Wall clock time and date at job start Sun Mar 29 2020 22:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31292 * 1 3 3 Si 1.86801 * 120.00265 * 2 1 4 4 H 1.48499 * 109.47323 * 269.99913 * 3 2 1 5 5 H 1.48505 * 109.46850 * 29.99689 * 3 2 1 6 6 H 1.48497 * 109.47233 * 149.99881 * 3 2 1 7 7 C 1.38995 * 120.00218 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00485 * 180.02562 * 7 2 1 9 9 N 1.37321 * 119.99512 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.06565 * 180.32784 * 9 7 2 11 11 C 1.35683 * 107.50563 * 180.12098 * 10 9 7 12 12 N 1.40592 * 126.08233 * 179.84189 * 11 10 9 13 13 C 1.34774 * 120.00097 * 179.71828 * 12 11 10 14 14 O 1.21297 * 120.00113 * 359.97438 * 13 12 11 15 15 C 1.50706 * 119.99804 * 180.02562 * 13 12 11 16 16 H 1.08992 * 109.47518 * 54.99618 * 15 13 12 17 17 O 1.42900 * 109.46686 * 174.99876 * 15 13 12 18 18 C 1.53000 * 109.46735 * 294.99273 * 15 13 12 19 19 N 1.46901 * 109.46769 * 180.02562 * 18 15 13 20 20 C 1.40651 * 107.83732 * 359.58023 * 11 10 9 21 21 N 1.30911 * 108.38521 * 0.25928 * 20 11 10 22 22 H 0.96997 * 120.00253 * 0.02562 * 1 2 3 23 23 H 1.07999 * 126.24861 * 359.96198 * 10 9 7 24 24 H 0.97002 * 119.99583 * 359.71000 * 12 11 10 25 25 H 0.96698 * 114.00516 * 60.00193 * 17 15 13 26 26 H 1.09002 * 109.47398 * 300.00410 * 18 15 13 27 27 H 1.09001 * 109.47194 * 60.00591 * 18 15 13 28 28 H 1.00908 * 110.99847 * 180.02562 * 19 18 15 29 29 H 1.00899 * 111.00283 * 303.95539 * 19 18 15 30 30 H 1.07999 * 125.80620 * 180.23043 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.4946 2.0464 -1.4000 5 1 1.4444 2.6527 0.7000 6 1 3.5445 1.4401 0.7000 7 6 2.0079 -1.2037 0.0005 8 1 3.0879 -1.2038 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8750 -3.6405 0.0073 11 6 0.8578 -4.5385 0.0019 12 7 0.9890 -5.9383 0.0029 13 6 -0.1102 -6.7182 0.0028 14 8 -1.2127 -6.2124 0.0023 15 6 0.0306 -8.2186 0.0044 16 1 0.6507 -8.5245 0.8468 17 8 -1.2614 -8.8180 0.1214 18 6 0.6861 -8.6707 -1.3021 19 7 0.8227 -10.1333 -1.3009 20 6 -0.3513 -3.8199 0.0014 21 7 -0.0716 -2.5410 0.0006 22 1 -0.4850 0.8400 -0.0004 23 1 2.9301 -3.8709 0.0131 24 1 1.8707 -6.3427 0.0035 25 1 -1.8677 -8.5891 -0.5963 26 1 0.0659 -8.3647 -2.1447 27 1 1.6715 -8.2135 -1.3914 28 1 1.2538 -10.4570 -2.1539 29 1 1.3393 -10.4476 -0.4931 30 1 -1.3420 -4.2500 0.0011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580056358.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:41 Heat of formation + Delta-G solvation = -0.213997 kcal Electronic energy + Delta-G solvation = -16738.766029 eV Core-core repulsion = 13764.162053 eV Total energy + Delta-G solvation = -2974.603976 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 240.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.11226 -39.00273 -36.62172 -34.50281 -33.81174 -33.13779 -30.32354 -29.00741 -27.22878 -24.85190 -23.10899 -21.11952 -20.47450 -19.47197 -17.83740 -17.24968 -16.64466 -15.81454 -15.50173 -15.11481 -14.91017 -14.68560 -13.90289 -13.80409 -13.35946 -13.05115 -12.94876 -12.52383 -11.75693 -11.58345 -11.44791 -11.27689 -10.99103 -10.59891 -10.55549 -10.21677 -9.20177 -9.08437 -8.94039 -8.81939 -8.09264 -6.74824 -6.58256 -4.25942 2.71192 2.98831 3.03014 3.08523 3.47033 3.62871 3.83795 4.14234 4.37824 4.57798 4.68006 4.78757 4.86336 4.99623 5.19552 5.37646 5.65228 6.20073 6.40745 6.77357 6.85103 6.91807 7.06314 7.13646 7.20510 7.62162 7.82850 8.11747 8.23968 8.58187 8.77908 9.34642 9.63732 10.37736 Molecular weight = 240.10amu Principal moments of inertia in cm(-1) A = 0.066179 B = 0.004802 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.994261 B = 5829.648204 C = 6144.985073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.084 4.084 11 C -0.064 4.064 12 N -0.620 5.620 13 C 0.467 3.533 14 O -0.527 6.527 15 C 0.102 3.898 16 H 0.116 0.884 17 O -0.528 6.528 18 C 0.034 3.966 19 N -0.840 5.840 20 C -0.032 4.032 21 N -0.260 5.260 22 H 0.275 0.725 23 H 0.145 0.855 24 H 0.395 0.605 25 H 0.382 0.618 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.343 0.657 29 H 0.342 0.658 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.005 -12.120 -2.117 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.091 4.909 10 C -0.235 4.235 11 C -0.170 4.170 12 N -0.264 5.264 13 C 0.252 3.748 14 O -0.403 6.403 15 C 0.038 3.962 16 H 0.134 0.866 17 O -0.332 6.332 18 C -0.098 4.098 19 N -0.370 5.370 20 C -0.208 4.208 21 N -0.092 5.092 22 H 0.086 0.914 23 H 0.163 0.837 24 H 0.228 0.772 25 H 0.231 0.769 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 3.963 -10.678 -1.539 11.493 hybrid contribution 2.204 0.129 -0.553 2.276 sum 6.167 -10.548 -2.093 12.397 Atomic orbital electron populations 1.70213 1.06154 1.28052 1.35144 1.25648 0.95703 1.00290 0.95448 0.85822 0.79387 0.79925 0.78979 1.19573 1.20046 1.18803 1.19883 0.91667 0.80560 1.53526 0.86599 1.44561 1.04058 1.03314 1.38974 1.21257 0.96799 0.85407 1.20069 1.17302 0.94339 0.81310 1.24013 1.42583 1.08126 1.04668 1.70975 1.21274 0.84983 0.89566 0.78994 1.90619 1.25805 1.74461 1.49419 1.21726 0.87208 0.88715 0.98589 0.86621 1.86553 1.22422 1.71427 1.52786 1.22434 0.99873 0.89141 0.98351 1.58552 1.60585 1.10077 1.07800 1.24106 0.98017 0.90753 1.07883 1.78264 0.90103 1.15066 1.25730 0.91408 0.83724 0.77163 0.76894 0.89967 0.93984 0.84430 0.84572 0.80779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.51 11.81 55.50 0.66 -20.85 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.94 18.81 29.55 -169.99 -5.02 13.78 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 7 C -0.32 -8.55 10.25 -14.81 -0.15 -8.70 16 8 H 0.12 2.72 7.83 -52.49 -0.41 2.30 16 9 N -0.14 -3.88 3.74 -11.41 -0.04 -3.92 16 10 C -0.08 -1.97 11.49 -16.39 -0.19 -2.15 16 11 C -0.06 -1.47 6.90 -83.84 -0.58 -2.04 16 12 N -0.62 -10.59 5.43 -10.00 -0.05 -10.64 16 13 C 0.47 7.95 7.14 -10.98 -0.08 7.87 16 14 O -0.53 -11.27 13.48 -14.32 -0.19 -11.46 16 15 C 0.10 1.25 3.59 -27.88 -0.10 1.15 16 16 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 17 O -0.53 -7.38 12.86 -55.09 -0.71 -8.09 16 18 C 0.03 0.33 6.40 -3.82 -0.02 0.30 16 19 N -0.84 -7.02 9.49 -10.37 -0.10 -7.11 16 20 C -0.03 -0.85 10.85 -17.03 -0.18 -1.04 16 21 N -0.26 -7.61 10.40 30.80 0.32 -7.29 16 22 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 23 H 0.15 2.78 8.06 -52.49 -0.42 2.36 16 24 H 0.40 5.04 8.61 -40.82 -0.35 4.69 16 25 H 0.38 4.72 8.79 45.56 0.40 5.12 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.35 7.92 -51.93 -0.41 -0.06 16 28 H 0.34 2.23 9.08 -39.29 -0.36 1.88 16 29 H 0.34 2.41 8.99 -39.29 -0.35 2.05 16 30 H 0.18 4.60 5.92 -52.49 -0.31 4.29 16 LS Contribution 269.98 15.07 4.07 4.07 Total: -1.00 -34.50 269.98 -4.68 -39.17 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -2.20 Total: 15.86 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.40 Total: -3.51 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.78 Total: -49.83 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.90 Total: -19.55 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -34.50 -4.68 -39.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580056358.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.958 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds