0.060 1.880 sum -4.279 -6.587 1.723 8.042 Atomic orbital electron populations 1.21649 0.93504 1.02749 1.02205 1.21688 0.97627 0.94443 1.02797 1.21084 0.79370 0.97497 0.99924 1.43938 1.05709 1.03359 1.84645 1.17767 0.85941 0.87614 1.03334 1.66831 1.39725 0.97539 1.18731 1.22603 0.91857 0.93671 1.07012 1.18604 0.92556 0.94025 0.94377 1.19626 0.98946 0.94939 1.37687 0.89506 1.26731 0.98898 1.00642 0.91723 1.69865 1.17169 1.34842 1.23840 0.85126 0.77811 0.77557 0.79061 1.17842 1.19245 1.19332 1.21257 1.00439 0.90059 1.01416 1.21007 0.91064 0.87342 1.15368 1.98231 1.77215 1.32651 1.97605 0.92575 0.90793 0.92457 0.91226 0.91048 0.94313 0.94047 0.75964 0.83443 0.90063 0.85652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.91 71.98 0.71 -1.87 16 2 C -0.13 -2.83 6.05 30.59 0.19 -2.65 16 3 C 0.15 4.56 5.66 86.38 0.49 5.05 16 4 N -0.74 -27.20 5.64 -344.76 -1.94 -29.15 16 5 C 0.29 13.17 7.48 133.32 1.00 14.16 16 6 N -0.51 -24.55 9.52 -191.09 -1.82 -26.37 16 7 C 0.01 0.34 10.97 85.37 0.94 1.27 16 8 C 0.01 0.53 5.59 -21.18 -0.12 0.41 16 9 C -0.48 -24.82 9.06 23.39 0.21 -24.60 16 10 H 0.09 4.24 7.90 -2.91 -0.02 4.21 16 11 C 0.03 1.68 5.17 85.22 0.44 2.12 16 12 N -0.83 -42.38 10.92 21.82 0.24 -42.14 16 13 Si 0.98 37.01 29.59 68.60 2.03 39.04 16 14 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 15 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 16 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 17 C -0.10 -5.42 8.53 22.65 0.19 -5.23 16 18 C -0.12 -5.40 6.32 22.28 0.14 -5.26 16 19 Cl -0.09 -3.30 27.56 -2.72 -0.07 -3.38 16 20 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 21 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.40 13.45 7.08 -92.70 -0.66 12.80 16 28 H 0.15 6.65 8.06 -2.91 -0.02 6.63 16 29 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 30 H 0.13 6.78 6.19 -2.91 -0.02 6.76 16 Total: -1.00 -56.86 273.82 3.12 -53.75 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.49 Total: 24.86 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.19 Total: -16.60 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -3.52 Total: -97.66 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 2.03 Total: 39.04 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -0.07 Total: -3.38 kcal Total: -56.86 3.12 -53.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157363103.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.001 kcal (2) G-P(sol) polarization free energy of solvation -56.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds