Wall clock time and date at job start Sun Mar 29 2020 22:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21277 * 119.99510 * 2 1 4 4 N 1.34771 * 120.00143 * 180.02562 * 2 1 3 5 5 C 1.42112 * 121.47138 * 180.02562 * 4 2 1 6 6 C 1.56368 * 114.62407 * 276.09289 * 5 4 2 7 7 C 1.55826 * 107.18271 * 322.01959 * 6 5 4 8 8 N 1.42102 * 114.96582 * 322.02740 * 7 6 5 9 9 C 1.34776 * 121.47778 * 276.30343 * 8 7 6 10 10 O 1.21683 * 120.00096 * 359.72177 * 9 8 7 11 11 C 1.46379 * 119.99924 * 179.72104 * 9 8 7 12 12 H 1.08001 * 119.99756 * 352.75883 * 11 9 8 13 13 C 1.40047 * 120.00240 * 172.75531 * 11 9 8 14 14 N 1.30666 * 120.00247 * 174.43376 * 13 11 9 15 15 Si 1.86797 * 119.99784 * 354.43825 * 13 11 9 16 16 H 1.48505 * 109.47422 * 59.99887 * 15 13 11 17 17 H 1.48500 * 109.47285 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47430 * 299.99770 * 15 13 11 19 19 C 1.48554 * 117.04538 * 96.04026 * 8 7 6 20 20 C 1.45876 * 109.64102 * 279.85011 * 19 8 7 21 21 H 1.08996 * 109.46972 * 269.99222 * 1 2 3 22 22 H 1.08999 * 109.47817 * 30.00061 * 1 2 3 23 23 H 1.09007 * 109.46661 * 149.99755 * 1 2 3 24 24 H 1.09004 * 108.44864 * 37.42738 * 5 4 2 25 25 H 1.09005 * 108.45236 * 154.75860 * 5 4 2 26 26 H 1.09003 * 109.89495 * 81.49855 * 6 5 4 27 27 H 1.08997 * 109.89373 * 202.53835 * 6 5 4 28 28 H 1.09002 * 108.13022 * 200.70761 * 7 6 5 29 29 H 1.08994 * 108.42080 * 83.57107 * 7 6 5 30 30 H 0.96999 * 120.00168 * 3.39174 * 14 13 11 31 31 H 1.09007 * 109.44127 * 39.89343 * 19 8 7 32 32 H 1.08999 * 109.44879 * 159.82937 * 19 8 7 33 33 H 1.08994 * 109.43837 * 173.98285 * 20 19 8 34 34 H 1.08997 * 109.43601 * 293.91137 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6015 -1.2036 0.0000 6 6 4.2573 -1.0685 -1.4131 7 6 3.3621 -1.8598 -2.4135 8 7 2.8182 -3.0697 -1.9040 9 6 3.5246 -4.2175 -1.9127 10 8 4.6527 -4.2342 -2.3684 11 6 2.9346 -5.4440 -1.3739 12 1 1.9830 -5.4070 -0.8646 13 6 3.6041 -6.6655 -1.5190 14 7 3.1332 -7.7409 -0.9453 15 14 5.1706 -6.7573 -2.5325 16 1 6.1936 -5.8550 -1.9456 17 1 5.6811 -8.1518 -2.5294 18 1 4.8828 -6.3382 -3.9277 19 6 1.4386 -3.0120 -1.3560 20 6 1.4715 -2.4723 -0.0011 21 1 -0.3633 -0.0001 1.0276 22 1 -0.3635 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 3.9672 -0.3920 0.6291 25 1 3.9223 -2.1477 0.4404 26 1 4.3011 -0.0186 -1.7029 27 1 5.2618 -1.4912 -1.3978 28 1 3.9619 -2.0945 -3.2929 29 1 2.5397 -1.2154 -2.7237 30 1 2.2940 -7.7039 -0.4601 31 1 0.8240 -2.3703 -1.9873 32 1 1.0138 -4.0156 -1.3360 33 1 0.4521 -2.3313 0.3580 34 1 1.9940 -3.1690 0.6543 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042681502.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:00 Heat of formation + Delta-G solvation = -76.175269 kcal Electronic energy + Delta-G solvation = -18289.716166 eV Core-core repulsion = 15415.358606 eV Total energy + Delta-G solvation = -2874.357560 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31354 -38.41744 -36.32588 -33.78593 -33.18008 -32.66231 -29.93104 -28.11865 -26.81111 -24.87591 -22.94515 -21.92864 -19.03432 -18.76780 -17.59144 -16.83262 -16.26295 -15.74602 -15.39312 -14.80080 -14.36006 -13.88482 -13.62908 -13.40403 -13.13921 -12.79264 -12.71925 -12.40884 -12.26718 -12.07200 -11.42237 -11.21399 -11.19200 -10.87534 -10.50699 -10.28939 -10.22438 -9.72614 -9.21313 -9.03315 -8.54813 -7.97096 -7.72868 -7.06391 -5.01472 2.68608 3.19178 3.51859 3.63542 3.95276 4.16608 4.27445 4.53132 4.58073 5.08687 5.12826 5.27199 5.32870 5.35214 5.41659 5.47344 5.48941 5.70482 5.80763 5.81244 5.98945 6.05591 6.21741 6.26994 6.40140 6.41560 6.80817 7.11673 7.57113 7.63268 7.76343 8.07812 8.28418 8.74713 8.86753 9.96789 10.25824 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.039566 B = 0.007832 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.502032 B = 3574.197160 C = 3985.401772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.511 3.489 3 O -0.553 6.553 4 N -0.594 5.594 5 C 0.118 3.882 6 C -0.150 4.150 7 C 0.131 3.869 8 N -0.621 5.621 9 C 0.555 3.445 10 O -0.610 6.610 11 C -0.597 4.597 12 H 0.075 0.925 13 C 0.062 3.938 14 N -0.831 5.831 15 Si 1.125 2.875 16 H -0.279 1.279 17 H -0.321 1.321 18 H -0.292 1.292 19 C 0.099 3.901 20 C 0.089 3.911 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.277 0.723 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.101 9.753 2.217 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.431 6.431 4 N -0.326 5.326 5 C -0.007 4.007 6 C -0.191 4.191 7 C 0.004 3.996 8 N -0.354 5.354 9 C 0.366 3.634 10 O -0.503 6.503 11 C -0.633 4.633 12 H 0.093 0.907 13 C -0.156 4.156 14 N -0.458 5.458 15 Si 0.958 3.042 16 H -0.206 1.206 17 H -0.253 1.253 18 H -0.219 1.219 19 C -0.025 4.025 20 C -0.034 4.034 21 H 0.109 0.891 22 H 0.108 0.892 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.121 9.276 1.552 10.709 hybrid contribution -1.557 1.072 0.665 2.004 sum -6.679 10.348 2.216 12.514 Atomic orbital electron populations 1.21936 0.92175 1.04748 1.04509 1.20716 0.90539 0.82945 0.75740 1.90686 1.70916 1.31036 1.50508 1.47340 1.07064 1.06012 1.72191 1.20942 0.80206 1.02130 0.97453 1.23497 1.00087 0.99830 0.95657 1.20495 0.96556 0.86542 0.95991 1.46983 1.14412 1.08403 1.65594 1.18465 0.84206 0.82667 0.78068 1.90190 1.20682 1.83726 1.55660 1.22081 1.09003 0.92273 1.39954 0.90716 1.27114 1.03791 0.90727 0.93971 1.70674 1.19357 1.30753 1.24995 0.82459 0.74344 0.71536 0.75904 1.20571 1.25298 1.21896 1.20822 0.85574 1.02706 0.93398 1.21344 0.97925 0.84367 0.99775 0.89074 0.89181 0.89939 0.91970 0.90860 0.91588 0.90552 0.92092 0.93409 0.91219 0.92290 0.88018 0.89549 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.39 36.01 0.34 -1.34 16 2 C 0.51 7.45 7.81 -10.99 -0.09 7.36 16 3 O -0.55 -10.16 16.86 5.56 0.09 -10.06 16 4 N -0.59 -8.83 2.24 -177.14 -0.40 -9.23 16 5 C 0.12 1.96 5.14 -4.53 -0.02 1.94 16 6 C -0.15 -2.61 6.96 -23.41 -0.16 -2.77 16 7 C 0.13 2.44 5.09 -4.84 -0.02 2.41 16 8 N -0.62 -12.58 2.25 -179.17 -0.40 -12.98 16 9 C 0.56 14.00 7.44 -12.99 -0.10 13.90 16 10 O -0.61 -17.04 11.84 5.20 0.06 -16.98 16 11 C -0.60 -15.61 9.19 -35.63 -0.33 -15.94 16 12 H 0.07 1.85 6.25 -52.49 -0.33 1.52 16 13 C 0.06 1.71 5.52 -17.37 -0.10 1.61 16 14 N -0.83 -22.90 13.65 55.55 0.76 -22.14 16 15 Si 1.12 29.07 26.05 -169.99 -4.43 24.65 16 16 H -0.28 -7.48 6.73 56.52 0.38 -7.09 16 17 H -0.32 -8.04 7.11 56.52 0.40 -7.64 16 18 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 19 C 0.10 1.55 5.58 -6.28 -0.04 1.52 16 20 C 0.09 1.19 5.37 -6.28 -0.03 1.16 16 21 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 0.66 6.54 -51.93 -0.34 0.32 16 24 H 0.06 1.03 7.62 -51.93 -0.40 0.64 16 25 H 0.07 1.31 7.62 -51.93 -0.40 0.91 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 28 H 0.06 1.24 7.61 -51.93 -0.40 0.84 16 29 H 0.05 0.81 7.62 -51.93 -0.40 0.41 16 30 H 0.28 7.26 8.72 -40.82 -0.36 6.90 16 31 H 0.06 0.79 7.80 -51.93 -0.41 0.39 16 32 H 0.10 1.67 5.91 -51.93 -0.31 1.36 16 33 H 0.09 0.83 6.21 -51.93 -0.32 0.51 16 34 H 0.09 1.32 7.80 -51.93 -0.40 0.91 16 LS Contribution 273.58 15.07 4.12 4.12 Total: -1.00 -32.36 273.58 -5.29 -37.65 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -4.55 Total: -4.87 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -0.55 Total: 9.85 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.04 Total: -44.35 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: 0.16 Total: -27.04 kcal Atomic # 14 Polarization: 29.07 SS G_CDS: -4.43 Total: 24.65 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.36 -5.29 -37.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042681502.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.527 kcal (2) G-P(sol) polarization free energy of solvation -32.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds