Wall clock time and date at job start Sun Mar 29 2020 22:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48498 * 109.47196 * 240.00569 * 3 2 1 5 5 H 1.48503 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47259 * 120.00288 * 3 2 1 7 7 C 1.40105 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00403 * 179.97438 * 7 2 1 9 9 C 1.40721 * 119.99891 * 359.97438 * 7 2 1 10 10 N 1.33723 * 119.95069 * 0.29169 * 9 7 2 11 11 C 1.31272 * 121.63906 * 180.33172 * 10 9 7 12 12 C 1.39092 * 121.35855 * 359.66351 * 11 10 9 13 13 C 1.38305 * 119.74798 * 0.02562 * 12 11 10 14 14 C 1.39789 * 118.47305 * 359.97438 * 13 12 11 15 15 C 1.47636 * 120.66015 * 180.02562 * 14 13 12 16 16 C 1.39857 * 120.07336 * 130.22984 * 15 14 13 17 17 C 1.37639 * 119.92661 * 180.25565 * 16 15 14 18 18 C 1.39227 * 120.07112 * 359.49471 * 17 16 15 19 19 N 1.39249 * 119.92666 * 180.25636 * 18 17 16 20 20 C 1.39229 * 120.15139 * 0.27712 * 18 17 16 21 21 C 1.37642 * 120.07358 * 359.97438 * 20 18 17 22 22 H 0.97003 * 120.00036 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.31980 * 179.67385 * 11 10 9 24 24 H 1.08005 * 120.12512 * 180.02562 * 12 11 10 25 25 H 1.08000 * 120.76574 * 179.97438 * 13 12 11 26 26 H 1.08004 * 120.04040 * 0.02562 * 16 15 14 27 27 H 1.08002 * 119.96833 * 179.77617 * 17 16 15 28 28 H 0.96998 * 119.99489 * 359.97438 * 19 18 17 29 29 H 0.96996 * 120.00359 * 180.02562 * 19 18 17 30 30 H 1.07997 * 119.96281 * 180.02562 * 20 18 17 31 31 H 1.07997 * 120.03700 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0948 1.6965 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0949 1.6964 1.2124 7 6 2.0077 -1.2133 -0.0005 8 1 3.0878 -1.2133 -0.0010 9 6 1.3042 -2.4320 -0.0005 10 7 -0.0330 -2.4309 -0.0059 11 6 -0.7226 -3.5479 0.0004 12 6 -0.0922 -4.7877 0.0060 13 6 1.2892 -4.8552 0.0055 14 6 2.0148 -3.6603 -0.0012 15 6 3.4911 -3.6760 -0.0026 16 6 4.1993 -2.9065 -0.9312 17 6 5.5755 -2.9274 -0.9332 18 6 6.2627 -3.7054 -0.0054 19 7 7.6551 -3.7202 -0.0066 20 6 5.5609 -4.4690 0.9236 21 6 4.1846 -4.4566 0.9277 22 1 -0.4850 0.8401 0.0004 23 1 -1.8017 -3.5033 0.0010 24 1 -0.6792 -5.6943 0.0107 25 1 1.7958 -5.8090 0.0102 26 1 3.6668 -2.2993 -1.6484 27 1 6.1230 -2.3362 -1.6524 28 1 8.1451 -3.1891 -0.6538 29 1 8.1350 -4.2620 0.6390 30 1 6.0971 -5.0710 1.6422 31 1 3.6408 -5.0494 1.6482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241543877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:10 Heat of formation + Delta-G solvation = 52.918657 kcal Electronic energy + Delta-G solvation = -16107.449158 eV Core-core repulsion = 13545.998450 eV Total energy + Delta-G solvation = -2561.450708 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.93656 -37.69085 -34.21818 -33.65139 -30.81602 -30.49225 -29.93056 -27.10636 -25.52619 -22.43341 -22.01574 -21.09342 -19.98310 -17.49132 -16.56498 -16.37881 -15.67972 -15.16736 -14.35074 -14.15773 -13.40351 -13.35166 -12.77197 -12.72458 -12.56907 -12.15918 -11.99766 -11.38879 -11.18789 -11.06747 -10.82780 -10.38458 -10.22506 -10.18682 -9.60399 -9.37793 -8.25122 -8.19594 -7.70164 -7.55069 -6.68446 -6.39844 -4.47778 2.09564 2.14059 2.81240 3.07475 3.10351 3.11663 3.24730 3.93670 4.23742 4.60747 4.75756 5.51964 5.55320 5.90607 5.91371 6.14460 6.16276 6.20251 6.26685 6.50381 6.56721 6.76009 6.86759 6.93524 7.02126 7.16850 7.39386 7.45247 7.48154 7.69354 7.83399 7.98509 8.07179 8.09479 8.26873 8.65146 8.95253 10.10953 10.29053 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.010106 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.973438 B = 2769.923174 C = 4146.313775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.422 4.422 8 H 0.094 0.906 9 C 0.266 3.734 10 N -0.483 5.483 11 C 0.127 3.873 12 C -0.321 4.321 13 C -0.040 4.040 14 C -0.223 4.223 15 C -0.030 4.030 16 C -0.061 4.061 17 C -0.199 4.199 18 C 0.186 3.814 19 N -0.887 5.887 20 C -0.199 4.199 21 C -0.083 4.083 22 H 0.274 0.726 23 H 0.117 0.883 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.126 0.874 27 H 0.110 0.890 28 H 0.392 0.608 29 H 0.391 0.609 30 H 0.108 0.892 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.018 -3.375 -0.227 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.158 4.158 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.452 4.452 8 H 0.112 0.888 9 C 0.142 3.858 10 N -0.195 5.195 11 C -0.040 4.040 12 C -0.345 4.345 13 C -0.064 4.064 14 C -0.228 4.228 15 C -0.032 4.032 16 C -0.079 4.079 17 C -0.221 4.221 18 C 0.084 3.916 19 N -0.427 5.427 20 C -0.222 4.222 21 C -0.102 4.102 22 H 0.085 0.915 23 H 0.134 0.866 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.144 0.856 27 H 0.128 0.872 28 H 0.219 0.781 29 H 0.218 0.782 30 H 0.126 0.874 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.350 -2.372 -0.234 8.684 hybrid contribution 1.115 -0.181 0.091 1.134 sum 9.466 -2.553 -0.144 9.805 Atomic orbital electron populations 1.70126 1.07253 1.27972 1.27825 1.26140 0.94857 1.01174 0.93607 0.86441 0.80202 0.80497 0.80135 1.18734 1.20195 1.18810 1.19742 0.94962 0.89212 1.41278 0.88844 1.18551 0.87933 0.91089 0.88187 1.68761 1.07162 1.26536 1.17038 1.22578 0.98720 0.88918 0.93823 1.21197 0.94651 0.97749 1.20855 1.20892 0.93691 0.95787 0.96042 1.19359 0.91032 0.94181 1.18198 1.18517 0.92556 0.96951 0.95216 1.21174 0.92476 0.96799 0.97498 1.20446 0.94618 1.04883 1.02156 1.17732 0.83491 0.95408 0.95004 1.42232 1.03510 1.55573 1.41371 1.20324 0.94334 1.05390 1.02154 1.20997 0.92852 0.98636 0.97684 0.91502 0.86559 0.88898 0.88686 0.85562 0.87182 0.78134 0.78220 0.87401 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.86 11.46 55.56 0.64 -18.22 16 2 C 0.07 1.73 5.50 -17.33 -0.10 1.64 16 3 Si 0.90 18.67 29.56 -169.99 -5.02 13.65 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.42 -11.14 7.95 -37.94 -0.30 -11.45 16 8 H 0.09 2.35 5.24 -52.49 -0.27 2.08 16 9 C 0.27 7.23 6.56 -84.70 -0.56 6.68 16 10 N -0.48 -13.38 7.85 -10.90 -0.09 -13.46 16 11 C 0.13 3.12 11.17 -17.47 -0.20 2.92 16 12 C -0.32 -7.28 10.10 -39.24 -0.40 -7.68 16 13 C -0.04 -0.91 9.66 -38.98 -0.38 -1.29 16 14 C -0.22 -5.45 5.53 -104.08 -0.58 -6.03 16 15 C -0.03 -0.65 5.03 -104.85 -0.53 -1.18 16 16 C -0.06 -1.24 7.55 -39.19 -0.30 -1.53 16 17 C -0.20 -3.46 9.87 -39.43 -0.39 -3.85 16 18 C 0.19 2.98 6.76 -83.75 -0.57 2.41 16 19 N -0.89 -10.41 9.07 32.45 0.29 -10.11 16 20 C -0.20 -3.33 9.87 -39.43 -0.39 -3.72 16 21 C -0.08 -1.59 9.54 -39.20 -0.37 -1.96 16 22 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 23 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 24 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 25 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 26 H 0.13 2.67 7.24 -52.48 -0.38 2.29 16 27 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.39 3.85 8.83 -40.82 -0.36 3.49 16 29 H 0.39 3.76 8.83 -40.82 -0.36 3.39 16 30 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.11 2.05 8.05 -52.49 -0.42 1.62 16 LS Contribution 271.12 15.07 4.09 4.09 Total: -1.00 -29.56 271.12 -8.18 -37.74 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -3.05 Total: 11.36 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -5.04 Total: -25.03 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.85 Total: -41.80 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.56 -8.18 -37.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241543877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.657 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds