Wall clock time and date at job start Sun Mar 29 2020 22:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48498 * 109.47317 * 240.00093 * 3 2 1 5 5 H 1.48505 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47326 * 120.00016 * 3 2 1 7 7 C 1.37886 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47105 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47023 * 173.46742 * 10 9 7 12 12 C 1.46908 * 110.99588 * 185.31333 * 11 10 9 13 13 C 1.50700 * 109.46985 * 162.71361 * 12 11 10 14 14 N 1.34770 * 120.00305 * 183.67327 * 13 12 11 15 15 O 1.21289 * 120.00010 * 3.67372 * 13 12 11 16 16 C 1.46896 * 110.99801 * 61.36836 * 11 10 9 17 17 C 1.54261 * 110.03564 * 23.34673 * 16 11 10 18 18 C 1.54969 * 104.16261 * 217.13681 * 17 16 11 19 19 C 1.54890 * 102.77468 * 37.89137 * 18 17 16 20 20 C 1.53880 * 110.02793 * 266.13219 * 16 11 10 21 21 H 0.97000 * 120.00365 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47123 * 60.00487 * 9 7 2 23 23 H 1.09005 * 109.47635 * 300.00513 * 9 7 2 24 24 H 1.09001 * 109.46913 * 53.47059 * 10 9 7 25 25 H 1.08997 * 109.47060 * 293.47110 * 10 9 7 26 26 H 1.08992 * 109.47121 * 282.71322 * 12 11 10 27 27 H 1.08996 * 109.47095 * 42.71571 * 12 11 10 28 28 H 0.97005 * 119.99871 * 0.02562 * 14 13 12 29 29 H 0.96999 * 120.00085 * 179.97438 * 14 13 12 30 30 H 1.09003 * 110.01952 * 144.74830 * 16 11 10 31 31 H 1.08994 * 110.48999 * 335.78912 * 17 16 11 32 32 H 1.09001 * 110.48416 * 98.43143 * 17 16 11 33 33 H 1.08997 * 110.72267 * 279.58006 * 18 17 16 34 34 H 1.08999 * 110.92193 * 156.29630 * 18 17 16 35 35 H 1.08991 * 110.48885 * 203.40172 * 19 18 17 36 36 H 1.09006 * 110.60025 * 80.81493 * 19 18 17 37 37 H 1.08999 * 110.03367 * 238.57075 * 20 16 11 38 38 H 1.08999 * 110.03220 * 359.97438 * 20 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5176 -4.9284 0.1570 12 6 2.4482 -6.0576 0.2879 13 6 1.7193 -7.2454 0.8613 14 7 2.3927 -8.3790 1.1401 15 8 0.5266 -7.1813 1.0718 16 6 0.5847 -5.1417 -0.9575 17 6 1.0427 -4.3370 -2.1914 18 6 -0.2783 -3.8442 -2.8344 19 6 -1.1555 -3.5106 -1.6021 20 6 -0.8125 -4.6168 -0.5830 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.9463 -3.5408 0.8253 25 1 2.7925 -3.6723 -0.9431 26 1 2.8473 -6.3150 -0.6931 27 1 3.2668 -5.7787 0.9514 28 1 3.3467 -8.4302 0.9721 29 1 1.9236 -9.1434 1.5095 30 1 0.5318 -6.2026 -1.2020 31 1 1.6581 -3.4902 -1.8877 32 1 1.5889 -4.9780 -2.8835 33 1 -0.7349 -4.6338 -3.4311 34 1 -0.1081 -2.9539 -3.4398 35 1 -2.2126 -3.5484 -1.8648 36 1 -0.8976 -2.5300 -1.2019 37 1 -1.5435 -5.4228 -0.6467 38 1 -0.7984 -4.2043 0.4258 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042253624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:20 Heat of formation + Delta-G solvation = -23.915463 kcal Electronic energy + Delta-G solvation = -18368.206384 eV Core-core repulsion = 15631.948074 eV Total energy + Delta-G solvation = -2736.258310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.78130 -38.37434 -34.39151 -33.48626 -32.99836 -30.06156 -27.98239 -27.73491 -25.68878 -23.50512 -20.92113 -20.32413 -19.95386 -18.46651 -17.32279 -16.52720 -16.23073 -15.67433 -15.23590 -14.42924 -14.35648 -13.89026 -13.65223 -13.34940 -12.64155 -12.16867 -12.09184 -11.93936 -11.22035 -10.94605 -10.82383 -10.58460 -10.44678 -10.34268 -10.23673 -9.92194 -9.76313 -9.73291 -9.56011 -9.50810 -9.19085 -8.83524 -8.21387 -7.57319 -5.94205 -3.94745 2.87333 3.35645 3.40773 3.42236 3.56743 4.45268 4.61641 5.10546 5.27624 5.32241 5.41858 5.48186 5.52009 5.64600 5.95717 6.17010 6.21708 6.29170 6.35732 6.37144 6.49983 6.51291 6.66832 6.78930 6.84115 6.99641 7.04172 7.14356 7.32992 7.37151 7.60962 7.75241 7.86676 8.05730 8.20400 8.46712 8.50315 9.11583 9.67137 11.16796 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027710 B = 0.007128 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.213855 B = 3927.139862 C = 4476.856339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.050 0.950 9 C 0.002 3.998 10 C 0.056 3.944 11 N -0.516 5.516 12 C 0.032 3.968 13 C 0.513 3.487 14 N -0.866 5.866 15 O -0.517 6.517 16 C 0.098 3.902 17 C -0.179 4.179 18 C -0.114 4.114 19 C -0.138 4.138 20 C -0.099 4.099 21 H 0.260 0.740 22 H 0.057 0.943 23 H 0.025 0.975 24 H 0.058 0.942 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.397 0.603 29 H 0.397 0.603 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.044 0.956 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.047 0.953 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.845 -13.437 -2.450 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.068 0.932 9 C -0.034 4.034 10 C -0.070 4.070 11 N -0.240 5.240 12 C -0.100 4.100 13 C 0.297 3.703 14 N -0.432 5.432 15 O -0.391 6.391 16 C -0.010 4.010 17 C -0.217 4.217 18 C -0.152 4.152 19 C -0.176 4.176 20 C -0.137 4.137 21 H 0.070 0.930 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.225 0.775 29 H 0.227 0.773 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.618 -13.042 -1.937 13.672 hybrid contribution 1.379 0.382 -0.601 1.552 sum 4.996 -12.660 -2.537 13.845 Atomic orbital electron populations 1.69923 1.05824 1.26529 1.50663 1.24924 0.94790 0.98829 0.95486 0.86734 0.79627 0.83591 0.78439 1.20441 1.21373 1.20429 1.21177 0.92803 0.91234 1.50883 0.93159 1.19751 0.94529 0.89376 0.99783 1.22546 0.97532 0.88656 0.98304 1.62133 1.17195 1.00908 1.43719 1.21979 0.95954 0.91667 1.00411 1.20856 0.87981 0.83964 0.77469 1.43932 1.13166 1.16301 1.69768 1.90750 1.15021 1.82360 1.50944 1.22164 0.93459 0.97476 0.87945 1.23575 0.99094 1.02124 0.96935 1.22317 0.95714 0.99653 0.97525 1.22707 0.97773 1.01917 0.95162 1.22023 0.94141 0.96876 1.00694 0.93025 0.92541 0.95684 0.92316 0.95240 0.92450 0.88448 0.77530 0.77315 0.92311 0.86656 0.93686 0.93179 0.92026 0.93339 0.87562 0.93408 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.94 16 9 C 0.00 0.06 3.15 -27.88 -0.09 -0.03 16 10 C 0.06 1.15 4.35 -3.82 -0.02 1.13 16 11 N -0.52 -9.65 3.96 -226.74 -0.90 -10.55 16 12 C 0.03 0.46 5.34 -4.97 -0.03 0.43 16 13 C 0.51 7.40 7.65 -10.99 -0.08 7.31 16 14 N -0.87 -7.94 8.87 31.22 0.28 -7.66 16 15 O -0.52 -9.89 16.21 5.55 0.09 -9.80 16 16 C 0.10 1.81 2.15 -66.60 -0.14 1.67 16 17 C -0.18 -3.22 5.29 -25.03 -0.13 -3.35 16 18 C -0.11 -2.02 6.72 -24.69 -0.17 -2.18 16 19 C -0.14 -2.72 6.12 -25.07 -0.15 -2.87 16 20 C -0.10 -1.97 5.77 -25.61 -0.15 -2.12 16 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.06 1.41 2.25 -51.93 -0.12 1.29 16 23 H 0.02 0.70 7.67 -51.93 -0.40 0.30 16 24 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 25 H 0.03 0.58 6.02 -51.93 -0.31 0.27 16 26 H 0.06 0.72 8.03 -51.93 -0.42 0.30 16 27 H 0.10 1.21 7.85 -51.93 -0.41 0.81 16 28 H 0.40 2.32 8.83 -40.82 -0.36 1.96 16 29 H 0.40 3.22 8.93 -40.82 -0.36 2.86 16 30 H 0.06 1.06 6.88 -51.93 -0.36 0.70 16 31 H 0.12 2.34 3.46 -51.93 -0.18 2.16 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.11 2.50 6.02 -51.93 -0.31 2.19 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.80 7.13 -51.93 -0.37 1.43 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -31.90 292.08 -7.45 -39.35 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.67 Total: 6.16 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.37 Total: -13.07 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.12 Total: -43.44 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.90 -7.45 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042253624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.430 kcal (2) G-P(sol) polarization free energy of solvation -31.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds