Wall clock time and date at job start Sun Mar 29 2020 22:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99866 * 2 1 4 4 O 1.20824 * 120.00345 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99616 * 179.97438 * 3 2 1 6 6 N 1.46500 * 109.47042 * 179.97438 * 5 3 2 7 7 C 1.36946 * 119.99857 * 264.01151 * 6 5 3 8 8 H 1.08001 * 119.99689 * 196.22409 * 7 6 5 9 9 C 1.38806 * 120.00238 * 16.21921 * 7 6 5 10 10 N 1.31620 * 119.99783 * 22.13054 * 9 7 6 11 11 Si 1.86796 * 120.00144 * 202.12496 * 9 7 6 12 12 H 1.48501 * 109.47206 * 90.00403 * 11 9 7 13 13 H 1.48498 * 109.47266 * 210.00072 * 11 9 7 14 14 H 1.48496 * 109.47152 * 330.00143 * 11 9 7 15 15 C 1.46499 * 120.00118 * 84.00797 * 6 5 3 16 16 C 1.50700 * 109.47182 * 89.99816 * 15 6 5 17 17 N 1.33241 * 125.52502 * 89.99746 * 16 15 6 18 18 C 1.30828 * 109.82880 * 180.02562 * 17 16 15 19 19 N 1.34423 * 108.07992 * 0.02562 * 18 17 16 20 20 H 0.96999 * 126.82625 * 179.73013 * 19 18 17 21 21 N 1.30710 * 125.52856 * 270.00417 * 16 15 6 22 22 H 1.08999 * 109.47320 * 60.00076 * 1 2 3 23 23 H 1.08998 * 109.47353 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47292 * 300.00623 * 1 2 3 25 25 H 1.09006 * 109.46875 * 59.99742 * 5 3 2 26 26 H 1.09002 * 109.47212 * 299.99837 * 5 3 2 27 27 H 0.96999 * 119.99935 * 180.02562 * 10 9 7 28 28 H 1.09002 * 109.46969 * 330.00288 * 15 6 5 29 29 H 1.09000 * 109.47361 * 210.00113 * 15 6 5 30 30 H 1.08003 * 125.95890 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 4.2950 3.3004 -1.1800 8 1 4.8432 4.2309 -1.1716 9 6 3.9082 2.7337 -2.3865 10 7 2.9061 1.8811 -2.4218 11 14 4.8096 3.1811 -3.9602 12 1 5.9411 2.2419 -4.1667 13 1 3.8740 3.0893 -5.1098 14 1 5.3301 4.5679 -3.8553 15 6 4.0619 3.4205 1.2612 16 6 5.4444 3.2739 1.8429 17 7 6.4755 4.0827 1.6020 18 6 7.5263 3.6713 2.2638 19 7 7.1805 2.5703 2.9532 20 1 7.7531 2.0428 3.5317 21 7 5.8265 2.3327 2.6654 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 3.9564 0.7804 -0.8892 26 1 3.9557 0.7809 0.8908 27 1 2.6359 1.4847 -3.2649 28 1 3.3285 3.0234 1.9630 29 1 3.8550 4.4748 1.0772 30 1 8.5017 4.1349 2.2569 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350364959.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:26 Heat of formation + Delta-G solvation = 34.840521 kcal Electronic energy + Delta-G solvation = -17440.771653 eV Core-core repulsion = 14467.687755 eV Total energy + Delta-G solvation = -2973.083898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.53952 -38.93241 -36.03852 -34.58724 -32.46623 -31.37079 -30.44427 -28.29534 -26.44976 -25.82170 -22.59309 -22.03261 -20.06686 -19.40008 -17.90937 -16.85644 -16.25043 -15.51271 -15.10741 -15.00335 -14.69645 -14.50958 -13.54372 -13.27474 -13.14427 -12.23618 -12.17288 -11.66375 -11.41887 -11.10153 -10.96436 -10.77746 -10.46528 -10.07921 -9.97488 -9.64413 -9.58795 -9.51874 -9.26957 -9.08913 -8.53344 -7.11999 -5.88868 -3.22508 2.05966 3.07763 3.39839 3.41155 3.47766 3.51914 3.87750 4.06498 4.52264 4.65585 5.20764 5.35179 5.45582 5.48818 5.82180 5.88677 6.11418 6.31590 6.35907 6.51917 6.69325 6.80142 6.97376 7.05524 7.40912 7.72633 7.83080 8.17978 8.62657 9.05084 9.38029 9.71011 10.13022 11.22520 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.017601 B = 0.010515 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.445250 B = 2662.119350 C = 3930.332324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.382 6.382 3 C 0.467 3.533 4 O -0.505 6.505 5 C 0.188 3.812 6 N -0.552 5.552 7 C -0.252 4.252 8 H 0.087 0.913 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.911 3.089 12 H -0.288 1.288 13 H -0.293 1.293 14 H -0.277 1.277 15 C 0.230 3.770 16 C 0.233 3.767 17 N -0.528 5.528 18 C 0.244 3.756 19 N -0.498 5.498 20 H 0.433 0.567 21 N -0.324 5.324 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.257 0.743 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -2.039 8.790 10.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.299 6.299 3 C 0.307 3.693 4 O -0.390 6.390 5 C 0.058 3.942 6 N -0.271 5.271 7 C -0.380 4.380 8 H 0.104 0.896 9 C -0.196 4.196 10 N -0.548 5.548 11 Si 0.741 3.259 12 H -0.215 1.215 13 H -0.219 1.219 14 H -0.202 1.202 15 C 0.099 3.901 16 C -0.052 4.052 17 N -0.256 5.256 18 C -0.056 4.056 19 N -0.216 5.216 20 H 0.277 0.723 21 N -0.154 5.154 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.064 0.936 25 H 0.132 0.868 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 4.632 -2.017 8.611 9.984 hybrid contribution 0.848 -0.059 -0.658 1.075 sum 5.480 -2.076 7.952 9.879 Atomic orbital electron populations 1.22864 0.79736 1.01346 1.01317 1.86538 1.21031 1.36632 1.85728 1.25417 0.93412 0.80214 0.70244 1.90465 1.66675 1.36426 1.45461 1.20300 0.85503 0.86512 1.01841 1.43835 1.74152 1.07151 1.01918 1.19392 1.28891 1.07409 0.82341 0.89566 1.24846 0.96757 0.99992 0.98023 1.69891 1.24933 1.34117 1.25903 0.86128 0.79022 0.78252 0.82472 1.21527 1.21945 1.20248 1.19134 0.84558 0.98488 0.87914 1.26188 0.99177 0.87995 0.91869 1.70477 0.98896 1.31175 1.25059 1.26012 1.00234 0.87746 0.91573 1.48166 1.10203 1.23970 1.39281 0.72331 1.77993 0.90404 1.24470 1.22522 0.92797 0.90119 0.93561 0.86835 0.92691 0.93279 0.91661 0.89814 0.77033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -8.49 10.57 -39.25 -0.41 -8.90 16 3 C 0.47 11.66 6.17 36.01 0.22 11.89 16 4 O -0.51 -14.00 15.88 -18.75 -0.30 -14.29 16 5 C 0.19 4.57 5.49 -5.19 -0.03 4.54 16 6 N -0.55 -13.90 2.01 -175.98 -0.35 -14.25 16 7 C -0.25 -6.89 9.66 -15.06 -0.15 -7.03 16 8 H 0.09 2.37 7.92 -52.49 -0.42 1.95 16 9 C 0.00 0.04 4.86 -17.43 -0.08 -0.04 16 10 N -0.90 -25.91 9.31 55.49 0.52 -25.39 16 11 Si 0.91 22.03 29.61 -169.99 -5.03 16.99 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.23 5.05 6.26 -5.19 -0.03 5.02 16 16 C 0.23 4.71 7.72 -156.86 -1.21 3.49 16 17 N -0.53 -9.96 11.19 -11.98 -0.13 -10.09 16 18 C 0.24 3.29 13.13 -90.66 -1.19 2.10 16 19 N -0.50 -6.65 7.45 29.53 0.22 -6.43 16 20 H 0.43 3.81 8.96 -182.33 -1.63 2.17 16 21 N -0.32 -5.97 12.80 32.42 0.41 -5.55 16 22 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 25 H 0.11 2.97 6.35 -51.93 -0.33 2.64 16 26 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.08 1.85 8.04 -51.93 -0.42 1.43 16 30 H 0.21 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 272.22 15.07 4.10 4.10 Total: -1.00 -34.95 272.22 -6.85 -41.80 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.46 Total: 0.22 kcal Atomic # 6 Polarization: 23.20 SS G_CDS: -1.40 Total: 21.79 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.66 Total: -61.72 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.71 Total: -23.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -34.95 -6.85 -41.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350364959.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.643 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds