Wall clock time and date at job start Sun Mar 29 2020 22:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 C 1.52997 * 109.57677 * 182.41245 * 14 13 12 16 16 C 1.50704 * 109.46970 * 294.71143 * 15 14 13 17 17 N 1.34776 * 119.99948 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99761 * 359.97438 * 16 15 14 19 19 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 20 20 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 27 27 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 28 28 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 29 29 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 30 30 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 31 31 H 1.09004 * 109.47282 * 54.71039 * 15 14 13 32 32 H 1.09000 * 109.47154 * 174.71313 * 15 14 13 33 33 H 0.96994 * 120.00509 * 359.97438 * 17 16 15 34 34 H 0.97004 * 119.99693 * 180.02562 * 17 16 15 35 35 H 1.09005 * 109.50073 * 297.71107 * 19 14 13 36 36 H 1.08991 * 109.50379 * 177.59621 * 19 14 13 37 37 H 1.08989 * 109.46428 * 305.85572 * 20 11 10 38 38 H 1.09002 * 109.45912 * 65.83533 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7605 -5.1093 1.2489 13 6 -0.1037 -6.3687 1.1546 14 6 0.7964 -7.5818 0.9037 15 6 -0.0656 -8.8363 0.7483 16 6 -0.7644 -9.1301 2.0509 17 7 -1.5825 -10.1964 2.1511 18 8 -0.5896 -8.4075 3.0092 19 6 1.6025 -7.3529 -0.3779 20 6 2.4172 -6.0650 -0.2392 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 1.4582 -5.2089 2.0805 27 1 0.1214 -4.2418 1.4133 28 1 -0.8110 -6.2639 0.3319 29 1 -0.6487 -6.5069 2.0884 30 1 1.4778 -7.7099 1.7446 31 1 -0.8077 -8.6728 -0.0332 32 1 0.5677 -9.6810 0.4771 33 1 -1.7220 -10.7745 1.3848 34 1 -2.0326 -10.3853 2.9894 35 1 0.9220 -7.2637 -1.2248 36 1 2.2764 -8.1942 -0.5390 37 1 2.9813 -5.8916 -1.1555 38 1 3.1070 -6.1603 0.5994 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042251032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:48 Heat of formation + Delta-G solvation = -61.741806 kcal Electronic energy + Delta-G solvation = -17364.930847 eV Core-core repulsion = 14627.032263 eV Total energy + Delta-G solvation = -2737.898584 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.94933 -38.29084 -34.66573 -33.83931 -32.76496 -30.53937 -29.96333 -27.74716 -24.42579 -22.87126 -22.46012 -20.49771 -19.95522 -19.35709 -17.46795 -16.78350 -16.35101 -15.43438 -14.98086 -14.56468 -14.38439 -14.31296 -13.73488 -13.61467 -12.92866 -12.60198 -12.44766 -12.04142 -11.81372 -11.57473 -11.07776 -10.91227 -10.83951 -10.58382 -10.44484 -10.39839 -10.11626 -9.91030 -9.74108 -9.59596 -9.22528 -9.02467 -8.27009 -7.57370 -5.93799 -3.95795 2.53055 3.35082 3.37400 3.42188 3.46452 4.45739 4.62873 4.69404 4.82544 4.90865 5.18974 5.41782 5.43384 5.47096 5.58737 5.73051 5.79997 5.92958 6.07552 6.12609 6.22873 6.25822 6.39126 6.46903 6.55682 6.62467 6.68648 6.75294 7.07130 7.13239 7.63354 7.72230 7.90060 7.99994 8.13226 8.16762 8.50905 9.11883 9.67469 11.17680 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046695 B = 0.004309 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.498141 B = 6496.736725 C = 6866.846612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.027 3.973 10 C 0.063 3.937 11 N -0.539 5.539 12 C 0.057 3.943 13 C -0.114 4.114 14 C -0.073 4.073 15 C -0.137 4.137 16 C 0.514 3.486 17 N -0.863 5.863 18 O -0.534 6.534 19 C -0.109 4.109 20 C 0.055 3.945 21 H 0.259 0.741 22 H 0.024 0.976 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.018 0.982 26 H 0.024 0.976 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.399 0.601 34 H 0.398 0.602 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 -21.559 0.332 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.010 4.010 10 C -0.064 4.064 11 N -0.264 5.264 12 C -0.071 4.071 13 C -0.151 4.151 14 C -0.092 4.092 15 C -0.177 4.177 16 C 0.299 3.701 17 N -0.426 5.426 18 O -0.410 6.410 19 C -0.147 4.147 20 C -0.073 4.073 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.036 0.964 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.227 0.773 34 H 0.228 0.772 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.445 -20.836 0.455 20.891 hybrid contribution 0.729 0.484 0.606 1.065 sum -0.716 -20.351 1.061 20.391 Atomic orbital electron populations 1.69984 1.06004 1.26376 1.50906 1.24994 0.94823 0.99142 0.95407 0.86552 0.80090 0.83902 0.77531 1.19800 1.21025 1.21064 1.21252 0.93007 0.91126 1.50511 0.92794 1.19107 0.94019 0.90118 0.97779 1.22307 0.96713 0.88599 0.98753 1.62046 1.27239 1.02239 1.34838 1.22066 0.96776 0.98367 0.89898 1.21754 0.97810 0.93147 1.02433 1.20986 0.96799 0.93146 0.98291 1.21771 1.00277 1.00477 0.95155 1.20872 0.78583 0.79807 0.90794 1.43967 1.50306 1.30675 1.17696 1.90750 1.62674 1.47660 1.39932 1.21637 0.98710 0.96759 0.97616 1.22013 0.94059 0.91196 1.00061 0.93111 0.95749 0.96438 0.92258 0.96406 0.95783 0.89693 0.91830 0.90352 0.90949 0.88657 0.89090 0.77260 0.77155 0.91085 0.92216 0.91207 0.95791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.73 4.90 -27.88 -0.14 0.60 16 10 C 0.06 1.41 4.90 -3.82 -0.02 1.39 16 11 N -0.54 -10.39 4.66 -234.67 -1.09 -11.48 16 12 C 0.06 1.07 5.29 -3.84 -0.02 1.05 16 13 C -0.11 -1.78 5.09 -26.65 -0.14 -1.91 16 14 C -0.07 -0.93 1.90 -90.49 -0.17 -1.10 16 15 C -0.14 -1.24 5.18 -27.88 -0.14 -1.39 16 16 C 0.51 5.50 7.84 -10.98 -0.09 5.41 16 17 N -0.86 -5.56 8.87 31.22 0.28 -5.28 16 18 O -0.53 -8.28 14.83 5.55 0.08 -8.19 16 19 C -0.11 -1.34 5.38 -26.65 -0.14 -1.48 16 20 C 0.06 0.86 5.46 -3.83 -0.02 0.84 16 21 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 22 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.02 0.50 6.43 -51.93 -0.33 0.16 16 24 H 0.06 1.29 7.99 -51.93 -0.41 0.88 16 25 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.79 6.21 -51.93 -0.32 1.47 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.30 6.04 -51.93 -0.31 0.98 16 30 H 0.07 1.02 7.95 -51.93 -0.41 0.61 16 31 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 1.27 8.83 -40.82 -0.36 0.91 16 34 H 0.40 2.32 8.93 -40.82 -0.36 1.96 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.04 8.01 -51.94 -0.42 0.62 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 302.71 15.07 4.56 4.56 Total: -1.00 -34.10 302.71 -8.03 -42.13 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.28 Total: -1.57 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.29 Total: -10.51 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.08 Total: -43.53 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.19 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.10 -8.03 -42.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042251032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.610 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds