Wall clock time and date at job start Sun Mar 29 2020 22:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99535 * 2 1 4 4 H 1.48501 * 109.46642 * 240.00146 * 3 2 1 5 5 H 1.48492 * 109.47504 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47016 * 120.00454 * 3 2 1 7 7 C 1.37876 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99701 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00123 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.46906 * 180.02562 * 10 9 7 12 12 C 1.31000 * 119.99862 * 126.19228 * 11 10 9 13 13 C 1.50704 * 119.99988 * 6.97047 * 12 11 10 14 14 O 1.42901 * 109.47377 * 136.14789 * 13 12 11 15 15 C 1.42898 * 114.00125 * 179.97438 * 14 13 12 16 16 H 1.09001 * 109.48196 * 309.97494 * 15 14 13 17 17 C 1.53088 * 109.48013 * 189.93951 * 15 14 13 18 18 C 1.53192 * 109.21568 * 182.44198 * 17 15 14 19 19 C 1.53178 * 109.02831 * 56.88850 * 18 17 15 20 20 C 1.53099 * 109.21618 * 303.11404 * 19 18 17 21 21 O 1.42901 * 109.41194 * 57.57811 * 20 19 18 22 22 H 0.97000 * 120.00290 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46911 * 60.00379 * 9 7 2 24 24 H 1.09003 * 109.47391 * 300.00763 * 9 7 2 25 25 H 1.08999 * 109.47029 * 60.00296 * 10 9 7 26 26 H 1.09005 * 109.47088 * 300.00209 * 10 9 7 27 27 H 1.07999 * 120.00060 * 306.18915 * 11 10 9 28 28 H 1.07996 * 120.00232 * 186.96552 * 12 11 10 29 29 H 1.08994 * 109.47426 * 16.14500 * 13 12 11 30 30 H 1.09004 * 109.46932 * 256.14086 * 13 12 11 31 31 H 1.09003 * 109.52428 * 302.31293 * 17 15 14 32 32 H 1.08999 * 109.52498 * 62.50116 * 17 15 14 33 33 H 1.08999 * 109.49299 * 297.05514 * 18 17 15 34 34 H 1.08998 * 109.59622 * 176.78457 * 18 17 15 35 35 H 1.09004 * 109.52248 * 183.18201 * 19 18 17 36 36 H 1.09000 * 109.52731 * 63.05334 * 19 18 17 37 37 H 1.08995 * 109.48582 * 177.56506 * 20 19 18 38 38 H 1.09003 * 109.47902 * 297.58600 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 6 1.7448 -5.8690 -0.9169 13 6 2.8934 -5.6712 -1.8724 14 8 3.6149 -6.8970 -2.0101 15 6 4.7303 -6.8180 -2.8999 16 1 4.4136 -6.3680 -3.8408 17 6 5.2733 -8.2248 -3.1639 18 6 6.5054 -8.1280 -4.0691 19 6 7.5431 -7.2182 -3.4045 20 6 6.9124 -5.8502 -3.1312 21 8 5.7553 -6.0164 -2.3093 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 2.8720 -3.6043 0.8895 26 1 2.8721 -3.6043 -0.8905 27 1 0.7433 -5.1588 0.7534 28 1 1.1304 -6.7544 -0.9872 29 1 3.5589 -4.8994 -1.4857 30 1 2.5083 -5.3651 -2.8451 31 1 5.5525 -8.6908 -2.2189 32 1 4.5071 -8.8250 -3.6546 33 1 6.2167 -7.7086 -5.0329 34 1 6.9309 -9.1209 -4.2148 35 1 8.4001 -7.0982 -4.0674 36 1 7.8692 -7.6633 -2.4645 37 1 7.6335 -5.2131 -2.6192 38 1 6.6246 -5.3874 -4.0752 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039118476.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:04 Heat of formation + Delta-G solvation = -118.081488 kcal Electronic energy + Delta-G solvation = -16965.031233 eV Core-core repulsion = 14192.396826 eV Total energy + Delta-G solvation = -2772.634407 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67026 -38.52129 -36.82897 -34.89487 -34.66721 -32.08068 -31.07758 -27.76921 -26.34349 -25.35659 -24.20882 -23.11991 -21.31971 -19.51325 -18.51872 -18.34160 -17.84552 -16.99747 -16.51958 -16.02068 -15.80447 -15.36406 -15.04092 -14.98257 -14.43009 -14.14301 -13.77334 -13.67406 -13.54941 -13.23070 -12.89917 -12.60690 -12.41707 -12.20284 -12.12085 -11.90012 -11.64913 -11.59101 -11.36933 -11.11205 -10.87316 -10.56086 -10.48077 -9.85071 -8.20474 -6.32343 1.18402 1.39783 1.43179 1.51340 2.39140 2.41620 3.03062 3.12245 3.76831 3.83159 3.91326 3.98678 4.02090 4.12927 4.23672 4.35868 4.42828 4.45389 4.61410 4.65113 4.78962 4.80598 4.84471 4.98324 5.03227 5.08099 5.10654 5.11386 5.33515 5.48339 5.61142 5.66872 5.82987 5.90447 6.03472 6.24076 6.30335 6.83769 7.36899 8.91244 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.028570 B = 0.004361 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.826242 B = 6418.632178 C = 7217.686382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.088 4.088 11 C -0.132 4.132 12 C -0.174 4.174 13 C 0.090 3.910 14 O -0.378 6.378 15 C 0.244 3.756 16 H 0.059 0.941 17 C -0.136 4.136 18 C -0.116 4.116 19 C -0.155 4.155 20 C 0.059 3.941 21 O -0.435 6.435 22 H 0.265 0.735 23 H -0.008 1.008 24 H -0.006 1.006 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.131 0.869 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.631 -16.189 -9.541 23.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.125 4.125 11 C -0.150 4.150 12 C -0.192 4.192 13 C 0.014 3.986 14 O -0.298 6.298 15 C 0.149 3.851 16 H 0.077 0.923 17 C -0.174 4.174 18 C -0.154 4.154 19 C -0.193 4.193 20 C -0.017 4.017 21 O -0.357 6.357 22 H 0.073 0.927 23 H 0.010 0.990 24 H 0.013 0.987 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.408 -16.171 -9.270 22.961 hybrid contribution -0.066 1.153 -0.067 1.157 sum 13.343 -15.018 -9.337 22.153 Atomic orbital electron populations 1.70094 1.07820 1.27928 1.51486 1.25992 0.95790 1.03376 0.94564 0.85485 0.78292 0.77958 0.79235 1.19125 1.20615 1.19142 1.21681 0.93544 0.92407 1.50923 0.92272 1.18907 0.94148 0.92375 0.94998 1.20810 0.98005 0.92489 1.01241 1.23058 0.99807 0.94732 0.97372 1.22502 0.98479 1.00872 0.97309 1.21549 0.92254 0.86267 0.98503 1.87955 1.40289 1.33235 1.68315 1.23245 0.80256 0.92905 0.88734 0.92330 1.22044 0.99407 0.94327 1.01627 1.21626 0.93857 1.01708 0.98167 1.22231 0.99443 0.95422 1.02191 1.22787 0.85909 0.97888 0.95074 1.87823 1.28955 1.71991 1.46962 0.92671 0.98953 0.98711 0.92329 0.91948 0.86201 0.85135 0.92360 0.92100 0.91220 0.89107 0.90530 0.88846 0.88164 0.91460 0.87999 0.92159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -32.22 9.11 25.60 0.23 -31.99 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.80 4.95 29.85 0.15 1.95 16 10 C -0.09 -3.93 5.21 29.85 0.16 -3.78 16 11 C -0.13 -4.95 9.51 25.65 0.24 -4.70 16 12 C -0.17 -5.82 9.89 25.65 0.25 -5.57 16 13 C 0.09 2.98 5.68 71.24 0.40 3.38 16 14 O -0.38 -11.92 10.24 -126.21 -1.29 -13.21 16 15 C 0.24 6.28 3.17 72.01 0.23 6.51 16 16 H 0.06 1.38 8.09 -2.39 -0.02 1.36 16 17 C -0.14 -2.57 5.78 30.69 0.18 -2.39 16 18 C -0.12 -1.51 6.03 30.72 0.19 -1.32 16 19 C -0.16 -2.15 6.13 30.69 0.19 -1.96 16 20 C 0.06 1.13 6.84 72.02 0.49 1.62 16 21 O -0.43 -12.40 10.24 -126.21 -1.29 -13.69 16 22 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 23 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 24 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 25 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.06 2.73 5.41 -2.38 -0.01 2.71 16 27 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 28 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.06 2.15 5.39 -2.39 -0.01 2.14 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -68.60 311.16 3.90 -64.70 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.00 Total: 10.54 kcal Atomic # 6 Polarization: -40.92 SS G_CDS: 3.17 Total: -37.75 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: 0.28 Total: -57.56 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -2.59 Total: -26.91 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -68.60 3.90 -64.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039118476.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.379 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds