Wall clock time and date at job start Sun Mar 29 2020 22:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47510 * 300.00508 * 3 2 1 6 6 H 1.48506 * 109.47246 * 60.00543 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.46846 * 111.00018 * 294.20961 * 11 10 9 13 13 C 1.53033 * 109.52460 * 174.16134 * 12 11 10 14 14 C 1.53124 * 109.27811 * 59.18358 * 13 12 11 15 15 C 1.52997 * 109.57677 * 182.41245 * 14 13 12 16 16 C 1.50704 * 109.46970 * 294.71143 * 15 14 13 17 17 N 1.34776 * 119.99948 * 180.02562 * 16 15 14 18 18 O 1.21287 * 119.99761 * 359.97438 * 16 15 14 19 19 C 1.53125 * 109.15751 * 302.34732 * 14 13 12 20 20 C 1.46851 * 110.99682 * 170.00115 * 11 10 9 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.09002 * 109.46555 * 294.18280 * 12 11 10 27 27 H 1.09001 * 109.46296 * 54.14881 * 12 11 10 28 28 H 1.08997 * 109.50475 * 299.23909 * 13 12 11 29 29 H 1.09002 * 109.50799 * 179.12007 * 13 12 11 30 30 H 1.08994 * 109.52258 * 62.24925 * 14 13 12 31 31 H 1.09004 * 109.47282 * 54.71039 * 15 14 13 32 32 H 1.09000 * 109.47154 * 174.71313 * 15 14 13 33 33 H 0.96994 * 120.00509 * 359.97438 * 17 16 15 34 34 H 0.97004 * 119.99693 * 180.02562 * 17 16 15 35 35 H 1.09005 * 109.50073 * 297.71107 * 19 14 13 36 36 H 1.08991 * 109.50379 * 177.59621 * 19 14 13 37 37 H 1.08989 * 109.46428 * 305.85572 * 20 11 10 38 38 H 1.09002 * 109.45912 * 65.83533 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 0.7605 -5.1093 1.2489 13 6 -0.1037 -6.3687 1.1546 14 6 0.7964 -7.5818 0.9037 15 6 -0.0656 -8.8363 0.7483 16 6 -0.7644 -9.1301 2.0509 17 7 -1.5825 -10.1964 2.1511 18 8 -0.5896 -8.4075 3.0092 19 6 1.6025 -7.3529 -0.3779 20 6 2.4172 -6.0650 -0.2392 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 1.4582 -5.2089 2.0805 27 1 0.1214 -4.2418 1.4133 28 1 -0.8110 -6.2639 0.3319 29 1 -0.6487 -6.5069 2.0884 30 1 1.4778 -7.7099 1.7446 31 1 -0.8077 -8.6728 -0.0332 32 1 0.5677 -9.6810 0.4771 33 1 -1.7220 -10.7745 1.3848 34 1 -2.0326 -10.3853 2.9894 35 1 0.9220 -7.2637 -1.2248 36 1 2.2764 -8.1942 -0.5390 37 1 2.9813 -5.8916 -1.1555 38 1 3.1070 -6.1603 0.5994 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042251032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:47 Heat of formation + Delta-G solvation = -88.264925 kcal Electronic energy + Delta-G solvation = -17366.080976 eV Core-core repulsion = 14627.032263 eV Total energy + Delta-G solvation = -2739.048712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90209 -39.55896 -36.20287 -34.76240 -34.55687 -31.95411 -31.54922 -29.14411 -26.28849 -24.27803 -23.82647 -21.89632 -21.21388 -20.55718 -18.61091 -18.13260 -17.54016 -16.57098 -16.54087 -16.30859 -15.89938 -15.33188 -15.16933 -14.79803 -14.48072 -14.22113 -13.82115 -13.63915 -13.17260 -12.94568 -12.77346 -12.66859 -12.40215 -12.09066 -11.90460 -11.69760 -11.52125 -11.45539 -11.22264 -10.97624 -10.71895 -10.53851 -10.51080 -9.16184 -8.20502 -6.32327 1.39269 1.40259 1.53689 1.75263 2.39943 2.72731 3.11417 3.12589 3.78515 3.88075 3.96265 4.20570 4.30834 4.36485 4.47480 4.56445 4.63646 4.68899 4.74721 4.80940 4.91305 5.00294 5.05977 5.08485 5.19330 5.25985 5.32270 5.45192 5.55565 5.67207 5.78907 5.99116 6.11267 6.34341 6.38929 6.57087 6.84920 7.36756 7.46897 8.92074 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.046695 B = 0.004309 C = 0.004077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.498141 B = 6496.736725 C = 6866.846612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.078 3.922 11 N -0.546 5.546 12 C 0.059 3.941 13 C -0.105 4.105 14 C -0.070 4.070 15 C -0.128 4.128 16 C 0.507 3.493 17 N -0.841 5.841 18 O -0.593 6.593 19 C -0.100 4.100 20 C 0.048 3.952 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.011 1.011 24 H 0.068 0.932 25 H 0.012 0.988 26 H 0.015 0.985 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.419 0.581 34 H 0.403 0.597 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -23.362 -0.853 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.001 4.001 10 C -0.050 4.050 11 N -0.271 5.271 12 C -0.069 4.069 13 C -0.142 4.142 14 C -0.089 4.089 15 C -0.168 4.168 16 C 0.294 3.706 17 N -0.405 5.405 18 O -0.474 6.474 19 C -0.137 4.137 20 C -0.079 4.079 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.007 0.993 24 H 0.086 0.914 25 H 0.031 0.969 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.250 0.750 34 H 0.234 0.766 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.475 -22.711 -0.761 22.729 hybrid contribution 0.364 0.992 0.988 1.447 sum -0.110 -21.719 0.227 21.721 Atomic orbital electron populations 1.70125 1.07893 1.27740 1.51475 1.26003 0.95785 1.03451 0.94567 0.85340 0.79010 0.78460 0.77854 1.18520 1.20068 1.20400 1.21663 0.93517 0.92300 1.50883 0.92189 1.18928 0.94226 0.92096 0.94888 1.21975 0.95376 0.88816 0.98815 1.62001 1.27969 1.02369 1.34746 1.21995 0.96503 0.98734 0.89657 1.21652 0.97701 0.93047 1.01828 1.20904 0.96547 0.93350 0.98089 1.21734 1.00642 0.99693 0.94704 1.21233 0.78769 0.79934 0.90683 1.43787 1.48530 1.29468 1.18720 1.90740 1.64891 1.49889 1.41881 1.21622 0.98943 0.95951 0.97218 1.22225 0.94113 0.91179 1.00409 0.92737 0.98776 0.99258 0.91384 0.96942 0.96696 0.93460 0.91784 0.91611 0.92498 0.86614 0.85307 0.74999 0.76638 0.90488 0.88377 0.90140 0.95879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.93 13.29 21.45 0.28 -58.65 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.55 -32.59 9.11 25.60 0.23 -32.35 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.04 2.05 4.90 29.85 0.15 2.20 16 10 C 0.08 3.56 4.90 86.31 0.42 3.99 16 11 N -0.55 -21.39 4.66 -896.37 -4.17 -25.56 16 12 C 0.06 2.35 5.29 86.32 0.46 2.80 16 13 C -0.10 -3.32 5.09 30.65 0.16 -3.16 16 14 C -0.07 -1.65 1.90 -10.71 -0.02 -1.67 16 15 C -0.13 -1.89 5.18 29.85 0.15 -1.73 16 16 C 0.51 9.93 7.84 87.66 0.69 10.61 16 17 N -0.84 -8.69 8.87 -173.53 -1.54 -10.23 16 18 O -0.59 -18.44 14.83 -3.05 -0.05 -18.49 16 19 C -0.10 -2.13 5.38 30.65 0.16 -1.96 16 20 C 0.05 1.42 5.46 86.32 0.47 1.90 16 21 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 22 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 23 H -0.01 -0.67 6.43 -2.39 -0.02 -0.69 16 24 H 0.07 2.97 7.99 -2.39 -0.02 2.95 16 25 H 0.01 0.57 8.12 -2.39 -0.02 0.55 16 26 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 2.18 6.21 -2.39 -0.01 2.17 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.07 2.27 6.04 -2.39 -0.01 2.26 16 30 H 0.06 1.54 7.95 -2.39 -0.02 1.52 16 31 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.42 1.15 8.83 -92.71 -0.82 0.34 16 34 H 0.40 3.93 8.93 -92.71 -0.83 3.10 16 35 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 2.21 8.01 -2.39 -0.02 2.19 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -77.67 302.71 -0.71 -78.38 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -0.60 Total: 5.76 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 3.33 Total: -18.93 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -5.43 Total: -94.44 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.05 Total: -18.49 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.67 -0.71 -78.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042251032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.883 kcal (2) G-P(sol) polarization free energy of solvation -77.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds