Wall clock time and date at job start Sun Mar 29 2020 22:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29504 * 119.99648 * 2 1 4 4 O 1.41605 * 120.00344 * 0.02562 * 3 2 1 5 5 C 1.46917 * 120.00562 * 180.02562 * 2 1 3 6 6 N 1.29516 * 119.99958 * 352.74299 * 5 2 1 7 7 O 1.41598 * 119.99468 * 352.72614 * 6 5 2 8 8 C 1.50699 * 120.00249 * 172.73788 * 5 2 1 9 9 H 1.08997 * 115.56238 * 330.70019 * 8 5 2 10 10 C 1.53001 * 117.49799 * 116.39421 * 8 5 2 11 11 H 1.09000 * 117.49692 * 359.97438 * 10 8 5 12 12 C 1.50694 * 117.49825 * 214.98151 * 10 8 5 13 13 H 1.08001 * 120.00219 * 273.08165 * 12 10 8 14 14 C 1.37876 * 120.00387 * 93.08227 * 12 10 8 15 15 N 1.31518 * 119.99584 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00455 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46697 * 90.00247 * 16 14 12 18 18 H 1.48501 * 109.47123 * 209.99982 * 16 14 12 19 19 H 1.48497 * 109.46997 * 330.00571 * 16 14 12 20 20 C 1.52997 * 60.00134 * 107.48945 * 10 8 5 21 21 C 1.52999 * 117.50068 * 252.51201 * 20 10 8 22 22 C 1.53001 * 117.50008 * 107.48970 * 20 10 8 23 23 H 1.08998 * 109.46929 * 263.26647 * 1 2 3 24 24 H 1.09003 * 109.47706 * 23.27347 * 1 2 3 25 25 H 1.09002 * 109.47084 * 143.27212 * 1 2 3 26 26 H 0.96697 * 114.00615 * 180.02562 * 4 3 2 27 27 H 0.96704 * 113.99612 * 180.02562 * 7 6 5 28 28 H 0.97004 * 120.00135 * 179.97438 * 15 14 12 29 29 H 1.08992 * 109.47763 * 128.62236 * 21 20 10 30 30 H 1.09007 * 109.47345 * 248.62479 * 21 20 10 31 31 H 1.09006 * 109.47074 * 8.61692 * 21 20 10 32 32 H 1.09003 * 109.46827 * 343.54397 * 22 20 10 33 33 H 1.09004 * 109.47176 * 103.53814 * 22 20 10 34 34 H 1.08991 * 109.47166 * 223.54236 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1544 1.1216 0.0000 4 8 1.4464 2.3479 0.0005 5 6 2.2417 -1.2723 -0.0006 6 7 1.6020 -2.3895 0.1406 7 8 0.2200 -2.3799 0.4489 8 6 3.7396 -1.2773 -0.1655 9 1 4.1514 -0.4533 -0.7482 10 6 4.5770 -1.8055 1.0010 11 1 4.0444 -2.1490 1.8878 12 6 5.9079 -1.1466 1.2565 13 1 6.7896 -1.4907 0.7363 14 6 6.0002 -0.1044 2.1544 15 7 4.9266 0.3143 2.7883 16 14 7.6501 0.7119 2.4718 17 1 7.8347 1.8399 1.5237 18 1 7.6889 1.2248 3.8648 19 1 8.7383 -0.2799 2.2789 20 6 4.4336 -2.6365 -0.2757 21 6 3.5536 -3.8864 -0.2100 22 6 5.6525 -2.7348 -1.1952 23 1 -0.3633 -0.1205 1.0206 24 1 -0.3634 0.9440 -0.4060 25 1 -0.3633 -0.8237 -0.6146 26 1 2.0147 3.1303 0.0001 27 1 -0.1699 -3.2607 0.5351 28 1 4.9915 1.0473 3.4204 29 1 2.8308 -3.8652 -1.0255 30 1 4.1778 -4.7754 -0.3007 31 1 3.0254 -3.9092 0.7433 32 1 6.3653 -1.9511 -0.9387 33 1 6.1240 -3.7097 -1.0705 34 1 5.3366 -2.6139 -2.2313 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005165049.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:47 Heat of formation + Delta-G solvation = 25.097191 kcal Electronic energy + Delta-G solvation = -17726.815197 eV Core-core repulsion = 14856.849140 eV Total energy + Delta-G solvation = -2869.966057 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.22354 -38.42080 -37.47828 -35.19484 -34.38735 -32.63664 -30.09817 -29.23510 -28.15033 -27.31728 -24.77415 -22.25283 -20.25953 -19.42261 -18.44067 -18.18511 -17.82487 -16.56081 -16.33196 -15.96059 -15.71489 -15.18871 -14.79764 -14.48136 -14.11350 -13.88517 -13.55251 -13.36236 -13.25587 -13.05134 -12.78016 -12.66103 -12.54705 -12.22113 -12.01429 -11.81406 -11.24181 -11.02543 -10.88341 -10.71705 -10.36157 -9.84926 -9.62526 -8.11237 -6.18907 0.01176 1.44131 1.45486 1.55405 1.71268 2.02064 2.34366 2.44842 3.11383 3.17681 3.59675 4.11397 4.29904 4.35753 4.55522 4.59418 4.67220 4.71703 4.85886 5.01449 5.05655 5.08604 5.23760 5.36727 5.40317 5.47917 5.58977 5.64601 5.78548 5.90307 6.05881 6.38263 6.74006 6.86504 6.91279 7.46174 8.97943 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.009838 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.340921 B = 2845.372468 C = 3815.027297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.108 3.892 3 N -0.309 5.309 4 O -0.411 6.411 5 C 0.214 3.786 6 N -0.306 5.306 7 O -0.409 6.409 8 C -0.122 4.122 9 H 0.095 0.905 10 C 0.047 3.953 11 H 0.030 0.970 12 C -0.509 4.509 13 H 0.074 0.926 14 C 0.021 3.979 15 N -0.908 5.908 16 Si 0.954 3.046 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.122 4.122 21 C -0.086 4.086 22 C -0.106 4.106 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.418 0.582 27 H 0.411 0.589 28 H 0.258 0.742 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -3.371 -6.684 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 N -0.053 5.053 4 O -0.324 6.324 5 C 0.026 3.974 6 N -0.052 5.052 7 O -0.320 6.320 8 C -0.142 4.142 9 H 0.113 0.887 10 C 0.027 3.973 11 H 0.048 0.952 12 C -0.547 4.547 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.546 5.546 16 Si 0.780 3.220 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.163 4.163 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.120 0.880 26 H 0.270 0.730 27 H 0.263 0.737 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.778 -3.543 -6.585 9.450 hybrid contribution -0.318 1.534 0.650 1.696 sum -6.096 -2.009 -5.935 8.742 Atomic orbital electron populations 1.21190 0.88700 1.03695 1.04057 1.24339 0.96531 0.91702 0.95786 1.76960 1.24102 0.92667 1.11614 1.88274 1.35774 1.13488 1.94834 1.22829 0.94809 0.86125 0.93649 1.77171 0.92366 1.21597 1.14054 1.88606 1.16493 1.36235 1.90645 1.21210 0.84384 0.98552 1.10100 0.88719 1.19860 0.94399 0.96229 0.86799 0.95188 1.21010 0.93596 1.16311 1.23747 0.90778 1.25806 0.99524 0.97365 0.95292 1.70149 1.30100 1.27211 1.27111 0.85614 0.80430 0.78930 0.77043 1.20220 1.21417 1.18523 1.21863 0.98372 0.90490 1.01514 1.21287 0.97346 0.94040 1.01607 1.21279 0.95563 1.02139 0.97334 0.90299 0.90984 0.88027 0.73045 0.73725 0.93309 0.92014 0.92185 0.93307 0.92660 0.91450 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.14 71.23 0.58 -3.29 16 2 C 0.11 4.42 7.07 45.18 0.32 4.74 16 3 N -0.31 -13.26 11.51 -43.34 -0.50 -13.76 16 4 O -0.41 -14.43 13.63 -38.80 -0.53 -14.96 16 5 C 0.21 8.97 6.76 45.17 0.31 9.28 16 6 N -0.31 -11.10 7.78 -43.33 -0.34 -11.44 16 7 O -0.41 -11.71 10.67 -38.78 -0.41 -12.12 16 8 C -0.12 -5.53 5.15 -11.54 -0.06 -5.59 16 9 H 0.09 4.61 8.01 -2.39 -0.02 4.59 16 10 C 0.05 2.40 4.81 -11.54 -0.06 2.34 16 11 H 0.03 1.71 8.05 -2.39 -0.02 1.69 16 12 C -0.51 -27.30 8.37 25.60 0.21 -27.08 16 13 H 0.07 3.79 6.16 -2.91 -0.02 3.77 16 14 C 0.02 1.14 5.46 84.65 0.46 1.61 16 15 N -0.91 -53.35 13.29 21.45 0.28 -53.07 16 16 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 C -0.12 -4.93 2.70 -52.18 -0.14 -5.07 16 21 C -0.09 -2.94 8.03 71.98 0.58 -2.36 16 22 C -0.11 -3.77 9.49 71.98 0.68 -3.08 16 23 H 0.08 2.59 7.91 -2.39 -0.02 2.57 16 24 H 0.07 2.25 7.14 -2.39 -0.02 2.23 16 25 H 0.10 2.98 6.33 -2.39 -0.02 2.97 16 26 H 0.42 10.88 9.28 -74.06 -0.69 10.19 16 27 H 0.41 7.30 9.28 -74.05 -0.69 6.61 16 28 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.06 1.97 7.27 -2.39 -0.02 1.95 16 30 H 0.06 1.79 8.02 -2.38 -0.02 1.77 16 31 H 0.05 1.78 6.73 -2.38 -0.02 1.77 16 32 H 0.05 2.16 5.75 -2.39 -0.01 2.15 16 33 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -66.30 288.15 3.18 -63.11 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.24 Total: 25.73 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 2.89 Total: -28.51 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -0.55 Total: -78.26 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.94 Total: -27.08 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -66.30 3.18 -63.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005165049.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.211 kcal (2) G-P(sol) polarization free energy of solvation -66.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds