Wall clock time and date at job start Sun Mar 29 2020 22:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48500 * 109.47059 * 269.99741 * 3 2 1 5 5 H 1.48495 * 109.47251 * 30.00345 * 3 2 1 6 6 H 1.48504 * 109.46955 * 150.00163 * 3 2 1 7 7 C 1.37874 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99824 * 179.97438 * 7 2 1 10 10 O 1.42898 * 113.27890 * 313.06427 * 9 7 2 11 11 C 1.53493 * 114.20428 * 179.97438 * 9 7 2 12 12 N 1.47069 * 87.98602 * 220.14715 * 11 9 7 13 13 C 1.34769 * 136.05803 * 207.08654 * 12 11 9 14 14 O 1.21284 * 120.00341 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00181 * 179.97438 * 13 12 11 16 16 H 1.08998 * 112.98813 * 308.45457 * 15 13 12 17 17 C 1.53737 * 113.70226 * 79.99991 * 15 13 12 18 18 C 1.51515 * 86.60407 * 114.40597 * 17 15 13 19 19 O 1.21279 * 134.17314 * 179.97438 * 18 17 15 20 20 N 1.35841 * 91.65092 * 359.97438 * 18 17 15 21 21 C 1.47069 * 87.88233 * 27.34168 * 12 11 9 22 22 H 0.96996 * 120.00025 * 359.97438 * 1 2 3 23 23 H 0.96699 * 114.00037 * 46.94017 * 10 9 7 24 24 H 1.09004 * 113.46679 * 105.36905 * 11 9 7 25 25 H 1.09003 * 113.47070 * 334.93097 * 11 9 7 26 26 H 1.09002 * 113.68508 * 228.82599 * 17 15 13 27 27 H 1.08991 * 113.69407 * 359.97438 * 17 15 13 28 28 H 0.96990 * 132.38021 * 180.02562 * 20 18 17 29 29 H 1.09002 * 113.46487 * 87.43827 * 21 12 11 30 30 H 1.09001 * 113.46694 * 217.87586 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 4.0759 -0.2975 -0.9601 11 6 4.1409 -2.5940 -0.0010 12 7 5.1448 -2.0861 0.9461 13 6 6.4190 -2.3882 1.2643 14 8 6.9899 -3.2909 0.6898 15 6 7.1351 -1.6035 2.3333 16 1 7.0831 -0.5260 2.1774 17 6 6.7775 -2.0391 3.7637 18 6 8.2175 -2.4937 3.8887 19 8 8.8671 -3.0092 4.7736 20 7 8.4943 -2.0965 2.6195 21 6 4.1440 -1.1075 1.3976 22 1 -0.4850 0.8400 0.0004 23 1 3.6773 0.5835 -0.9572 24 1 4.5602 -2.8815 -0.9653 25 1 3.4930 -3.3612 0.4230 26 1 6.5214 -1.2096 4.4228 27 1 6.0556 -2.8545 3.8057 28 1 9.3044 -2.1267 2.0870 29 1 3.4969 -1.4828 2.1905 30 1 4.5659 -0.1286 1.6251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330785748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:08 Heat of formation + Delta-G solvation = -30.383290 kcal Electronic energy + Delta-G solvation = -17246.769235 eV Core-core repulsion = 14238.564270 eV Total energy + Delta-G solvation = -3008.204966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.04337 -39.62710 -37.77886 -36.26747 -34.71945 -32.65413 -29.90691 -28.49228 -26.46766 -25.42522 -24.61925 -20.71038 -19.84624 -18.97815 -17.68857 -17.40141 -17.11001 -16.66238 -16.29798 -15.63375 -14.92499 -14.55648 -13.91654 -13.71651 -13.30033 -13.09451 -12.90416 -12.56626 -12.43365 -12.27066 -11.92080 -11.29726 -11.06759 -10.68441 -10.26813 -10.22006 -10.15772 -9.56695 -9.28451 -9.07930 -8.79618 -8.24377 -6.52166 -4.59197 2.32039 2.61306 2.86988 2.90466 2.91954 3.07060 3.41448 3.82071 3.92581 4.33898 4.44320 4.60585 4.87903 4.95407 5.32600 5.41844 5.52430 5.83583 5.95441 6.02287 6.11649 6.23671 6.27236 6.46583 6.73249 7.06824 7.90071 8.08376 8.13511 8.33892 8.38995 8.51947 9.04466 10.59859 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.040382 B = 0.006398 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.212730 B = 4375.592462 C = 4557.088491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.081 3.919 3 Si 0.860 3.140 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.535 4.535 8 H 0.093 0.907 9 C 0.196 3.804 10 O -0.550 6.550 11 C 0.122 3.878 12 N -0.631 5.631 13 C 0.532 3.468 14 O -0.546 6.546 15 C 0.119 3.881 16 H 0.125 0.875 17 C -0.164 4.164 18 C 0.536 3.464 19 O -0.508 6.508 20 N -0.721 5.721 21 C 0.058 3.942 22 H 0.272 0.728 23 H 0.352 0.648 24 H 0.073 0.927 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.407 0.593 29 H 0.099 0.901 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.079 2.197 4.908 9.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.125 4.125 3 Si 0.689 3.311 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.573 4.573 8 H 0.111 0.889 9 C 0.155 3.845 10 O -0.362 6.362 11 C 0.000 4.000 12 N -0.365 5.365 13 C 0.319 3.681 14 O -0.424 6.424 15 C 0.010 3.990 16 H 0.142 0.858 17 C -0.205 4.205 18 C 0.321 3.679 19 O -0.381 6.381 20 N -0.381 5.381 21 C -0.065 4.065 22 H 0.083 0.917 23 H 0.205 0.795 24 H 0.092 0.908 25 H 0.115 0.885 26 H 0.143 0.857 27 H 0.136 0.864 28 H 0.248 0.752 29 H 0.117 0.883 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.157 0.981 5.020 10.489 hybrid contribution 0.347 1.506 -0.259 1.567 sum 9.504 2.487 4.761 10.917 Atomic orbital electron populations 1.69842 1.06073 1.27775 1.47104 1.25013 0.94937 0.99009 0.93565 0.87313 0.80198 0.84374 0.79240 1.19265 1.20932 1.18307 1.21126 0.87231 0.95816 1.53120 0.88861 1.20278 0.92502 0.87410 0.84323 1.86473 1.64432 1.25012 1.60261 1.23218 0.86411 0.97721 0.92605 1.49670 1.09625 1.37157 1.40023 1.19792 0.80837 0.83915 0.83516 1.90704 1.66083 1.31742 1.53882 1.22189 0.81956 0.99995 0.94837 0.85774 1.23905 0.97733 1.04281 0.94546 1.21935 0.88794 0.75876 0.81266 1.90762 1.63399 1.43611 1.40314 1.48405 1.11482 1.63318 1.14896 1.24623 0.87769 0.91537 1.02587 0.91740 0.79489 0.90838 0.88471 0.85699 0.86379 0.75188 0.88254 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.16 13.96 55.43 0.77 -22.38 16 2 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.86 17.52 24.42 -169.99 -4.15 13.37 16 4 H -0.27 -5.35 7.06 56.52 0.40 -4.96 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -4.77 5.50 56.52 0.31 -4.46 16 7 C -0.54 -12.80 9.28 -34.44 -0.32 -13.12 16 8 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.20 4.06 1.10 -91.12 -0.10 3.96 16 10 O -0.55 -11.96 13.33 -35.23 -0.47 -12.43 16 11 C 0.12 2.31 8.02 -8.51 -0.07 2.24 16 12 N -0.63 -11.00 3.69 -185.05 -0.68 -11.68 16 13 C 0.53 8.98 7.60 -10.99 -0.08 8.90 16 14 O -0.55 -11.13 17.45 5.55 0.10 -11.04 16 15 C 0.12 1.47 4.89 -68.38 -0.33 1.14 16 16 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.16 -1.74 7.90 -27.14 -0.21 -1.96 16 18 C 0.54 7.33 9.85 -10.26 -0.10 7.23 16 19 O -0.51 -8.66 18.03 5.56 0.10 -8.56 16 20 N -0.72 -9.07 6.89 -59.11 -0.41 -9.48 16 21 C 0.06 0.99 7.29 -8.37 -0.06 0.93 16 22 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 23 H 0.35 7.31 3.16 45.56 0.14 7.46 16 24 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 25 H 0.10 1.69 8.10 -51.93 -0.42 1.27 16 26 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.12 1.25 8.00 -51.93 -0.42 0.84 16 28 H 0.41 4.65 8.96 -40.82 -0.37 4.28 16 29 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 30 H 0.07 1.05 7.15 -51.93 -0.37 0.68 16 LS Contribution 263.09 15.07 3.96 3.96 Total: -1.00 -30.52 263.09 -4.92 -35.45 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -2.77 Total: 11.58 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: -1.38 Total: 11.20 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.32 Total: -43.54 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.27 Total: -32.03 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -4.15 Total: 13.37 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.52 -4.92 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330785748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.063 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds