Wall clock time and date at job start Sun Mar 29 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47001 * 179.97438 * 10 9 7 12 12 C 1.31003 * 119.99423 * 125.00250 * 11 10 9 13 13 C 1.50707 * 119.99533 * 179.97438 * 12 11 10 14 14 O 1.42898 * 109.46926 * 134.99683 * 13 12 11 15 15 C 1.42905 * 114.00262 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.47358 * 54.97928 * 15 14 13 17 17 C 1.53083 * 109.48170 * 175.00457 * 15 14 13 18 18 C 1.53178 * 109.16494 * 177.59529 * 17 15 14 19 19 C 1.53181 * 109.03218 * 303.01895 * 18 17 15 20 20 C 1.53091 * 109.16430 * 56.97768 * 19 18 17 21 21 O 1.42899 * 109.41471 * 302.39058 * 20 19 18 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 24 24 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 25 25 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 26 26 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 27 27 H 1.07993 * 120.00477 * 304.99835 * 11 10 9 28 28 H 1.07991 * 120.00572 * 359.97438 * 12 11 10 29 29 H 1.08991 * 109.47138 * 254.99731 * 13 12 11 30 30 H 1.08998 * 109.47048 * 15.00453 * 13 12 11 31 31 H 1.09008 * 109.52078 * 297.49560 * 17 15 14 32 32 H 1.08997 * 109.52845 * 57.62419 * 17 15 14 33 33 H 1.09004 * 109.54080 * 62.88008 * 18 17 15 34 34 H 1.08998 * 109.54912 * 183.06428 * 18 17 15 35 35 H 1.09005 * 109.52217 * 176.88347 * 19 18 17 36 36 H 1.08999 * 109.52214 * 297.00934 * 19 18 17 37 37 H 1.09009 * 109.48043 * 62.37506 * 20 19 18 38 38 H 1.08996 * 109.47911 * 182.40525 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4920 -4.9670 0.0256 12 6 1.7279 -5.8646 -0.8990 13 6 0.9748 -7.1700 -0.8913 14 8 0.5332 -7.4730 -2.2162 15 6 -0.1952 -8.6980 -2.3203 16 1 -1.0328 -8.6831 -1.6230 17 6 -0.7226 -8.8586 -3.7485 18 6 -1.4503 -10.2012 -3.8678 19 6 -0.4895 -11.3269 -3.4729 20 6 0.0290 -11.0710 -2.0553 21 8 0.6672 -9.7934 -2.0065 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5524 0.9029 24 1 0.6241 -2.5613 -0.8770 25 1 2.8721 -3.6088 -0.8720 26 1 2.8721 -3.5996 0.9080 27 1 0.7577 -5.1624 0.7930 28 1 2.4619 -5.6692 -1.6666 29 1 1.6298 -7.9653 -0.5359 30 1 0.1117 -7.0877 -0.2307 31 1 -1.4151 -8.0476 -3.9743 32 1 0.1112 -8.8315 -4.4499 33 1 -2.3136 -10.2084 -3.2024 34 1 -1.7812 -10.3465 -4.8961 35 1 -1.0152 -12.2814 -3.5016 36 1 0.3486 -11.3516 -4.1693 37 1 -0.8058 -11.0874 -1.3545 38 1 0.7460 -11.8461 -1.7851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034520579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:03 Heat of formation + Delta-G solvation = -110.540594 kcal Electronic energy + Delta-G solvation = -16566.595838 eV Core-core repulsion = 13794.288429 eV Total energy + Delta-G solvation = -2772.307409 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.86127 -37.30715 -35.31573 -33.99797 -33.13091 -30.94315 -29.77402 -26.29147 -24.86080 -23.59160 -23.26606 -21.05234 -20.60637 -19.18098 -17.42944 -16.90616 -16.60343 -16.08245 -15.23120 -14.71153 -14.46399 -14.32029 -13.69631 -13.35188 -13.29243 -13.03399 -12.88767 -12.43126 -11.94981 -11.68861 -11.52562 -11.44070 -11.31656 -10.85817 -10.80265 -10.50392 -10.27231 -10.08772 -9.95787 -9.81218 -9.72802 -8.62717 -8.37980 -8.27531 -6.32220 -4.00870 2.50311 3.29834 3.46287 3.50464 3.66255 3.83718 4.43061 4.47015 4.57713 4.58453 4.72766 4.76569 5.04083 5.16389 5.27195 5.34288 5.40997 5.42436 5.45417 5.54991 5.58014 5.67342 5.70491 5.75613 5.93650 6.16318 6.33883 6.55571 6.79111 6.90189 7.10864 7.13876 7.27185 7.45756 7.61554 8.26297 8.51279 8.92942 9.71660 11.08655 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.056911 B = 0.003162 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.880436 B = 8854.274553 C = 9118.191075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.602 4.602 8 H 0.049 0.951 9 C 0.013 3.987 10 C -0.082 4.082 11 C -0.113 4.113 12 C -0.192 4.192 13 C 0.100 3.900 14 O -0.360 6.360 15 C 0.255 3.745 16 H 0.052 0.948 17 C -0.142 4.142 18 C -0.120 4.120 19 C -0.160 4.160 20 C 0.071 3.929 21 O -0.406 6.406 22 H 0.269 0.731 23 H 0.007 0.993 24 H 0.009 0.991 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 -23.366 -5.158 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.191 4.191 3 Si 0.901 3.099 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.641 4.641 8 H 0.068 0.932 9 C -0.024 4.024 10 C -0.120 4.120 11 C -0.132 4.132 12 C -0.210 4.210 13 C 0.025 3.975 14 O -0.280 6.280 15 C 0.159 3.841 16 H 0.069 0.931 17 C -0.180 4.180 18 C -0.158 4.158 19 C -0.198 4.198 20 C -0.005 4.005 21 O -0.328 6.328 22 H 0.079 0.921 23 H 0.026 0.974 24 H 0.027 0.973 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.255 -21.560 -5.272 22.310 hybrid contribution -0.144 -1.921 0.161 1.933 sum -2.398 -23.481 -5.111 24.151 Atomic orbital electron populations 1.70747 1.06897 1.30629 1.46851 1.25874 0.96584 1.02769 0.93825 0.83502 0.74664 0.75052 0.76710 1.21468 1.21479 1.20999 1.22109 0.94350 0.92036 1.55562 0.93239 1.19181 0.94548 0.92598 0.96113 1.20750 0.98414 0.91687 1.01119 1.23214 0.97901 0.94789 0.97262 1.22429 1.02468 0.94643 1.01438 1.21457 0.96977 0.95933 0.83174 1.88097 1.74650 1.35100 1.30117 1.22939 0.87604 0.78056 0.95535 0.93092 1.22019 1.01410 0.98230 0.96293 1.21590 0.98002 0.93676 1.02499 1.22248 1.00191 0.99116 0.98211 1.22491 0.97704 0.84583 0.95745 1.87825 1.39427 1.15192 1.90340 0.92072 0.97443 0.97295 0.92457 0.91970 0.88033 0.86839 0.91972 0.93264 0.89878 0.90032 0.91588 0.90684 0.90588 0.90718 0.93137 0.88609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.85 13.65 55.43 0.76 -28.09 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.97 29.90 -169.99 -5.08 20.89 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.60 -17.79 9.11 -34.44 -0.31 -18.10 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.01 0.34 4.27 -27.88 -0.12 0.22 16 10 C -0.08 -1.80 5.60 -27.88 -0.16 -1.96 16 11 C -0.11 -2.11 9.11 -36.03 -0.33 -2.43 16 12 C -0.19 -3.29 9.50 -36.02 -0.34 -3.64 16 13 C 0.10 1.51 6.22 36.01 0.22 1.73 16 14 O -0.36 -5.67 10.25 -59.04 -0.61 -6.27 16 15 C 0.25 3.15 3.20 37.20 0.12 3.27 16 16 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 17 C -0.14 -1.44 5.79 -26.60 -0.15 -1.59 16 18 C -0.12 -0.88 6.03 -26.55 -0.16 -1.04 16 19 C -0.16 -1.10 6.14 -26.59 -0.16 -1.27 16 20 C 0.07 0.58 6.84 37.20 0.25 0.84 16 21 O -0.41 -5.01 10.03 -59.04 -0.59 -5.60 16 22 H 0.27 8.45 7.22 -40.82 -0.29 8.16 16 23 H 0.01 0.20 8.01 -51.92 -0.42 -0.21 16 24 H 0.01 0.25 8.00 -51.93 -0.42 -0.17 16 25 H 0.06 1.24 7.79 -51.93 -0.40 0.84 16 26 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 27 H 0.10 1.76 7.90 -52.49 -0.41 1.34 16 28 H 0.11 1.98 7.84 -52.49 -0.41 1.57 16 29 H 0.06 0.89 7.74 -51.93 -0.40 0.49 16 30 H 0.05 0.69 7.86 -51.93 -0.41 0.28 16 31 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -32.82 313.94 -8.63 -41.44 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.60 Total: -3.41 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.24 Total: -23.68 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.76 Total: -28.09 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.20 Total: -11.88 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.82 -8.63 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034520579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.098 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds