Wall clock time and date at job start Sun Mar 29 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 119.99955 * 2 1 4 4 H 1.48500 * 109.46967 * 269.99248 * 3 2 1 5 5 H 1.48492 * 109.47406 * 29.99801 * 3 2 1 6 6 H 1.48502 * 109.47153 * 149.99914 * 3 2 1 7 7 C 1.37884 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99823 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99728 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46888 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47182 * 179.97438 * 10 9 7 12 12 C 1.31001 * 120.00033 * 124.99773 * 11 10 9 13 13 C 1.50703 * 120.00186 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.47171 * 135.00344 * 13 12 11 15 15 C 1.42902 * 114.00186 * 180.02562 * 14 13 12 16 16 H 1.09001 * 109.48013 * 310.02211 * 15 14 13 17 17 C 1.53088 * 109.48082 * 189.99837 * 15 14 13 18 18 C 1.53179 * 109.16382 * 182.40653 * 17 15 14 19 19 C 1.53182 * 109.03398 * 56.98049 * 18 17 15 20 20 C 1.53088 * 109.16258 * 303.02143 * 19 18 17 21 21 O 1.42898 * 109.41759 * 57.61158 * 20 19 18 22 22 H 0.96995 * 120.00182 * 0.02562 * 1 2 3 23 23 H 1.08990 * 109.47318 * 59.99829 * 9 7 2 24 24 H 1.08999 * 109.47024 * 299.99655 * 9 7 2 25 25 H 1.09004 * 109.47405 * 59.99808 * 10 9 7 26 26 H 1.08996 * 109.47460 * 299.99693 * 10 9 7 27 27 H 1.08003 * 120.00498 * 305.00500 * 11 10 9 28 28 H 1.08002 * 119.99954 * 0.02562 * 12 11 10 29 29 H 1.09002 * 109.47152 * 15.00128 * 13 12 11 30 30 H 1.09001 * 109.46980 * 255.00228 * 13 12 11 31 31 H 1.09004 * 109.52251 * 302.31585 * 17 15 14 32 32 H 1.09004 * 109.52304 * 62.49890 * 17 15 14 33 33 H 1.08992 * 109.54410 * 176.84275 * 18 17 15 34 34 H 1.08991 * 109.54182 * 297.11411 * 18 17 15 35 35 H 1.09002 * 109.52028 * 62.92406 * 19 18 17 36 36 H 1.08999 * 109.52144 * 183.04922 * 19 18 17 37 37 H 1.09003 * 109.48094 * 177.59124 * 20 19 18 38 38 H 1.09000 * 109.48040 * 297.61210 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5284 -2.6367 0.0009 12 6 6.1834 -3.2875 0.9302 13 6 7.6905 -3.2871 0.9305 14 8 8.1665 -3.0534 2.2575 15 6 9.5910 -3.0329 2.3689 16 1 10.0062 -3.9168 1.8847 17 6 9.9875 -3.0271 3.8475 18 6 11.5130 -2.9443 3.9587 19 6 12.0005 -1.6935 3.2211 20 6 11.5263 -1.7508 1.7667 21 8 10.1016 -1.8581 1.7355 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8910 24 1 3.8752 -0.6805 -0.8889 25 1 3.6584 -3.1503 -0.8892 26 1 3.6579 -3.1507 0.8907 27 1 6.0685 -2.1001 -0.7651 28 1 5.6434 -3.8243 1.6962 29 1 8.0537 -2.4996 0.2703 30 1 8.0541 -4.2526 0.5788 31 1 9.5389 -2.1651 4.3415 32 1 9.6367 -3.9434 4.3223 33 1 11.7992 -2.8833 5.0086 34 1 11.9599 -3.8306 3.5085 35 1 11.5926 -0.8046 3.7025 36 1 13.0895 -1.6555 3.2490 37 1 11.8339 -0.8428 1.2480 38 1 11.9671 -2.6177 1.2745 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034520578.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:01 Heat of formation + Delta-G solvation = -102.399374 kcal Electronic energy + Delta-G solvation = -16654.823078 eV Core-core repulsion = 13882.868698 eV Total energy + Delta-G solvation = -2771.954379 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85492 -37.32885 -35.28095 -33.99682 -32.82585 -31.10146 -30.11897 -26.81394 -24.98049 -23.67775 -23.29755 -20.74057 -20.30066 -19.22541 -17.48020 -16.92286 -16.59968 -16.06810 -15.21287 -14.68441 -14.45255 -14.33252 -14.14939 -13.29332 -13.19405 -13.06772 -12.78009 -12.49060 -12.21032 -11.66608 -11.54355 -11.44152 -11.33660 -11.02697 -10.88096 -10.73151 -10.16603 -9.93717 -9.87774 -9.75771 -9.56841 -9.13240 -8.52385 -8.48185 -5.99838 -3.97664 2.49484 3.25858 3.35764 3.42979 3.49424 3.87012 4.42501 4.46024 4.50740 4.57351 4.70945 4.73877 5.01938 5.16938 5.29036 5.33965 5.35282 5.38299 5.41411 5.44783 5.56449 5.64280 5.70403 5.77180 5.93180 6.14202 6.32582 6.51735 6.77986 6.87803 7.08734 7.13738 7.24911 7.35914 7.53416 7.84401 8.58446 9.04960 9.62982 11.13647 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.035083 B = 0.003740 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.907989 B = 7484.331042 C = 7878.859832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.081 4.081 11 C -0.112 4.112 12 C -0.193 4.193 13 C 0.099 3.901 14 O -0.360 6.360 15 C 0.254 3.746 16 H 0.051 0.949 17 C -0.142 4.142 18 C -0.120 4.120 19 C -0.161 4.161 20 C 0.071 3.929 21 O -0.404 6.404 22 H 0.263 0.737 23 H 0.018 0.982 24 H 0.012 0.988 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.251 -6.648 5.298 27.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.047 4.047 10 C -0.119 4.119 11 C -0.130 4.130 12 C -0.211 4.211 13 C 0.023 3.977 14 O -0.279 6.279 15 C 0.158 3.842 16 H 0.068 0.932 17 C -0.180 4.180 18 C -0.157 4.157 19 C -0.198 4.198 20 C -0.005 4.005 21 O -0.325 6.325 22 H 0.072 0.928 23 H 0.036 0.964 24 H 0.030 0.970 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 25.839 -6.376 5.374 27.151 hybrid contribution 0.671 0.724 -0.110 0.994 sum 26.510 -5.652 5.265 27.613 Atomic orbital electron populations 1.69918 1.06305 1.26864 1.51345 1.25032 0.94738 0.99214 0.94558 0.86772 0.80494 0.83540 0.78509 1.20294 1.21386 1.18870 1.21172 0.89497 0.94502 1.50686 0.90997 1.19526 0.96912 0.91768 0.96482 1.20706 0.89172 1.00305 1.01670 1.23247 0.97861 0.94675 0.97250 1.22422 0.93080 1.04204 1.01415 1.21494 0.93211 0.99374 0.83611 1.88086 1.18384 1.92260 1.29188 1.22905 0.81543 0.86890 0.92816 0.93202 1.22027 0.96061 1.04422 0.95464 1.21587 0.94690 0.98031 1.01408 1.22254 1.01384 0.99300 0.96907 1.22493 0.80052 1.02080 0.95919 1.87866 1.21332 1.44879 1.78429 0.92773 0.96386 0.96962 0.91542 0.92051 0.87910 0.86780 0.92238 0.93101 0.89921 0.90024 0.90716 0.91663 0.90640 0.90585 0.88562 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.52 -15.34 9.66 -34.44 -0.33 -15.68 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.24 4.02 -27.88 -0.11 -0.35 16 10 C -0.08 -1.69 5.60 -27.89 -0.16 -1.84 16 11 C -0.11 -1.98 9.11 -36.03 -0.33 -2.31 16 12 C -0.19 -3.14 9.50 -36.02 -0.34 -3.48 16 13 C 0.10 1.41 6.23 36.01 0.22 1.64 16 14 O -0.36 -5.44 10.24 -59.04 -0.60 -6.05 16 15 C 0.25 3.03 3.16 37.20 0.12 3.14 16 16 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 17 C -0.14 -1.37 5.79 -26.59 -0.15 -1.52 16 18 C -0.12 -0.83 6.03 -26.54 -0.16 -0.99 16 19 C -0.16 -1.13 6.14 -26.59 -0.16 -1.29 16 20 C 0.07 0.60 6.84 37.20 0.25 0.85 16 21 O -0.40 -5.14 10.25 -59.04 -0.61 -5.74 16 22 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 23 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 24 H 0.01 0.30 7.57 -51.93 -0.39 -0.10 16 25 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 26 H 0.06 1.27 7.79 -51.93 -0.40 0.86 16 27 H 0.10 1.69 7.90 -52.48 -0.41 1.27 16 28 H 0.11 1.85 7.84 -52.49 -0.41 1.44 16 29 H 0.06 0.86 7.61 -51.93 -0.40 0.47 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 311.92 15.07 4.70 4.70 Total: -1.00 -32.80 311.92 -8.28 -41.08 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -6.63 Total: -4.03 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -1.25 Total: -19.96 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.77 Total: -27.83 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.21 Total: -11.79 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.80 -8.28 -41.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034520578.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.315 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds