Wall clock time and date at job start Sun Mar 29 2020 22:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34772 * 120.00085 * 2 1 4 4 O 1.21287 * 119.99770 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00335 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.70054 * 2.88707 * 5 3 2 7 7 C 1.53197 * 109.58661 * 242.53468 * 5 3 2 8 8 C 1.53035 * 109.31283 * 185.57309 * 7 5 3 9 9 C 1.53048 * 109.53414 * 61.36809 * 8 7 5 10 10 C 1.53190 * 109.31189 * 298.63105 * 9 8 7 11 11 N 1.46923 * 109.58781 * 123.24796 * 5 3 2 12 12 C 1.34775 * 120.63279 * 353.41158 * 11 5 3 13 13 O 1.21688 * 120.00121 * 4.97732 * 12 11 5 14 14 C 1.46368 * 120.00282 * 184.97123 * 12 11 5 15 15 H 1.08003 * 120.00112 * 9.36175 * 14 12 11 16 16 C 1.40054 * 120.00227 * 189.35458 * 14 12 11 17 17 N 1.30670 * 120.00075 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00046 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47403 * 59.99910 * 18 16 14 20 20 H 1.48497 * 109.47107 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47141 * 299.99843 * 18 16 14 22 22 H 1.09001 * 109.47069 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47453 * 300.00253 * 1 2 3 24 24 H 1.08998 * 109.47293 * 60.00650 * 1 2 3 25 25 H 0.97002 * 120.00360 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.49540 * 305.53017 * 7 5 3 27 27 H 1.08999 * 109.49244 * 65.62109 * 7 5 3 28 28 H 1.08996 * 109.45956 * 181.38303 * 8 7 5 29 29 H 1.08997 * 109.46295 * 301.36232 * 8 7 5 30 30 H 1.09002 * 109.49819 * 58.58358 * 9 8 7 31 31 H 1.09001 * 109.49467 * 178.65027 * 9 8 7 32 32 H 1.08995 * 109.58597 * 174.42415 * 10 9 8 33 33 H 1.09002 * 109.58655 * 294.85122 * 10 9 8 34 34 H 0.96999 * 120.00164 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0134 0.1424 -0.0526 7 6 4.1599 1.8326 1.2800 8 6 5.6838 1.9548 1.2103 9 6 6.0727 2.8341 0.0195 10 6 5.5804 2.1800 -1.2753 11 7 4.1380 1.9264 -1.1582 12 6 3.2825 2.3818 -2.0948 13 8 2.0831 2.2448 -1.9414 14 6 3.7959 3.0412 -3.2964 15 1 4.8550 3.0301 -3.5077 16 6 2.9139 3.6864 -4.1723 17 7 1.6325 3.7002 -3.9165 18 14 3.5692 4.5273 -5.7062 19 1 4.2582 3.5286 -6.5623 20 1 2.4411 5.1316 -6.4596 21 1 4.5291 5.5910 -5.3158 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 1.9501 -0.8400 0.0004 26 1 3.7193 2.8249 1.3764 27 1 3.8826 1.2256 2.1418 28 1 6.0544 2.4057 2.1309 29 1 6.1224 0.9644 1.0887 30 1 5.6141 3.8170 0.1278 31 1 7.1570 2.9403 -0.0154 32 1 5.7669 2.8482 -2.1160 33 1 6.1057 1.2377 -1.4314 34 1 1.0216 4.1467 -4.5233 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042424961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:21 Heat of formation + Delta-G solvation = -56.058446 kcal Electronic energy + Delta-G solvation = -18403.068218 eV Core-core repulsion = 15529.582989 eV Total energy + Delta-G solvation = -2873.485229 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.56766 -37.19447 -35.69129 -33.57232 -32.47614 -31.57216 -30.80985 -26.70016 -26.19096 -24.10808 -22.78989 -20.61490 -19.88369 -18.72119 -17.02405 -15.96502 -15.42452 -15.22208 -14.52521 -14.24483 -13.97605 -13.72693 -13.53666 -13.05174 -12.87403 -12.40622 -12.12994 -11.80926 -11.69115 -11.23246 -11.11341 -10.94305 -10.86059 -10.57931 -10.46225 -10.35215 -10.19061 -9.78449 -8.79457 -8.61711 -8.25650 -7.24258 -7.04184 -6.07869 -4.55911 3.18319 3.23128 3.24691 3.63974 4.04740 4.15168 4.61193 4.73689 5.20942 5.28775 5.30700 5.58316 5.65229 5.73000 5.84800 5.87551 6.00095 6.08091 6.10978 6.23374 6.27515 6.41348 6.46324 6.54964 6.59214 6.82724 7.26278 7.50226 7.56957 8.14600 8.32607 8.40375 9.08265 9.37697 9.51649 10.66740 10.85824 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.021552 B = 0.010604 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.841975 B = 2639.981302 C = 3702.815411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.748 5.748 3 C 0.528 3.472 4 O -0.489 6.489 5 C 0.139 3.861 6 H 0.058 0.942 7 C -0.120 4.120 8 C -0.111 4.111 9 C -0.138 4.138 10 C 0.125 3.875 11 N -0.631 5.631 12 C 0.549 3.451 13 O -0.533 6.533 14 C -0.544 4.544 15 H 0.070 0.930 16 C 0.088 3.912 17 N -0.765 5.765 18 Si 0.904 3.096 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.388 0.612 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 -6.561 7.322 11.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.403 5.403 3 C 0.314 3.686 4 O -0.360 6.360 5 C 0.031 3.969 6 H 0.075 0.925 7 C -0.159 4.159 8 C -0.149 4.149 9 C -0.176 4.176 10 C 0.001 3.999 11 N -0.373 5.373 12 C 0.354 3.646 13 O -0.413 6.413 14 C -0.581 4.581 15 H 0.088 0.912 16 C -0.132 4.132 17 N -0.393 5.393 18 Si 0.729 3.271 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.193 1.193 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.219 0.781 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.931 -5.743 7.322 10.531 hybrid contribution 0.689 -0.045 -0.824 1.075 sum 5.619 -5.787 6.498 10.359 Atomic orbital electron populations 1.21276 0.80715 1.00340 1.01968 1.45627 1.06931 1.08195 1.79544 1.19827 0.88944 0.83721 0.76071 1.90712 1.69465 1.30819 1.45016 1.20663 0.91976 0.95338 0.88927 0.92465 1.21807 0.96105 1.02083 0.95950 1.21446 0.95354 0.99874 0.98241 1.21978 0.99899 0.99909 0.95833 1.21424 0.81972 0.99000 0.97512 1.48261 1.06555 1.59885 1.22553 1.18363 0.85467 0.78498 0.82236 1.90786 1.14649 1.58648 1.77171 1.20868 0.94248 1.37211 1.05784 0.91200 1.25695 0.94389 0.94887 0.98190 1.70015 1.02623 1.32762 1.33927 0.86492 0.78972 0.79872 0.81741 1.19350 1.20653 1.19343 0.92173 0.93485 0.92186 0.78056 0.90762 0.92043 0.92353 0.92313 0.91575 0.91921 0.88675 0.94065 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 10.70 59.85 0.64 2.37 16 2 N -0.75 -13.80 5.71 -67.08 -0.38 -14.18 16 3 C 0.53 12.07 4.82 -10.99 -0.05 12.01 16 4 O -0.49 -13.85 13.87 -20.07 -0.28 -14.12 16 5 C 0.14 2.78 3.31 -68.75 -0.23 2.55 16 6 H 0.06 0.98 7.93 -51.93 -0.41 0.56 16 7 C -0.12 -2.03 5.33 -26.61 -0.14 -2.17 16 8 C -0.11 -1.56 5.88 -26.69 -0.16 -1.72 16 9 C -0.14 -2.13 6.08 -26.61 -0.16 -2.30 16 10 C 0.13 2.33 6.30 -3.71 -0.02 2.31 16 11 N -0.63 -14.60 2.97 -168.19 -0.50 -15.10 16 12 C 0.55 15.91 7.42 -12.99 -0.10 15.81 16 13 O -0.53 -17.24 10.16 -20.42 -0.21 -17.45 16 14 C -0.54 -15.51 8.71 -35.63 -0.31 -15.82 16 15 H 0.07 1.81 5.93 -52.48 -0.31 1.49 16 16 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 17 N -0.76 -23.57 11.87 55.55 0.66 -22.91 16 18 Si 0.90 20.53 29.56 -169.99 -5.02 15.50 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.39 5.64 8.68 -40.82 -0.35 5.28 16 26 H 0.07 1.46 8.02 -51.93 -0.42 1.05 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.88 5.47 -51.93 -0.28 1.60 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.27 7.56 8.29 -40.82 -0.34 7.22 16 LS Contribution 277.13 15.07 4.18 4.18 Total: -1.00 -37.52 277.13 -6.90 -44.42 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.72 Total: 4.21 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: -0.63 Total: 15.46 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.22 Total: -52.19 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.49 Total: -31.57 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -37.52 -6.90 -44.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042424961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.641 kcal (2) G-P(sol) polarization free energy of solvation -37.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds