Wall clock time and date at job start Sun Mar 29 2020 22:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00143 * 2 1 4 4 H 1.48498 * 109.47317 * 240.00093 * 3 2 1 5 5 H 1.48505 * 109.46856 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47326 * 120.00016 * 3 2 1 7 7 C 1.37886 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99751 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47105 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47023 * 173.46742 * 10 9 7 12 12 C 1.46908 * 110.99588 * 185.31333 * 11 10 9 13 13 C 1.50700 * 109.46985 * 162.71361 * 12 11 10 14 14 N 1.34770 * 120.00305 * 183.67327 * 13 12 11 15 15 O 1.21289 * 120.00010 * 3.67372 * 13 12 11 16 16 C 1.46896 * 110.99801 * 61.36836 * 11 10 9 17 17 C 1.54261 * 110.03564 * 23.34673 * 16 11 10 18 18 C 1.54969 * 104.16261 * 217.13681 * 17 16 11 19 19 C 1.54890 * 102.77468 * 37.89137 * 18 17 16 20 20 C 1.53880 * 110.02793 * 266.13219 * 16 11 10 21 21 H 0.97000 * 120.00365 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47123 * 60.00487 * 9 7 2 23 23 H 1.09005 * 109.47635 * 300.00513 * 9 7 2 24 24 H 1.09001 * 109.46913 * 53.47059 * 10 9 7 25 25 H 1.08997 * 109.47060 * 293.47110 * 10 9 7 26 26 H 1.08992 * 109.47121 * 282.71322 * 12 11 10 27 27 H 1.08996 * 109.47095 * 42.71571 * 12 11 10 28 28 H 0.97005 * 119.99871 * 0.02562 * 14 13 12 29 29 H 0.96999 * 120.00085 * 179.97438 * 14 13 12 30 30 H 1.09003 * 110.01952 * 144.74830 * 16 11 10 31 31 H 1.08994 * 110.48999 * 335.78912 * 17 16 11 32 32 H 1.09001 * 110.48416 * 98.43143 * 17 16 11 33 33 H 1.08997 * 110.72267 * 279.58006 * 18 17 16 34 34 H 1.08999 * 110.92193 * 156.29630 * 18 17 16 35 35 H 1.08991 * 110.48885 * 203.40172 * 19 18 17 36 36 H 1.09006 * 110.60025 * 80.81493 * 19 18 17 37 37 H 1.08999 * 110.03367 * 238.57075 * 20 16 11 38 38 H 1.08999 * 110.03220 * 359.97438 * 20 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5176 -4.9284 0.1570 12 6 2.4482 -6.0576 0.2879 13 6 1.7193 -7.2454 0.8613 14 7 2.3927 -8.3790 1.1401 15 8 0.5266 -7.1813 1.0718 16 6 0.5847 -5.1417 -0.9575 17 6 1.0427 -4.3370 -2.1914 18 6 -0.2783 -3.8442 -2.8344 19 6 -1.1555 -3.5106 -1.6021 20 6 -0.8125 -4.6168 -0.5830 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.9463 -3.5408 0.8253 25 1 2.7925 -3.6723 -0.9431 26 1 2.8473 -6.3150 -0.6931 27 1 3.2668 -5.7787 0.9514 28 1 3.3467 -8.4302 0.9721 29 1 1.9236 -9.1434 1.5095 30 1 0.5318 -6.2026 -1.2020 31 1 1.6581 -3.4902 -1.8877 32 1 1.5889 -4.9780 -2.8835 33 1 -0.7349 -4.6338 -3.4311 34 1 -0.1081 -2.9539 -3.4398 35 1 -2.2126 -3.5484 -1.8648 36 1 -0.8976 -2.5300 -1.2019 37 1 -1.5435 -5.4228 -0.6467 38 1 -0.7984 -4.2043 0.4258 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042253624.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:20 Heat of formation + Delta-G solvation = -48.176931 kcal Electronic energy + Delta-G solvation = -18369.258440 eV Core-core repulsion = 15631.948074 eV Total energy + Delta-G solvation = -2737.310367 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13144 -39.67956 -35.88813 -35.02817 -34.48841 -31.87959 -29.49861 -29.11294 -27.43171 -25.19030 -22.65353 -21.52999 -21.43316 -19.99553 -18.61341 -17.99562 -17.57464 -17.13961 -16.71967 -16.38681 -15.65000 -15.31158 -15.12870 -14.70582 -14.22073 -14.00955 -13.70678 -13.32565 -13.01401 -12.73173 -12.58112 -12.39544 -11.94045 -11.82781 -11.77753 -11.62947 -11.44268 -11.29325 -11.18694 -10.76749 -10.74666 -10.52132 -10.30856 -8.97860 -8.08357 -6.16461 1.43337 1.45364 1.52687 1.78135 2.44002 2.58032 3.23750 3.25627 3.83981 3.85537 4.15300 4.18929 4.32431 4.43355 4.53690 4.62560 4.68911 4.71393 4.79306 4.91262 4.96123 5.05787 5.15894 5.20888 5.33182 5.45756 5.51145 5.65002 5.69857 5.85503 6.01171 6.08567 6.26849 6.35138 6.47103 6.66082 7.01295 7.49604 7.51540 9.02305 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.027710 B = 0.007128 C = 0.006253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.213855 B = 3927.139862 C = 4476.856339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.008 3.992 10 C 0.071 3.929 11 N -0.538 5.538 12 C 0.029 3.971 13 C 0.513 3.487 14 N -0.838 5.838 15 O -0.574 6.574 16 C 0.104 3.896 17 C -0.174 4.174 18 C -0.109 4.109 19 C -0.136 4.136 20 C -0.097 4.097 21 H 0.259 0.741 22 H 0.058 0.942 23 H -0.023 1.023 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.118 0.882 28 H 0.417 0.583 29 H 0.406 0.594 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.905 -14.813 -3.600 16.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.074 0.926 9 C -0.029 4.029 10 C -0.055 4.055 11 N -0.262 5.262 12 C -0.102 4.102 13 C 0.297 3.703 14 N -0.404 5.404 15 O -0.452 6.452 16 C -0.004 4.004 17 C -0.212 4.212 18 C -0.146 4.146 19 C -0.174 4.174 20 C -0.135 4.135 21 H 0.068 0.932 22 H 0.076 0.924 23 H -0.005 1.005 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.136 0.864 28 H 0.248 0.752 29 H 0.237 0.763 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.749 -14.466 -3.083 15.869 hybrid contribution 0.734 0.734 -0.196 1.056 sum 6.483 -13.732 -3.279 15.535 Atomic orbital electron populations 1.70087 1.07449 1.27234 1.51674 1.25791 0.95608 1.02576 0.95190 0.85663 0.78341 0.79037 0.78913 1.19170 1.21339 1.19768 1.21633 0.93307 0.92545 1.50368 0.92567 1.19627 0.94850 0.90875 0.97534 1.22193 0.96136 0.88219 0.98979 1.61901 1.18457 1.01645 1.44220 1.22105 0.95439 0.90100 1.02537 1.20894 0.87295 0.85006 0.77085 1.43636 1.14134 1.14905 1.67709 1.90743 1.17329 1.83443 1.53671 1.22094 0.92333 0.97913 0.88076 1.23469 0.98953 1.01565 0.97221 1.22311 0.95333 1.00425 0.96564 1.22569 0.99131 0.99440 0.96245 1.21973 0.96125 0.96913 0.98487 0.93190 0.92419 1.00480 0.92398 0.93732 0.89493 0.86425 0.75157 0.76269 0.91088 0.89249 0.90536 0.90219 0.92493 0.92029 0.92102 0.92516 0.94139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.91 13.29 21.45 0.28 -55.63 16 2 C 0.01 0.37 5.46 84.66 0.46 0.83 16 3 Si 0.95 44.29 29.54 68.60 2.03 46.31 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.01 0.41 3.15 29.85 0.09 0.51 16 10 C 0.07 2.91 4.35 86.31 0.38 3.29 16 11 N -0.54 -19.80 3.96 -871.28 -3.45 -23.25 16 12 C 0.03 0.76 5.34 85.56 0.46 1.21 16 13 C 0.51 13.69 7.65 87.66 0.67 14.36 16 14 N -0.84 -12.72 8.87 -173.53 -1.54 -14.26 16 15 O -0.57 -21.60 16.21 -3.06 -0.05 -21.65 16 16 C 0.10 3.75 2.15 45.64 0.10 3.85 16 17 C -0.17 -5.93 5.29 31.70 0.17 -5.76 16 18 C -0.11 -3.70 6.72 31.91 0.21 -3.49 16 19 C -0.14 -5.50 6.12 31.67 0.19 -5.31 16 20 C -0.10 -3.94 5.77 31.32 0.18 -3.76 16 21 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 22 H 0.06 3.00 2.25 -2.39 -0.01 2.99 16 23 H -0.02 -1.41 7.67 -2.38 -0.02 -1.43 16 24 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 25 H 0.04 1.69 6.02 -2.39 -0.01 1.68 16 26 H 0.09 1.79 8.03 -2.39 -0.02 1.77 16 27 H 0.12 2.56 7.85 -2.39 -0.02 2.54 16 28 H 0.42 3.18 8.83 -92.70 -0.82 2.37 16 29 H 0.41 5.43 8.93 -92.71 -0.83 4.60 16 30 H 0.07 2.39 6.88 -2.39 -0.02 2.38 16 31 H 0.09 3.55 3.46 -2.39 -0.01 3.54 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.06 3.04 6.02 -2.38 -0.01 3.03 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.04 1.94 7.13 -2.39 -0.02 1.93 16 Total: -1.00 -72.23 292.08 -0.15 -72.38 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -0.57 Total: 20.37 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 3.15 Total: -24.27 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -4.70 Total: -93.13 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.23 -0.15 -72.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042253624.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.199 kcal (2) G-P(sol) polarization free energy of solvation -72.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds