Wall clock time and date at job start Sun Mar 29 2020 22:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48500 * 109.47059 * 269.99741 * 3 2 1 5 5 H 1.48495 * 109.47251 * 30.00345 * 3 2 1 6 6 H 1.48504 * 109.46955 * 150.00163 * 3 2 1 7 7 C 1.37874 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00176 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99824 * 179.97438 * 7 2 1 10 10 O 1.42898 * 113.27890 * 313.06427 * 9 7 2 11 11 C 1.53493 * 114.20428 * 179.97438 * 9 7 2 12 12 N 1.47069 * 87.98602 * 220.14715 * 11 9 7 13 13 C 1.34769 * 136.05803 * 207.08654 * 12 11 9 14 14 O 1.21284 * 120.00341 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00181 * 179.97438 * 13 12 11 16 16 H 1.08998 * 112.98813 * 308.45457 * 15 13 12 17 17 C 1.53737 * 113.70226 * 79.99991 * 15 13 12 18 18 C 1.51515 * 86.60407 * 114.40597 * 17 15 13 19 19 O 1.21279 * 134.17314 * 179.97438 * 18 17 15 20 20 N 1.35841 * 91.65092 * 359.97438 * 18 17 15 21 21 C 1.47069 * 87.88233 * 27.34168 * 12 11 9 22 22 H 0.96996 * 120.00025 * 359.97438 * 1 2 3 23 23 H 0.96699 * 114.00037 * 46.94017 * 10 9 7 24 24 H 1.09004 * 113.46679 * 105.36905 * 11 9 7 25 25 H 1.09003 * 113.47070 * 334.93097 * 11 9 7 26 26 H 1.09002 * 113.68508 * 228.82599 * 17 15 13 27 27 H 1.08991 * 113.69407 * 359.97438 * 17 15 13 28 28 H 0.96990 * 132.38021 * 180.02562 * 20 18 17 29 29 H 1.09002 * 113.46487 * 87.43827 * 21 12 11 30 30 H 1.09001 * 113.46694 * 217.87586 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 8 4.0759 -0.2975 -0.9601 11 6 4.1409 -2.5940 -0.0010 12 7 5.1448 -2.0861 0.9461 13 6 6.4190 -2.3882 1.2643 14 8 6.9899 -3.2909 0.6898 15 6 7.1351 -1.6035 2.3333 16 1 7.0831 -0.5260 2.1774 17 6 6.7775 -2.0391 3.7637 18 6 8.2175 -2.4937 3.8887 19 8 8.8671 -3.0092 4.7736 20 7 8.4943 -2.0965 2.6195 21 6 4.1440 -1.1075 1.3976 22 1 -0.4850 0.8400 0.0004 23 1 3.6773 0.5835 -0.9572 24 1 4.5602 -2.8815 -0.9653 25 1 3.4930 -3.3612 0.4230 26 1 6.5214 -1.2096 4.4228 27 1 6.0556 -2.8545 3.8057 28 1 9.3044 -2.1267 2.0870 29 1 3.4969 -1.4828 2.1905 30 1 4.5659 -0.1286 1.6251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330785748.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:08 Heat of formation + Delta-G solvation = -58.000819 kcal Electronic energy + Delta-G solvation = -17247.966821 eV Core-core repulsion = 14238.564270 eV Total energy + Delta-G solvation = -3009.402551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.17094 -40.99934 -39.17210 -37.44637 -36.31984 -34.50157 -31.27072 -29.61185 -27.92067 -26.89095 -25.93838 -22.19676 -20.91439 -20.26892 -19.35170 -18.54021 -18.41620 -18.11449 -17.58731 -16.88033 -16.33116 -15.81797 -15.57419 -15.20586 -14.85982 -14.43387 -14.19072 -14.06589 -13.81217 -13.26769 -12.95685 -12.85692 -12.59268 -12.34607 -11.86073 -11.60548 -11.26012 -11.09262 -10.99745 -10.53696 -10.22960 -9.69245 -8.37627 -6.50490 1.26794 1.30625 1.33637 1.39223 1.47677 1.67648 2.23015 2.30285 2.81030 2.87928 3.18982 3.37343 3.50025 3.86132 4.06181 4.36206 4.50146 4.58075 4.65225 4.74548 4.77508 4.84279 5.00908 5.11875 5.32590 5.76029 6.07207 6.58640 6.69961 6.76119 6.96725 7.16709 7.18378 8.77632 Molecular weight = 240.09amu Principal moments of inertia in cm(-1) A = 0.040382 B = 0.006398 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.212730 B = 4375.592462 C = 4557.088491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.026 3.974 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.218 1.218 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.180 3.820 10 O -0.559 6.559 11 C 0.117 3.883 12 N -0.628 5.628 13 C 0.529 3.471 14 O -0.588 6.588 15 C 0.126 3.874 16 H 0.163 0.837 17 C -0.145 4.145 18 C 0.527 3.473 19 O -0.550 6.550 20 N -0.721 5.721 21 C 0.075 3.925 22 H 0.273 0.727 23 H 0.356 0.644 24 H 0.060 0.940 25 H 0.105 0.895 26 H 0.167 0.833 27 H 0.120 0.880 28 H 0.409 0.591 29 H 0.116 0.884 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.461 4.088 6.142 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.175 4.175 3 Si 0.743 3.257 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.142 1.142 7 C -0.578 4.578 8 H 0.075 0.925 9 C 0.139 3.861 10 O -0.371 6.371 11 C -0.006 4.006 12 N -0.361 5.361 13 C 0.318 3.682 14 O -0.469 6.469 15 C 0.017 3.983 16 H 0.180 0.820 17 C -0.185 4.185 18 C 0.314 3.686 19 O -0.426 6.426 20 N -0.379 5.379 21 C -0.047 4.047 22 H 0.082 0.918 23 H 0.209 0.791 24 H 0.079 0.921 25 H 0.123 0.877 26 H 0.185 0.815 27 H 0.138 0.862 28 H 0.251 0.749 29 H 0.133 0.867 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.555 2.874 6.249 12.598 hybrid contribution -0.123 0.789 -0.747 1.094 sum 10.431 3.663 5.501 12.349 Atomic orbital electron populations 1.69998 1.08183 1.28829 1.49260 1.25852 0.95588 1.03004 0.93019 0.86337 0.80434 0.79122 0.79778 1.18963 1.21168 1.14156 1.21250 0.89310 0.94577 1.52645 0.92528 1.20335 0.90658 0.88440 0.86662 1.86471 1.64194 1.25372 1.61088 1.23185 0.87203 0.97282 0.92909 1.49613 1.09845 1.37061 1.39573 1.20637 0.80189 0.83572 0.83766 1.90694 1.66761 1.33767 1.55662 1.22320 0.81044 1.00933 0.93970 0.81987 1.23986 0.95316 1.05555 0.93647 1.22516 0.90091 0.75065 0.80927 1.90739 1.64793 1.45377 1.41694 1.48543 1.11848 1.62823 1.14698 1.24422 0.87342 0.92952 1.00006 0.91771 0.79067 0.92141 0.87695 0.81527 0.86156 0.74922 0.86653 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.05 13.96 21.45 0.30 -49.75 16 2 C 0.03 1.29 5.47 84.65 0.46 1.75 16 3 Si 0.92 34.29 24.42 68.60 1.68 35.96 16 4 H -0.26 -9.69 7.06 99.48 0.70 -8.99 16 5 H -0.28 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.22 -6.70 5.50 99.48 0.55 -6.15 16 7 C -0.54 -25.85 9.28 25.60 0.24 -25.62 16 8 H 0.06 3.03 8.06 -2.91 -0.02 3.01 16 9 C 0.18 7.10 1.10 -11.12 -0.01 7.08 16 10 O -0.56 -22.83 13.33 -148.98 -1.99 -24.82 16 11 C 0.12 4.30 8.02 83.18 0.67 4.97 16 12 N -0.63 -20.00 3.69 -858.23 -3.16 -23.16 16 13 C 0.53 16.31 7.60 87.66 0.67 16.98 16 14 O -0.59 -23.19 17.45 -3.04 -0.05 -23.25 16 15 C 0.13 2.55 4.89 44.22 0.22 2.77 16 16 H 0.16 2.21 8.14 -2.39 -0.02 2.19 16 17 C -0.14 -2.42 7.90 30.37 0.24 -2.18 16 18 C 0.53 13.07 9.85 87.64 0.86 13.93 16 19 O -0.55 -18.08 18.03 -3.03 -0.05 -18.13 16 20 N -0.72 -16.10 6.89 -458.72 -3.16 -19.26 16 21 C 0.08 2.25 7.29 83.26 0.61 2.86 16 22 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 23 H 0.36 13.57 3.16 -74.06 -0.23 13.34 16 24 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.11 3.63 8.10 -2.39 -0.02 3.61 16 26 H 0.17 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.12 2.05 8.00 -2.39 -0.02 2.03 16 28 H 0.41 8.53 8.96 -92.72 -0.83 7.70 16 29 H 0.12 3.14 8.10 -2.39 -0.02 3.12 16 30 H 0.10 2.38 7.15 -2.39 -0.02 2.37 16 Total: -1.00 -68.34 263.09 -2.53 -70.87 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.04 Total: 28.99 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 3.95 Total: 22.55 kcal Atomic # 7 Polarization: -86.15 SS G_CDS: -6.02 Total: -92.18 kcal Atomic # 8 Polarization: -64.10 SS G_CDS: -2.09 Total: -66.19 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 1.68 Total: 35.96 kcal Total: -68.34 -2.53 -70.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330785748.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.872 kcal (2) G-P(sol) polarization free energy of solvation -68.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds