Wall clock time and date at job start Sun Mar 29 2020 22:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47104 * 2 1 4 4 C 1.50702 * 109.46859 * 239.99753 * 2 1 3 5 5 O 1.21284 * 120.00244 * 240.00009 * 4 2 1 6 6 N 1.34781 * 119.99767 * 60.00044 * 4 2 1 7 7 C 1.37096 * 119.99625 * 179.97438 * 6 4 2 8 8 H 1.07997 * 120.00180 * 0.02562 * 7 6 4 9 9 C 1.38953 * 119.99640 * 179.97438 * 7 6 4 10 10 N 1.31410 * 120.00025 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99854 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47226 * 60.00492 * 11 9 7 13 13 H 1.48501 * 109.46959 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47090 * 300.00266 * 11 9 7 15 15 N 1.46497 * 109.47101 * 120.00175 * 2 1 3 16 16 C 1.33879 * 122.76265 * 239.99917 * 15 2 1 17 17 O 1.21233 * 125.39135 * 359.97435 * 16 15 2 18 18 C 1.51312 * 109.20866 * 180.24223 * 16 15 2 19 19 C 1.54228 * 103.55616 * 359.63118 * 18 16 15 20 20 C 1.33875 * 122.76728 * 59.99574 * 15 2 1 21 21 O 1.21230 * 125.39221 * 0.02562 * 20 15 2 22 22 H 1.08994 * 109.46948 * 299.99967 * 1 2 3 23 23 H 1.08998 * 109.46998 * 60.00104 * 1 2 3 24 24 H 1.09003 * 109.47094 * 180.02562 * 1 2 3 25 25 H 0.96998 * 119.99978 * 0.02562 * 6 4 2 26 26 H 0.96999 * 120.00099 * 179.97438 * 10 9 7 27 27 H 1.09004 * 110.60416 * 118.27645 * 18 16 15 28 28 H 1.08993 * 110.60499 * 241.24048 * 18 16 15 29 29 H 1.08994 * 110.80706 * 241.73088 * 19 18 16 30 30 H 1.08998 * 110.53952 * 118.82350 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1192 6 7 1.7066 -0.2500 -2.4546 7 6 2.1640 -0.8961 -3.5740 8 1 2.7849 -1.7741 -3.4749 9 6 1.8278 -0.4216 -4.8360 10 7 1.0720 0.6465 -4.9565 11 14 2.4504 -1.3023 -6.3612 12 1 1.9558 -2.7025 -6.3609 13 1 1.9554 -0.6023 -7.5737 14 1 3.9355 -1.3019 -6.3616 15 7 2.0184 -0.6906 1.1961 16 6 2.7906 -0.0940 2.1127 17 8 3.1710 1.0562 2.0690 18 6 3.1187 -1.0847 3.2083 19 6 2.3866 -2.3682 2.7662 20 6 1.7291 -1.9703 1.4628 21 8 1.0486 -2.6955 0.7695 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.1493 0.5389 -2.5436 26 1 0.8376 0.9779 -5.8375 27 1 4.1941 -1.2537 3.2632 28 1 2.7344 -0.7373 4.1673 29 1 1.6363 -2.6587 3.5014 30 1 3.0981 -3.1781 2.6053 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325968985.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:19 Heat of formation + Delta-G solvation = -126.737438 kcal Electronic energy + Delta-G solvation = -17523.021660 eV Core-core repulsion = 14510.638465 eV Total energy + Delta-G solvation = -3012.383195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.94384 -40.12548 -39.48751 -36.85831 -36.09815 -35.15372 -33.36528 -31.18076 -27.31637 -27.02560 -25.38010 -23.26354 -21.94959 -20.41866 -19.76062 -18.33953 -18.12105 -17.55665 -17.08749 -16.51237 -15.99306 -15.76140 -15.44479 -15.17816 -14.87217 -14.76256 -14.46353 -13.90690 -13.56956 -13.42700 -13.25594 -12.98647 -12.84504 -12.51485 -12.16132 -12.04919 -11.59626 -11.48142 -11.18514 -10.92982 -10.28921 -10.11957 -8.54241 -6.04460 0.61583 1.34294 1.36793 1.44932 1.52018 1.85845 1.89089 2.25606 2.96619 3.11627 3.30706 3.36160 3.70698 3.88572 3.94966 4.04962 4.23770 4.30308 4.62321 4.75298 4.77733 4.94186 4.95795 5.01935 5.32789 5.86680 5.94679 6.44171 6.45143 6.85007 7.01403 7.39444 7.93286 8.62749 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.039511 B = 0.006578 C = 0.006342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.494022 B = 4255.650550 C = 4414.010731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.117 3.883 3 H 0.121 0.879 4 C 0.430 3.570 5 O -0.619 6.619 6 N -0.559 5.559 7 C -0.340 4.340 8 H 0.078 0.922 9 C -0.009 4.009 10 N -0.915 5.915 11 Si 0.997 3.003 12 H -0.272 1.272 13 H -0.265 1.265 14 H -0.271 1.271 15 N -0.563 5.563 16 C 0.517 3.483 17 O -0.529 6.529 18 C -0.133 4.133 19 C -0.138 4.138 20 C 0.514 3.486 21 O -0.516 6.516 22 H 0.095 0.905 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.397 0.603 26 H 0.281 0.719 27 H 0.142 0.858 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -1.265 16.190 16.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.010 3.990 3 H 0.138 0.862 4 C 0.217 3.783 5 O -0.506 6.506 6 N -0.195 5.195 7 C -0.469 4.469 8 H 0.096 0.904 9 C -0.209 4.209 10 N -0.555 5.555 11 Si 0.819 3.181 12 H -0.197 1.197 13 H -0.190 1.190 14 H -0.196 1.196 15 N -0.305 5.305 16 C 0.310 3.690 17 O -0.404 6.404 18 C -0.171 4.171 19 C -0.177 4.177 20 C 0.306 3.694 21 O -0.389 6.389 22 H 0.114 0.886 23 H 0.100 0.900 24 H 0.075 0.925 25 H 0.232 0.768 26 H 0.091 0.909 27 H 0.160 0.840 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.226 -1.578 15.668 15.749 hybrid contribution -0.085 0.243 -1.469 1.491 sum 0.142 -1.336 14.199 14.262 Atomic orbital electron populations 1.22013 0.90393 1.03437 1.04640 1.21028 0.97625 0.97207 0.83135 0.86160 1.20622 0.85199 0.87113 0.85408 1.90475 1.43614 1.29700 1.86815 1.41781 1.45854 1.27683 1.04211 1.19636 1.31139 1.11450 0.84685 0.90409 1.26100 0.96335 0.96952 1.01530 1.69657 1.36213 1.23180 1.26479 0.84948 0.78594 0.78096 0.76430 1.19746 1.18959 1.19575 1.46770 1.47310 1.15003 1.21466 1.21907 0.74743 0.88303 0.84068 1.90728 1.52739 1.19005 1.77967 1.22584 1.05725 0.90800 0.98020 1.22582 1.02543 1.00024 0.92537 1.21857 0.78889 0.79822 0.88882 1.90726 1.38237 1.55108 1.54815 0.88618 0.90040 0.92498 0.76809 0.90942 0.84028 0.82164 0.82601 0.84913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.90 9.07 71.98 0.65 -4.25 16 2 C 0.12 4.58 3.12 44.25 0.14 4.71 16 3 H 0.12 4.51 7.41 -2.39 -0.02 4.49 16 4 C 0.43 22.14 6.74 87.66 0.59 22.73 16 5 O -0.62 -36.19 14.38 12.52 0.18 -36.01 16 6 N -0.56 -30.32 5.18 -306.98 -1.59 -31.91 16 7 C -0.34 -20.07 9.68 84.04 0.81 -19.26 16 8 H 0.08 4.90 7.16 -2.91 -0.02 4.87 16 9 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 10 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 11 Si 1.00 43.83 29.55 68.60 2.03 45.85 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 13 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 N -0.56 -19.07 2.28 -738.13 -1.68 -20.75 16 16 C 0.52 14.53 8.08 87.99 0.71 15.24 16 17 O -0.53 -18.24 17.23 -2.88 -0.05 -18.29 16 18 C -0.13 -1.82 7.03 30.46 0.21 -1.60 16 19 C -0.14 -2.21 7.03 30.46 0.21 -2.00 16 20 C 0.51 16.74 6.70 87.99 0.59 17.33 16 21 O -0.52 -22.00 15.12 12.68 0.19 -21.81 16 22 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.08 2.68 7.56 -2.39 -0.02 2.66 16 24 H 0.06 2.14 6.64 -2.39 -0.02 2.12 16 25 H 0.40 20.37 7.32 -92.71 -0.68 19.70 16 26 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -81.21 266.16 4.25 -76.95 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.50 Total: 22.97 kcal Atomic # 6 Polarization: 28.52 SS G_CDS: 4.39 Total: 32.91 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -2.99 Total: -102.58 kcal Atomic # 8 Polarization: -76.43 SS G_CDS: 0.32 Total: -76.10 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -81.21 4.25 -76.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325968985.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.783 kcal (2) G-P(sol) polarization free energy of solvation -81.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds