Wall clock time and date at job start Sun Mar 29 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34784 * 119.99328 * 2 1 4 4 O 1.21271 * 120.00237 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99730 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.58561 * 350.07753 * 5 3 2 7 7 C 1.53188 * 109.58788 * 110.35742 * 5 3 2 8 8 C 1.53038 * 109.31484 * 174.42118 * 7 5 3 9 9 C 1.53048 * 109.53929 * 298.63856 * 8 7 5 10 10 C 1.53199 * 109.31045 * 61.36250 * 9 8 7 11 11 N 1.46924 * 109.58668 * 229.65220 * 5 3 2 12 12 C 1.34774 * 120.63033 * 6.58092 * 11 5 3 13 13 O 1.21693 * 120.00358 * 5.27457 * 12 11 5 14 14 C 1.46370 * 120.00281 * 185.28162 * 12 11 5 15 15 H 1.08003 * 120.00088 * 9.81120 * 14 12 11 16 16 C 1.40048 * 120.00469 * 189.81685 * 14 12 11 17 17 N 1.30674 * 120.00090 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 120.00366 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.46896 * 59.99545 * 18 16 14 20 20 H 1.48496 * 109.47262 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46929 * 299.99854 * 18 16 14 22 22 H 1.09008 * 109.46920 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47697 * 60.00553 * 1 2 3 24 24 H 1.09001 * 109.47477 * 299.99412 * 1 2 3 25 25 H 0.96997 * 120.00381 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.50334 * 294.37635 * 7 5 3 27 27 H 1.08999 * 109.49721 * 54.44221 * 7 5 3 28 28 H 1.09006 * 109.46084 * 58.65877 * 8 7 5 29 29 H 1.08999 * 109.46584 * 178.61719 * 8 7 5 30 30 H 1.08997 * 109.50012 * 181.30969 * 9 8 7 31 31 H 1.08999 * 109.49697 * 301.41114 * 9 8 7 32 32 H 1.08998 * 109.58425 * 65.14939 * 10 9 8 33 33 H 1.08993 * 109.58601 * 185.43541 * 10 9 8 34 34 H 0.96993 * 120.00539 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1387 1.1673 0.0000 4 8 1.5323 2.2175 -0.0005 5 6 3.6458 1.1674 -0.0006 6 1 4.0113 0.1558 0.1760 7 6 4.1588 1.6698 -1.3538 8 6 5.6827 1.7998 -1.3008 9 6 6.0725 2.8191 -0.2277 10 6 5.5811 2.3296 1.1383 11 7 4.1387 2.0634 1.0544 12 6 3.2838 2.6308 1.9283 13 8 2.1050 2.3290 1.9095 14 6 3.7730 3.6100 2.8999 15 1 4.7781 3.9968 2.8176 16 6 2.9380 4.0455 3.9364 17 7 1.7218 3.5780 4.0359 18 14 3.5627 5.2948 5.1769 19 1 3.9415 6.5455 4.4718 20 1 2.4937 5.5884 6.1650 21 1 4.7492 4.7438 5.8796 22 1 -0.3633 -1.0278 0.0005 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 0.5137 0.8900 25 1 1.9500 -0.8400 -0.0004 26 1 3.8810 0.9613 -2.1341 27 1 3.7177 2.6425 -1.5717 28 1 6.1216 0.8318 -1.0587 29 1 6.0527 2.1337 -2.2702 30 1 7.1568 2.9284 -0.2064 31 1 5.6138 3.7811 -0.4560 32 1 6.1065 1.4137 1.4088 33 1 5.7704 3.0953 1.8905 34 1 1.1436 3.8793 4.7540 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042424962.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:23 Heat of formation + Delta-G solvation = -54.209964 kcal Electronic energy + Delta-G solvation = -18394.913541 eV Core-core repulsion = 15521.508468 eV Total energy + Delta-G solvation = -2873.405073 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.58858 -37.20413 -35.69414 -33.59252 -32.45233 -31.56104 -30.83243 -26.69304 -26.19796 -24.09521 -22.81115 -20.63032 -19.89461 -18.69557 -17.03125 -16.01106 -15.43865 -15.22939 -14.51175 -14.23856 -13.98230 -13.74563 -13.52985 -13.08657 -12.88332 -12.39572 -12.20168 -11.85071 -11.70835 -11.15424 -11.12372 -10.94614 -10.86544 -10.57851 -10.51772 -10.32796 -10.15918 -9.75471 -8.79755 -8.60740 -8.27090 -7.28765 -6.98975 -6.06987 -4.53133 3.19475 3.24377 3.25785 3.63842 4.02306 4.16747 4.59336 4.76649 5.19030 5.26687 5.29293 5.56854 5.65536 5.72689 5.83718 5.87067 5.98890 6.06513 6.11115 6.22082 6.26228 6.40369 6.44026 6.51714 6.58910 6.81721 7.23843 7.52837 7.58473 8.16728 8.31676 8.41166 9.10495 9.36175 9.52366 10.68678 10.88063 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.021710 B = 0.010576 C = 0.007480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.390630 B = 2646.907976 C = 3742.365268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.748 5.748 3 C 0.526 3.474 4 O -0.488 6.488 5 C 0.140 3.860 6 H 0.059 0.941 7 C -0.121 4.121 8 C -0.111 4.111 9 C -0.138 4.138 10 C 0.125 3.875 11 N -0.632 5.632 12 C 0.552 3.448 13 O -0.534 6.534 14 C -0.543 4.543 15 H 0.070 0.930 16 C 0.089 3.911 17 N -0.769 5.769 18 Si 0.905 3.095 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.269 1.269 22 H 0.060 0.940 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.388 0.612 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 -6.641 -7.649 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.403 5.403 3 C 0.312 3.688 4 O -0.359 6.359 5 C 0.031 3.969 6 H 0.076 0.924 7 C -0.160 4.160 8 C -0.149 4.149 9 C -0.177 4.177 10 C 0.000 4.000 11 N -0.373 5.373 12 C 0.357 3.643 13 O -0.413 6.413 14 C -0.580 4.580 15 H 0.088 0.912 16 C -0.131 4.131 17 N -0.398 5.398 18 Si 0.729 3.271 19 H -0.193 1.193 20 H -0.207 1.207 21 H -0.194 1.194 22 H 0.079 0.921 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.220 0.780 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.870 -5.976 -7.525 10.773 hybrid contribution 0.655 0.133 0.677 0.951 sum 5.525 -5.843 -6.848 10.562 Atomic orbital electron populations 1.21283 0.80692 1.00393 1.01975 1.45610 1.06931 1.08185 1.79556 1.19860 0.89007 0.83685 0.76268 1.90721 1.69608 1.30822 1.44709 1.20617 0.91895 0.94416 0.89930 0.92356 1.21810 0.96230 1.02276 0.95651 1.21445 0.95282 0.99439 0.98738 1.21986 0.99923 0.99415 0.96350 1.21428 0.81977 1.00029 0.96518 1.48226 1.06501 1.50779 1.31781 1.18268 0.84807 0.81478 0.79728 1.90744 1.16106 1.64116 1.70340 1.20852 1.00288 1.25145 1.11666 0.91204 1.25682 0.94135 0.95632 0.97623 1.69996 1.05841 1.36295 1.27658 0.86488 0.78932 0.81377 0.80255 1.19329 1.20669 1.19370 0.92118 0.93457 0.92203 0.78012 0.91961 0.90918 0.92272 0.92344 0.91925 0.91575 0.94045 0.88615 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.70 59.85 0.64 2.34 16 2 N -0.75 -13.66 5.71 -67.08 -0.38 -14.05 16 3 C 0.53 11.98 4.95 -10.98 -0.05 11.93 16 4 O -0.49 -13.81 13.73 -20.13 -0.28 -14.08 16 5 C 0.14 2.79 3.30 -68.75 -0.23 2.56 16 6 H 0.06 1.01 7.96 -51.93 -0.41 0.59 16 7 C -0.12 -1.99 5.35 -26.61 -0.14 -2.13 16 8 C -0.11 -1.53 5.88 -26.69 -0.16 -1.69 16 9 C -0.14 -2.12 6.08 -26.60 -0.16 -2.28 16 10 C 0.12 2.33 6.34 -3.71 -0.02 2.30 16 11 N -0.63 -14.68 2.97 -168.19 -0.50 -15.18 16 12 C 0.55 16.12 7.21 -12.99 -0.09 16.02 16 13 O -0.53 -17.37 10.30 -20.50 -0.21 -17.58 16 14 C -0.54 -15.62 8.80 -35.63 -0.31 -15.93 16 15 H 0.07 1.83 5.76 -52.48 -0.30 1.53 16 16 C 0.09 2.53 5.50 -17.37 -0.10 2.44 16 17 N -0.77 -23.71 11.88 55.55 0.66 -23.05 16 18 Si 0.90 20.68 29.56 -169.99 -5.02 15.65 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.39 5.55 8.70 -40.82 -0.35 5.19 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.90 5.35 -51.93 -0.28 1.62 16 34 H 0.27 7.54 8.29 -40.82 -0.34 7.21 16 LS Contribution 277.07 15.07 4.18 4.18 Total: -1.00 -37.76 277.07 -6.90 -44.65 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -4.71 Total: 3.90 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -0.63 Total: 15.57 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: -0.22 Total: -52.28 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.49 Total: -31.67 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -37.76 -6.90 -44.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042424962.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.556 kcal (2) G-P(sol) polarization free energy of solvation -37.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds