Wall clock time and date at job start Sun Mar 29 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47001 * 179.97438 * 10 9 7 12 12 C 1.31003 * 119.99423 * 125.00250 * 11 10 9 13 13 C 1.50707 * 119.99533 * 179.97438 * 12 11 10 14 14 O 1.42898 * 109.46926 * 134.99683 * 13 12 11 15 15 C 1.42905 * 114.00262 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.47358 * 54.97928 * 15 14 13 17 17 C 1.53083 * 109.48170 * 175.00457 * 15 14 13 18 18 C 1.53178 * 109.16494 * 177.59529 * 17 15 14 19 19 C 1.53181 * 109.03218 * 303.01895 * 18 17 15 20 20 C 1.53091 * 109.16430 * 56.97768 * 19 18 17 21 21 O 1.42899 * 109.41471 * 302.39058 * 20 19 18 22 22 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 23 23 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 24 24 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 25 25 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 26 26 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 27 27 H 1.07993 * 120.00477 * 304.99835 * 11 10 9 28 28 H 1.07991 * 120.00572 * 359.97438 * 12 11 10 29 29 H 1.08991 * 109.47138 * 254.99731 * 13 12 11 30 30 H 1.08998 * 109.47048 * 15.00453 * 13 12 11 31 31 H 1.09008 * 109.52078 * 297.49560 * 17 15 14 32 32 H 1.08997 * 109.52845 * 57.62419 * 17 15 14 33 33 H 1.09004 * 109.54080 * 62.88008 * 18 17 15 34 34 H 1.08998 * 109.54912 * 183.06428 * 18 17 15 35 35 H 1.09005 * 109.52217 * 176.88347 * 19 18 17 36 36 H 1.08999 * 109.52214 * 297.00934 * 19 18 17 37 37 H 1.09009 * 109.48043 * 62.37506 * 20 19 18 38 38 H 1.08996 * 109.47911 * 182.40525 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4920 -4.9670 0.0256 12 6 1.7279 -5.8646 -0.8990 13 6 0.9748 -7.1700 -0.8913 14 8 0.5332 -7.4730 -2.2162 15 6 -0.1952 -8.6980 -2.3203 16 1 -1.0328 -8.6831 -1.6230 17 6 -0.7226 -8.8586 -3.7485 18 6 -1.4503 -10.2012 -3.8678 19 6 -0.4895 -11.3269 -3.4729 20 6 0.0290 -11.0710 -2.0553 21 8 0.6672 -9.7934 -2.0065 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6248 -2.5524 0.9029 24 1 0.6241 -2.5613 -0.8770 25 1 2.8721 -3.6088 -0.8720 26 1 2.8721 -3.5996 0.9080 27 1 0.7577 -5.1624 0.7930 28 1 2.4619 -5.6692 -1.6666 29 1 1.6298 -7.9653 -0.5359 30 1 0.1117 -7.0877 -0.2307 31 1 -1.4151 -8.0476 -3.9743 32 1 0.1112 -8.8315 -4.4499 33 1 -2.3136 -10.2084 -3.2024 34 1 -1.7812 -10.3465 -4.8961 35 1 -1.0152 -12.2814 -3.5016 36 1 0.3486 -11.3516 -4.1693 37 1 -0.8058 -11.0874 -1.3545 38 1 0.7460 -11.8461 -1.7851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034520579.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:03 Heat of formation + Delta-G solvation = -129.677178 kcal Electronic energy + Delta-G solvation = -16567.425662 eV Core-core repulsion = 13794.288429 eV Total energy + Delta-G solvation = -2773.137234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.71166 -38.41095 -37.01107 -35.11331 -34.71044 -32.28309 -31.05503 -27.90099 -25.90805 -25.09673 -24.24484 -22.89594 -21.38156 -20.59615 -18.89540 -18.38691 -17.78202 -17.03781 -16.21832 -15.79638 -15.65497 -15.56668 -15.23984 -14.94484 -14.70333 -14.20718 -13.83767 -13.75056 -13.50005 -13.28644 -12.71528 -12.49456 -12.29235 -12.21213 -12.03472 -11.94402 -11.89750 -11.72797 -11.57185 -11.05354 -10.70973 -10.56112 -10.53147 -9.95417 -8.71309 -6.41795 1.09811 1.51982 1.61907 1.79892 2.37642 2.56459 2.93011 3.14169 3.73383 3.75756 3.85218 3.96665 3.99331 4.04738 4.14205 4.30328 4.40305 4.43182 4.53320 4.59860 4.63962 4.71631 4.75930 4.81739 4.95442 4.98295 5.05633 5.07344 5.30479 5.32868 5.37175 5.58673 5.79975 5.97506 6.01655 6.16915 6.22933 6.55254 7.40938 8.69672 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.056911 B = 0.003162 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.880436 B = 8854.274553 C = 9118.191075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.042 4.042 3 Si 1.123 2.877 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.622 4.622 8 H 0.052 0.948 9 C 0.013 3.987 10 C -0.071 4.071 11 C -0.131 4.131 12 C -0.172 4.172 13 C 0.103 3.897 14 O -0.387 6.387 15 C 0.248 3.752 16 H 0.063 0.937 17 C -0.142 4.142 18 C -0.117 4.117 19 C -0.156 4.156 20 C 0.061 3.939 21 O -0.430 6.430 22 H 0.255 0.745 23 H -0.007 1.007 24 H -0.015 1.015 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -24.556 -5.262 25.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.239 4.239 3 Si 0.943 3.057 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.207 1.207 7 C -0.660 4.660 8 H 0.071 0.929 9 C -0.024 4.024 10 C -0.109 4.109 11 C -0.149 4.149 12 C -0.190 4.190 13 C 0.028 3.972 14 O -0.307 6.307 15 C 0.153 3.847 16 H 0.080 0.920 17 C -0.180 4.180 18 C -0.154 4.154 19 C -0.194 4.194 20 C -0.014 4.014 21 O -0.353 6.353 22 H 0.064 0.936 23 H 0.011 0.989 24 H 0.004 0.996 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.133 0.867 28 H 0.127 0.873 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.029 -22.795 -5.374 23.507 hybrid contribution -0.222 -1.674 0.155 1.696 sum -2.251 -24.469 -5.219 25.120 Atomic orbital electron populations 1.70887 1.07977 1.29863 1.48827 1.27550 0.96647 1.07067 0.92595 0.82875 0.74115 0.70727 0.77952 1.19496 1.19366 1.20706 1.22561 0.94829 0.93445 1.55184 0.92930 1.19115 0.95008 0.94067 0.94185 1.20527 0.97444 0.91628 1.01253 1.22979 0.99040 0.93878 0.98999 1.22570 1.01442 0.95179 0.99848 1.21395 0.97461 0.94790 0.83575 1.88046 1.75272 1.37226 1.30186 1.23179 0.87358 0.77151 0.97019 0.92002 1.22065 1.01130 1.00079 0.94691 1.21616 0.98053 0.92009 1.03714 1.22238 1.00010 1.00083 0.97061 1.22801 0.98527 0.83106 0.97003 1.87782 1.40407 1.16467 1.90604 0.93558 0.98888 0.99637 0.92712 0.91472 0.86699 0.87348 0.90944 0.91993 0.90022 0.91343 0.90483 0.89311 0.88066 0.91520 0.91861 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.09 13.65 21.45 0.29 -59.80 16 2 C -0.04 -2.50 5.46 84.65 0.46 -2.04 16 3 Si 1.12 51.57 29.90 68.60 2.05 53.62 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.62 -37.10 9.11 25.60 0.23 -36.86 16 8 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.01 0.73 4.27 29.85 0.13 0.86 16 10 C -0.07 -3.13 5.60 29.85 0.17 -2.96 16 11 C -0.13 -4.81 9.11 25.64 0.23 -4.58 16 12 C -0.17 -5.81 9.50 25.65 0.24 -5.56 16 13 C 0.10 3.00 6.22 71.24 0.44 3.44 16 14 O -0.39 -11.96 10.25 -126.21 -1.29 -13.26 16 15 C 0.25 5.89 3.20 72.01 0.23 6.12 16 16 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 17 C -0.14 -2.75 5.79 30.68 0.18 -2.57 16 18 C -0.12 -1.46 6.03 30.71 0.19 -1.27 16 19 C -0.16 -1.78 6.14 30.69 0.19 -1.60 16 20 C 0.06 0.88 6.84 72.01 0.49 1.37 16 21 O -0.43 -10.08 10.03 -126.21 -1.27 -11.35 16 22 H 0.26 16.56 7.22 -92.70 -0.67 15.89 16 23 H -0.01 -0.41 8.01 -2.38 -0.02 -0.43 16 24 H -0.01 -0.87 8.00 -2.39 -0.02 -0.88 16 25 H 0.05 2.39 7.79 -2.39 -0.02 2.37 16 26 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.12 3.90 7.90 -2.91 -0.02 3.88 16 28 H 0.11 3.75 7.84 -2.92 -0.02 3.72 16 29 H 0.07 1.97 7.74 -2.39 -0.02 1.95 16 30 H 0.06 1.64 7.86 -2.39 -0.02 1.62 16 31 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.72 313.94 4.06 -66.66 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.09 Total: 9.78 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 3.18 Total: -45.65 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.29 Total: -59.80 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -2.56 Total: -24.61 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -70.72 4.06 -66.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034520579.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.019 kcal (2) G-P(sol) polarization free energy of solvation -70.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds