Wall clock time and date at job start Sun Mar 29 2020 22:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00116 * 2 1 4 4 H 1.48499 * 109.47309 * 240.00265 * 3 2 1 5 5 H 1.48501 * 109.47132 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47579 * 120.00146 * 3 2 1 7 7 C 1.37880 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00313 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99877 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46975 * 180.02562 * 10 9 7 12 12 C 1.31001 * 119.99932 * 126.19842 * 11 10 9 13 13 C 1.50700 * 120.00065 * 6.96459 * 12 11 10 14 14 O 1.42902 * 109.47088 * 136.15011 * 13 12 11 15 15 C 1.42895 * 113.99740 * 180.02562 * 14 13 12 16 16 H 1.08994 * 109.49363 * 54.97282 * 15 14 13 17 17 C 1.53098 * 109.47927 * 175.00271 * 15 14 13 18 18 C 1.53174 * 109.16372 * 177.59060 * 17 15 14 19 19 C 1.53177 * 109.03802 * 303.01704 * 18 17 15 20 20 C 1.53087 * 109.16083 * 56.98196 * 19 18 17 21 21 O 1.42906 * 109.41777 * 302.38864 * 20 19 18 22 22 H 0.96995 * 120.00098 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46503 * 60.00529 * 9 7 2 24 24 H 1.08998 * 109.47722 * 300.00342 * 9 7 2 25 25 H 1.09005 * 109.47090 * 60.00523 * 10 9 7 26 26 H 1.08999 * 109.47850 * 300.00247 * 10 9 7 27 27 H 1.07996 * 120.00153 * 306.19017 * 11 10 9 28 28 H 1.08005 * 119.99866 * 186.97284 * 12 11 10 29 29 H 1.09004 * 109.47032 * 16.15484 * 13 12 11 30 30 H 1.09002 * 109.47481 * 256.15203 * 13 12 11 31 31 H 1.08999 * 109.52369 * 57.67850 * 17 15 14 32 32 H 1.09002 * 109.52117 * 297.49952 * 17 15 14 33 33 H 1.09003 * 109.54375 * 62.88614 * 18 17 15 34 34 H 1.09004 * 109.54133 * 183.06322 * 18 17 15 35 35 H 1.08996 * 109.52421 * 176.88990 * 19 18 17 36 36 H 1.09000 * 109.51931 * 297.01193 * 19 18 17 37 37 H 1.08995 * 109.48280 * 62.37694 * 20 19 18 38 38 H 1.09008 * 109.48017 * 182.41244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4918 -4.9672 -0.0025 12 6 1.7442 -5.8687 -0.9188 13 6 2.8920 -5.6705 -1.8749 14 8 3.6134 -6.8962 -2.0137 15 6 4.7288 -6.8165 -2.9034 16 1 5.3885 -6.0082 -2.5882 17 6 5.4965 -8.1409 -2.8796 18 6 6.6543 -8.0690 -3.8798 19 6 6.0953 -7.7461 -5.2689 20 6 5.3046 -6.4371 -5.2005 21 8 4.2628 -6.5615 -4.2301 22 1 -0.4850 0.8400 0.0004 23 1 0.6242 -2.5566 -0.8904 24 1 0.6247 -2.5572 0.8896 25 1 2.8727 -3.6047 0.8878 26 1 2.8714 -3.6040 -0.8922 27 1 0.7439 -5.1592 0.7525 28 1 1.1295 -6.7540 -0.9890 29 1 3.5578 -4.8988 -1.4884 30 1 2.5062 -5.3639 -2.8472 31 1 4.8266 -8.9553 -3.1557 32 1 5.8903 -8.3156 -1.8784 33 1 7.3505 -7.2871 -3.5761 34 1 7.1722 -9.0277 -3.9076 35 1 6.9174 -7.6385 -5.9764 36 1 5.4385 -8.5530 -5.5937 37 1 5.9718 -5.6238 -4.9153 38 1 4.8684 -6.2244 -6.1766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039118477.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:06 Heat of formation + Delta-G solvation = -100.225101 kcal Electronic energy + Delta-G solvation = -16900.102587 eV Core-core repulsion = 14128.242492 eV Total energy + Delta-G solvation = -2771.860096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.73907 -37.29951 -35.25816 -33.89299 -32.86019 -30.73014 -29.67136 -26.22609 -24.83152 -24.20586 -23.32887 -21.16625 -20.54386 -18.00548 -17.43980 -16.77552 -16.21490 -15.86334 -15.13077 -14.87054 -14.45635 -14.37787 -13.89819 -13.51063 -12.97152 -12.88283 -12.62347 -12.51186 -11.89414 -11.54812 -11.43052 -11.34436 -11.15245 -10.97688 -10.76663 -10.64909 -10.42478 -9.94424 -9.75438 -9.59352 -9.34980 -9.06003 -8.39018 -8.27087 -5.98603 -4.01453 2.60119 3.33896 3.38235 3.40484 3.43828 3.96606 4.46933 4.52324 4.55589 4.67588 4.84237 4.89597 5.17304 5.28809 5.36817 5.40489 5.45541 5.51601 5.58740 5.64822 5.70624 5.76842 5.89820 5.95142 6.00771 6.17182 6.49883 6.65795 6.91539 7.02092 7.20895 7.27472 7.40888 7.68816 7.84640 8.01597 8.43037 9.05310 9.62388 11.12693 Molecular weight = 240.15amu Principal moments of inertia in cm(-1) A = 0.029400 B = 0.004122 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.163917 B = 6790.748209 C = 7378.852536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.028 3.972 10 C -0.101 4.101 11 C -0.113 4.113 12 C -0.193 4.193 13 C 0.090 3.910 14 O -0.366 6.366 15 C 0.255 3.745 16 H 0.053 0.947 17 C -0.140 4.140 18 C -0.120 4.120 19 C -0.160 4.160 20 C 0.071 3.929 21 O -0.405 6.405 22 H 0.261 0.739 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.124 -15.615 -8.383 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.138 4.138 11 C -0.131 4.131 12 C -0.211 4.211 13 C 0.016 3.984 14 O -0.285 6.285 15 C 0.159 3.841 16 H 0.070 0.930 17 C -0.178 4.178 18 C -0.158 4.158 19 C -0.197 4.197 20 C -0.006 4.006 21 O -0.326 6.326 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.718 -15.639 -8.317 21.238 hybrid contribution 0.619 1.119 -0.076 1.281 sum 12.337 -14.520 -8.394 20.820 Atomic orbital electron populations 1.69954 1.06065 1.26724 1.50700 1.25024 0.94847 0.99230 0.95311 0.86654 0.79583 0.83135 0.78598 1.20253 1.21263 1.20234 1.21229 0.92987 0.91080 1.50804 0.92739 1.19033 0.93824 0.90639 0.97438 1.21062 0.99074 0.92680 1.00996 1.23191 0.98854 0.95349 0.95693 1.22262 0.99134 1.01044 0.98622 1.21623 0.92717 0.85296 0.98813 1.87996 1.44263 1.35671 1.60587 1.22912 0.86498 0.96026 0.78673 0.92999 1.22012 0.97325 0.97730 1.00720 1.21591 0.97261 1.02531 0.94421 1.22245 1.00547 0.99247 0.97682 1.22498 0.89723 0.96057 0.92336 1.87842 1.34133 1.92294 1.18322 0.92921 0.96449 0.96425 0.92189 0.92240 0.87290 0.87427 0.91564 0.91951 0.90203 0.90075 0.91535 0.90832 0.90625 0.90816 0.92988 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.73 4.95 -27.88 -0.14 0.59 16 10 C -0.10 -2.16 5.21 -27.88 -0.15 -2.30 16 11 C -0.11 -2.09 9.51 -36.02 -0.34 -2.44 16 12 C -0.19 -3.33 9.89 -36.03 -0.36 -3.68 16 13 C 0.09 1.53 5.67 36.01 0.20 1.74 16 14 O -0.37 -5.90 10.25 -59.04 -0.61 -6.50 16 15 C 0.25 3.40 3.20 37.21 0.12 3.51 16 16 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 17 C -0.14 -1.44 5.79 -26.59 -0.15 -1.60 16 18 C -0.12 -0.95 6.03 -26.55 -0.16 -1.11 16 19 C -0.16 -1.24 6.14 -26.59 -0.16 -1.40 16 20 C 0.07 0.69 6.84 37.20 0.25 0.94 16 21 O -0.40 -5.61 10.03 -59.04 -0.59 -6.20 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 26 H 0.06 1.24 5.41 -51.93 -0.28 0.96 16 27 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 28 H 0.11 1.72 8.06 -52.48 -0.42 1.29 16 29 H 0.07 1.13 5.64 -51.93 -0.29 0.84 16 30 H 0.06 1.09 7.75 -51.93 -0.40 0.68 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 LS Contribution 310.89 15.07 4.69 4.69 Total: -1.00 -31.50 310.89 -8.53 -40.03 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.44 Total: -2.75 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -1.29 Total: -19.51 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.74 Total: -26.52 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: -1.20 Total: -12.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.50 -8.53 -40.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039118477.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.200 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds