Wall clock time and date at job start Sun Mar 29 2020 22:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29504 * 119.99648 * 2 1 4 4 O 1.41605 * 120.00344 * 0.02562 * 3 2 1 5 5 C 1.46917 * 120.00562 * 180.02562 * 2 1 3 6 6 N 1.29516 * 119.99958 * 352.74299 * 5 2 1 7 7 O 1.41598 * 119.99468 * 352.72614 * 6 5 2 8 8 C 1.50699 * 120.00249 * 172.73788 * 5 2 1 9 9 H 1.08997 * 115.56238 * 330.70019 * 8 5 2 10 10 C 1.53001 * 117.49799 * 116.39421 * 8 5 2 11 11 H 1.09000 * 117.49692 * 359.97438 * 10 8 5 12 12 C 1.50694 * 117.49825 * 214.98151 * 10 8 5 13 13 H 1.08001 * 120.00219 * 273.08165 * 12 10 8 14 14 C 1.37876 * 120.00387 * 93.08227 * 12 10 8 15 15 N 1.31518 * 119.99584 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00455 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46697 * 90.00247 * 16 14 12 18 18 H 1.48501 * 109.47123 * 209.99982 * 16 14 12 19 19 H 1.48497 * 109.46997 * 330.00571 * 16 14 12 20 20 C 1.52997 * 60.00134 * 107.48945 * 10 8 5 21 21 C 1.52999 * 117.50068 * 252.51201 * 20 10 8 22 22 C 1.53001 * 117.50008 * 107.48970 * 20 10 8 23 23 H 1.08998 * 109.46929 * 263.26647 * 1 2 3 24 24 H 1.09003 * 109.47706 * 23.27347 * 1 2 3 25 25 H 1.09002 * 109.47084 * 143.27212 * 1 2 3 26 26 H 0.96697 * 114.00615 * 180.02562 * 4 3 2 27 27 H 0.96704 * 113.99612 * 180.02562 * 7 6 5 28 28 H 0.97004 * 120.00135 * 179.97438 * 15 14 12 29 29 H 1.08992 * 109.47763 * 128.62236 * 21 20 10 30 30 H 1.09007 * 109.47345 * 248.62479 * 21 20 10 31 31 H 1.09006 * 109.47074 * 8.61692 * 21 20 10 32 32 H 1.09003 * 109.46827 * 343.54397 * 22 20 10 33 33 H 1.09004 * 109.47176 * 103.53814 * 22 20 10 34 34 H 1.08991 * 109.47166 * 223.54236 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1544 1.1216 0.0000 4 8 1.4464 2.3479 0.0005 5 6 2.2417 -1.2723 -0.0006 6 7 1.6020 -2.3895 0.1406 7 8 0.2200 -2.3799 0.4489 8 6 3.7396 -1.2773 -0.1655 9 1 4.1514 -0.4533 -0.7482 10 6 4.5770 -1.8055 1.0010 11 1 4.0444 -2.1490 1.8878 12 6 5.9079 -1.1466 1.2565 13 1 6.7896 -1.4907 0.7363 14 6 6.0002 -0.1044 2.1544 15 7 4.9266 0.3143 2.7883 16 14 7.6501 0.7119 2.4718 17 1 7.8347 1.8399 1.5237 18 1 7.6889 1.2248 3.8648 19 1 8.7383 -0.2799 2.2789 20 6 4.4336 -2.6365 -0.2757 21 6 3.5536 -3.8864 -0.2100 22 6 5.6525 -2.7348 -1.1952 23 1 -0.3633 -0.1205 1.0206 24 1 -0.3634 0.9440 -0.4060 25 1 -0.3633 -0.8237 -0.6146 26 1 2.0147 3.1303 0.0001 27 1 -0.1699 -3.2607 0.5351 28 1 4.9915 1.0473 3.4204 29 1 2.8308 -3.8652 -1.0255 30 1 4.1778 -4.7754 -0.3007 31 1 3.0254 -3.9092 0.7433 32 1 6.3653 -1.9511 -0.9387 33 1 6.1240 -3.7097 -1.0705 34 1 5.3366 -2.6139 -2.2313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005165049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:48 Heat of formation + Delta-G solvation = 47.227799 kcal Electronic energy + Delta-G solvation = -17725.855542 eV Core-core repulsion = 14856.849140 eV Total energy + Delta-G solvation = -2869.006402 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.60141 -36.86516 -36.01483 -33.73430 -32.42513 -31.12820 -28.47132 -27.75053 -26.62103 -25.46036 -23.12730 -20.53530 -18.60608 -17.76733 -16.96296 -16.38320 -16.23733 -14.87297 -14.65709 -14.42150 -14.22277 -13.53007 -13.11272 -13.03329 -12.63749 -12.16246 -12.09925 -11.91867 -11.57889 -11.44432 -11.19002 -10.94992 -10.78302 -10.57422 -10.33310 -10.19127 -9.50458 -9.49451 -9.19918 -8.97702 -8.59030 -8.15228 -7.98096 -6.08987 -4.11680 1.56365 3.23385 3.31162 3.35072 3.37522 3.39030 3.73360 4.36463 4.68463 5.06573 5.34074 5.52778 5.88644 5.92517 5.96086 6.06149 6.17933 6.28317 6.44687 6.51118 6.53782 6.59328 6.74491 6.91279 6.94676 7.01002 7.06094 7.37452 7.40550 7.60130 7.87318 8.02345 8.23625 8.34481 8.88147 9.50366 10.99746 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.009838 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.340921 B = 2845.372468 C = 3815.027297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.120 3.880 3 N -0.272 5.272 4 O -0.418 6.418 5 C 0.241 3.759 6 N -0.320 5.320 7 O -0.422 6.422 8 C -0.127 4.127 9 H 0.115 0.885 10 C 0.080 3.920 11 H 0.067 0.933 12 C -0.501 4.501 13 H 0.070 0.930 14 C 0.072 3.928 15 N -0.869 5.869 16 Si 0.892 3.108 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.143 4.143 21 C -0.092 4.092 22 C -0.107 4.107 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.402 0.598 27 H 0.387 0.613 28 H 0.262 0.738 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.046 0.954 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 -2.380 -5.559 8.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.072 4.072 3 N -0.017 5.017 4 O -0.327 6.327 5 C 0.054 3.946 6 N -0.070 5.070 7 O -0.325 6.325 8 C -0.148 4.148 9 H 0.133 0.867 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.539 4.539 13 H 0.088 0.912 14 C -0.133 4.133 15 N -0.504 5.504 16 Si 0.720 3.280 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.164 4.164 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.250 0.750 27 H 0.234 0.766 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.434 -2.513 -5.443 8.091 hybrid contribution -0.282 1.310 0.316 1.377 sum -5.716 -1.203 -5.127 7.772 Atomic orbital electron populations 1.21232 0.91014 1.02739 1.03869 1.24083 0.94939 0.92091 0.96107 1.77074 1.22545 0.91390 1.10730 1.88316 1.35512 1.13780 1.95056 1.23048 0.95171 0.85103 0.91275 1.77353 0.90541 1.22368 1.16764 1.88627 1.18724 1.33675 1.91458 1.21546 0.83117 0.97932 1.12169 0.86741 1.20132 0.94500 0.92934 0.86472 0.91553 1.20676 0.92571 1.16577 1.24032 0.91206 1.25041 0.96415 0.96610 0.95219 1.70006 1.28072 1.26392 1.25936 0.86593 0.84112 0.79804 0.77512 1.20522 1.21221 1.19649 1.21633 0.97897 0.90322 1.04557 1.21329 0.97231 0.94561 1.01820 1.21270 0.96812 1.01644 0.96707 0.90253 0.91596 0.89451 0.74997 0.76636 0.92858 0.93276 0.94420 0.92126 0.90831 0.93501 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.14 36.00 0.29 -1.94 16 2 C 0.12 2.48 7.07 -80.06 -0.57 1.91 16 3 N -0.27 -5.79 11.51 34.95 0.40 -5.39 16 4 O -0.42 -7.45 13.63 -11.47 -0.16 -7.60 16 5 C 0.24 5.10 6.76 -80.06 -0.54 4.56 16 6 N -0.32 -6.07 7.78 34.95 0.27 -5.80 16 7 O -0.42 -6.63 10.67 -11.47 -0.12 -6.75 16 8 C -0.13 -2.85 5.15 -91.77 -0.47 -3.32 16 9 H 0.11 2.70 8.01 -51.93 -0.42 2.29 16 10 C 0.08 1.97 4.81 -91.78 -0.44 1.53 16 11 H 0.07 1.80 8.05 -51.93 -0.42 1.39 16 12 C -0.50 -13.16 8.37 -34.44 -0.29 -13.45 16 13 H 0.07 1.77 6.16 -52.49 -0.32 1.45 16 14 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 15 N -0.87 -24.67 13.29 55.43 0.74 -23.93 16 16 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 20 C -0.14 -2.97 2.70 -154.51 -0.42 -3.38 16 21 C -0.09 -1.68 8.03 37.16 0.30 -1.38 16 22 C -0.11 -2.00 9.49 37.16 0.35 -1.65 16 23 H 0.08 1.37 7.91 -51.93 -0.41 0.96 16 24 H 0.07 1.08 7.14 -51.93 -0.37 0.71 16 25 H 0.09 1.40 6.33 -51.93 -0.33 1.07 16 26 H 0.40 5.30 9.28 45.56 0.42 5.72 16 27 H 0.39 4.14 9.28 45.56 0.42 4.56 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.05 0.86 7.27 -51.93 -0.38 0.48 16 30 H 0.04 0.62 8.02 -51.92 -0.42 0.20 16 31 H 0.06 1.15 6.73 -51.93 -0.35 0.80 16 32 H 0.07 1.47 5.75 -51.93 -0.30 1.17 16 33 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 288.15 15.07 4.34 4.34 Total: -1.00 -30.37 288.15 -4.27 -34.64 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -2.84 Total: 10.18 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -1.88 Total: -15.29 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 1.41 Total: -35.11 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.28 Total: -14.35 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.37 -4.27 -34.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005165049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.867 kcal (2) G-P(sol) polarization free energy of solvation -30.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds