Wall clock time and date at job start Sun Mar 29 2020 22:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30717 * 1 3 3 Si 1.86799 * 119.99988 * 2 1 4 4 H 1.48498 * 109.47196 * 240.00569 * 3 2 1 5 5 H 1.48503 * 109.47174 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47259 * 120.00288 * 3 2 1 7 7 C 1.40105 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00403 * 179.97438 * 7 2 1 9 9 C 1.40721 * 119.99891 * 359.97438 * 7 2 1 10 10 N 1.33723 * 119.95069 * 0.29169 * 9 7 2 11 11 C 1.31272 * 121.63906 * 180.33172 * 10 9 7 12 12 C 1.39092 * 121.35855 * 359.66351 * 11 10 9 13 13 C 1.38305 * 119.74798 * 0.02562 * 12 11 10 14 14 C 1.39789 * 118.47305 * 359.97438 * 13 12 11 15 15 C 1.47636 * 120.66015 * 180.02562 * 14 13 12 16 16 C 1.39857 * 120.07336 * 130.22984 * 15 14 13 17 17 C 1.37639 * 119.92661 * 180.25565 * 16 15 14 18 18 C 1.39227 * 120.07112 * 359.49471 * 17 16 15 19 19 N 1.39249 * 119.92666 * 180.25636 * 18 17 16 20 20 C 1.39229 * 120.15139 * 0.27712 * 18 17 16 21 21 C 1.37642 * 120.07358 * 359.97438 * 20 18 17 22 22 H 0.97003 * 120.00036 * 359.97438 * 1 2 3 23 23 H 1.08002 * 119.31980 * 179.67385 * 11 10 9 24 24 H 1.08005 * 120.12512 * 180.02562 * 12 11 10 25 25 H 1.08000 * 120.76574 * 179.97438 * 13 12 11 26 26 H 1.08004 * 120.04040 * 0.02562 * 16 15 14 27 27 H 1.08002 * 119.96833 * 179.77617 * 17 16 15 28 28 H 0.96998 * 119.99489 * 359.97438 * 19 18 17 29 29 H 0.96996 * 120.00359 * 180.02562 * 19 18 17 30 30 H 1.07997 * 119.96281 * 180.02562 * 20 18 17 31 31 H 1.07997 * 120.03700 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 3.0948 1.6965 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0949 1.6964 1.2124 7 6 2.0077 -1.2133 -0.0005 8 1 3.0878 -1.2133 -0.0010 9 6 1.3042 -2.4320 -0.0005 10 7 -0.0330 -2.4309 -0.0059 11 6 -0.7226 -3.5479 0.0004 12 6 -0.0922 -4.7877 0.0060 13 6 1.2892 -4.8552 0.0055 14 6 2.0148 -3.6603 -0.0012 15 6 3.4911 -3.6760 -0.0026 16 6 4.1993 -2.9065 -0.9312 17 6 5.5755 -2.9274 -0.9332 18 6 6.2627 -3.7054 -0.0054 19 7 7.6551 -3.7202 -0.0066 20 6 5.5609 -4.4690 0.9236 21 6 4.1846 -4.4566 0.9277 22 1 -0.4850 0.8401 0.0004 23 1 -1.8017 -3.5033 0.0010 24 1 -0.6792 -5.6943 0.0107 25 1 1.7958 -5.8090 0.0102 26 1 3.6668 -2.2993 -1.6484 27 1 6.1230 -2.3362 -1.6524 28 1 8.1451 -3.1891 -0.6538 29 1 8.1350 -4.2620 0.6390 30 1 6.0971 -5.0710 1.6422 31 1 3.6408 -5.0494 1.6482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241543877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:09 Heat of formation + Delta-G solvation = 34.978014 kcal Electronic energy + Delta-G solvation = -16108.227123 eV Core-core repulsion = 13545.998450 eV Total energy + Delta-G solvation = -2562.228672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 240.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51710 -39.33546 -35.59986 -35.47572 -32.50012 -32.13205 -31.51785 -28.67428 -27.33030 -24.03442 -23.57096 -22.83093 -21.56881 -19.36130 -17.88769 -17.65675 -17.29940 -16.75828 -16.06395 -15.98926 -14.90164 -14.78667 -14.40674 -14.18883 -13.95618 -13.85366 -13.77030 -13.08245 -12.85397 -12.76084 -12.59920 -12.00835 -11.74375 -11.70455 -11.21885 -11.15215 -10.02412 -9.67039 -9.50663 -9.44357 -8.30580 -8.02308 -6.39782 0.53245 0.71886 1.04036 1.37425 1.38496 1.50396 1.55338 2.22173 2.86906 3.15376 3.19150 3.97808 4.19252 4.23549 4.27072 4.39553 4.58312 4.71275 4.80481 4.87604 5.04239 5.12754 5.23245 5.34416 5.43791 5.52681 5.69890 5.77215 5.90873 6.15017 6.16416 6.26518 6.36665 6.75492 6.78127 7.04560 7.16696 8.22351 8.45688 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.010106 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.973438 B = 2769.923174 C = 4146.313775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.023 3.977 3 Si 0.977 3.023 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.451 4.451 8 H 0.097 0.903 9 C 0.231 3.769 10 N -0.522 5.522 11 C 0.101 3.899 12 C -0.312 4.312 13 C -0.053 4.053 14 C -0.224 4.224 15 C -0.071 4.071 16 C -0.073 4.073 17 C -0.204 4.204 18 C 0.202 3.798 19 N -0.866 5.866 20 C -0.200 4.200 21 C -0.085 4.085 22 H 0.278 0.722 23 H 0.135 0.865 24 H 0.125 0.875 25 H 0.123 0.877 26 H 0.104 0.896 27 H 0.134 0.866 28 H 0.405 0.595 29 H 0.406 0.594 30 H 0.141 0.859 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.819 -4.041 0.107 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.199 4.199 3 Si 0.797 3.203 4 H -0.179 1.179 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.481 4.481 8 H 0.115 0.885 9 C 0.106 3.894 10 N -0.234 5.234 11 C -0.065 4.065 12 C -0.335 4.335 13 C -0.077 4.077 14 C -0.229 4.229 15 C -0.073 4.073 16 C -0.092 4.092 17 C -0.227 4.227 18 C 0.097 3.903 19 N -0.407 5.407 20 C -0.222 4.222 21 C -0.104 4.104 22 H 0.089 0.911 23 H 0.153 0.847 24 H 0.143 0.857 25 H 0.141 0.859 26 H 0.122 0.878 27 H 0.151 0.849 28 H 0.234 0.766 29 H 0.236 0.764 30 H 0.159 0.841 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 11.184 -3.073 0.097 11.599 hybrid contribution 0.378 -0.158 -0.012 0.410 sum 11.561 -3.232 0.085 12.005 Atomic orbital electron populations 1.70232 1.08873 1.29064 1.29408 1.27028 0.95641 1.04522 0.92683 0.85345 0.78851 0.75892 0.80251 1.17865 1.19193 1.18514 1.19990 0.95258 0.89993 1.42889 0.88544 1.19033 0.88329 0.92721 0.89275 1.68683 1.07952 1.28306 1.18504 1.22998 0.99754 0.89237 0.94472 1.21545 0.95073 0.98251 1.18624 1.21268 0.93978 0.96567 0.95898 1.19737 0.93012 0.93816 1.16324 1.18516 0.91315 0.99809 0.97689 1.21054 0.93869 0.96871 0.97400 1.20626 0.93513 1.05448 1.03115 1.17807 0.85301 0.93662 0.93539 1.42187 1.01780 1.55112 1.41601 1.20618 0.93442 1.05457 1.02706 1.21083 0.94133 0.98083 0.97086 0.91114 0.84735 0.85668 0.85944 0.87798 0.84853 0.76587 0.76430 0.84133 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.68 11.46 21.85 0.25 -41.43 16 2 C 0.02 1.21 5.50 85.31 0.47 1.68 16 3 Si 0.98 39.07 29.56 68.60 2.03 41.10 16 4 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.45 -24.82 7.95 23.33 0.19 -24.64 16 8 H 0.10 5.05 5.24 -2.91 -0.02 5.03 16 9 C 0.23 13.09 6.56 40.37 0.26 13.36 16 10 N -0.52 -30.14 7.85 -188.39 -1.48 -31.62 16 11 C 0.10 5.06 11.17 84.98 0.95 6.01 16 12 C -0.31 -14.05 10.10 22.49 0.23 -13.83 16 13 C -0.05 -2.41 9.66 22.66 0.22 -2.20 16 14 C -0.22 -11.25 5.53 -19.51 -0.11 -11.36 16 15 C -0.07 -3.09 5.03 -20.01 -0.10 -3.19 16 16 C -0.07 -3.00 7.55 22.52 0.17 -2.83 16 17 C -0.20 -6.71 9.87 22.37 0.22 -6.49 16 18 C 0.20 5.77 6.76 38.44 0.26 6.03 16 19 N -0.87 -16.29 9.07 -51.24 -0.46 -16.76 16 20 C -0.20 -6.02 9.87 22.37 0.22 -5.80 16 21 C -0.08 -3.14 9.54 22.52 0.21 -2.93 16 22 H 0.28 13.93 8.29 -92.71 -0.77 13.16 16 23 H 0.14 5.97 8.06 -2.91 -0.02 5.95 16 24 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 25 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 26 H 0.10 4.61 7.24 -2.91 -0.02 4.59 16 27 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.40 6.04 8.83 -92.71 -0.82 5.22 16 29 H 0.41 5.71 8.83 -92.71 -0.82 4.89 16 30 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.12 4.10 8.05 -2.91 -0.02 4.07 16 Total: -1.00 -66.60 271.12 3.06 -63.53 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: -0.46 Total: 31.33 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 3.19 Total: -46.17 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -1.69 Total: -89.80 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -66.60 3.06 -63.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241543877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.512 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds