Wall clock time and date at job start Sun Mar 29 2020 22:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99384 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99853 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.47998 * 111.00125 * 298.71681 * 14 13 11 16 16 C 1.50446 * 112.82729 * 191.34717 * 15 14 13 17 17 C 1.54306 * 108.50307 * 93.72636 * 16 15 14 18 18 C 1.45879 * 112.18704 * 281.46830 * 17 16 15 19 19 C 1.54312 * 112.18736 * 61.11756 * 18 17 16 20 20 C 1.48006 * 110.99894 * 169.99766 * 14 13 11 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 23 23 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 24 24 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 25 25 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 26 26 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 27 27 H 1.08998 * 108.81296 * 312.21219 * 15 14 13 28 28 H 1.09005 * 108.81204 * 70.48700 * 15 14 13 29 29 H 1.09001 * 109.63318 * 334.02739 * 16 15 14 30 30 H 1.08998 * 109.63338 * 213.43567 * 16 15 14 31 31 H 1.08999 * 108.94134 * 160.76486 * 17 16 15 32 32 H 1.08999 * 108.86462 * 42.11541 * 17 16 15 33 33 H 1.08997 * 108.93817 * 300.42132 * 18 17 16 34 34 H 1.08997 * 108.94061 * 181.81568 * 18 17 16 35 35 H 1.08994 * 109.63308 * 161.76346 * 19 18 17 36 36 H 1.09004 * 109.62972 * 41.16068 * 19 18 17 37 37 H 1.08994 * 108.81045 * 205.70400 * 20 14 13 38 38 H 1.09002 * 108.80974 * 324.09042 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 1.1571 -7.4276 1.2140 16 6 0.6009 -8.8136 1.3958 17 6 1.5537 -9.6070 2.3144 18 6 2.7329 -10.0870 1.6022 19 6 3.5750 -8.9306 1.0236 20 6 2.9122 -8.4408 -0.2350 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 3.1568 -3.4354 0.0021 25 1 3.3612 -5.9713 -0.8858 26 1 3.3585 -5.9707 0.8942 27 1 1.7571 -7.1723 2.0874 28 1 0.3285 -6.7231 1.1414 29 1 0.5287 -9.3092 0.4277 30 1 -0.3859 -8.7549 1.8549 31 1 1.0174 -10.4616 2.7270 32 1 1.8730 -8.9616 3.1327 33 1 2.4137 -10.7350 0.7859 34 1 3.3505 -10.6649 2.2896 35 1 4.5788 -9.2878 0.7938 36 1 3.6292 -8.1185 1.7488 37 1 2.3442 -9.2604 -0.6750 38 1 3.6844 -8.1311 -0.9393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048374161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:16 Heat of formation + Delta-G solvation = -44.214039 kcal Electronic energy + Delta-G solvation = -17490.522603 eV Core-core repulsion = 14753.384080 eV Total energy + Delta-G solvation = -2737.138523 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.67631 -38.16964 -34.47788 -33.94821 -32.32436 -32.04133 -28.92833 -26.95279 -24.94083 -24.61214 -22.35378 -20.63008 -19.83972 -19.39618 -17.18097 -16.30132 -15.94197 -15.34723 -15.14318 -14.58508 -14.48380 -13.94510 -13.65732 -13.51902 -13.07479 -12.92285 -12.45298 -12.25717 -11.91988 -11.89916 -11.27217 -11.17664 -11.00511 -10.95730 -10.86415 -10.71123 -10.59166 -10.32083 -10.14342 -9.37548 -8.91134 -8.71112 -7.97809 -7.78236 -6.15107 -4.21934 3.25015 3.31003 3.33385 3.43956 3.74210 4.27936 4.44749 4.56052 4.70036 4.88599 5.08665 5.20532 5.20952 5.37037 5.40542 5.48236 5.52740 5.61408 5.65964 5.71649 5.82217 5.93639 5.96646 6.03387 6.09754 6.21552 6.32543 6.53551 7.12553 7.32161 7.37982 7.50185 7.55069 7.70516 7.99398 8.67623 8.81807 9.17677 9.45044 10.95125 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054571 B = 0.004286 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.966772 B = 6530.955587 C = 6759.509684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.498 3.502 12 O -0.540 6.540 13 C 0.040 3.960 14 N -0.531 5.531 15 C 0.054 3.946 16 C -0.118 4.118 17 C -0.123 4.123 18 C -0.115 4.115 19 C -0.151 4.151 20 C 0.059 3.941 21 H 0.266 0.734 22 H 0.027 0.973 23 H 0.025 0.975 24 H 0.389 0.611 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.024 0.976 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.718 -17.439 2.602 19.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.365 5.365 11 C 0.282 3.718 12 O -0.418 6.418 13 C -0.092 4.092 14 N -0.256 5.256 15 C -0.073 4.073 16 C -0.156 4.156 17 C -0.161 4.161 18 C -0.152 4.152 19 C -0.190 4.190 20 C -0.069 4.069 21 H 0.075 0.925 22 H 0.045 0.955 23 H 0.043 0.957 24 H 0.221 0.779 25 H 0.115 0.885 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.356 -17.446 2.241 18.702 hybrid contribution 1.546 1.048 0.701 1.995 sum 7.902 -16.397 2.941 18.438 Atomic orbital electron populations 1.69974 1.06109 1.27272 1.48948 1.24952 0.94902 0.99429 0.94728 0.86422 0.79611 0.82691 0.78221 1.20455 1.21015 1.19773 1.21238 0.93251 0.90515 1.53141 0.91941 1.19075 0.88299 0.81932 0.97666 1.46448 1.11014 1.06128 1.72876 1.20360 0.89614 0.84114 0.77712 1.90587 1.16801 1.84423 1.49967 1.22020 0.95348 0.89648 1.02158 1.61538 1.23558 1.00228 1.40250 1.22051 0.98023 0.98171 0.89018 1.21424 0.98412 0.95623 1.00115 1.20643 0.96576 1.00101 0.98762 1.20529 0.96767 0.97742 1.00167 1.21959 0.99179 0.98758 0.99115 1.21939 0.94733 0.93830 0.96358 0.92463 0.95545 0.95664 0.77873 0.88529 0.92867 0.95755 0.87849 0.90853 0.91196 0.92370 0.92414 0.92053 0.92650 0.91524 0.91783 0.90753 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.72 5.43 -5.19 -0.03 6.69 16 10 N -0.72 -15.19 5.55 -61.47 -0.34 -15.53 16 11 C 0.50 10.06 7.57 -10.98 -0.08 9.98 16 12 O -0.54 -13.01 13.96 5.56 0.08 -12.94 16 13 C 0.04 0.59 5.35 -4.97 -0.03 0.56 16 14 N -0.53 -7.77 4.50 -237.34 -1.07 -8.84 16 15 C 0.05 0.80 4.41 -4.49 -0.02 0.78 16 16 C -0.12 -1.41 5.63 -27.32 -0.15 -1.56 16 17 C -0.12 -1.22 5.30 -29.42 -0.16 -1.38 16 18 C -0.11 -1.03 5.30 -29.41 -0.16 -1.19 16 19 C -0.15 -1.45 5.60 -27.32 -0.15 -1.61 16 20 C 0.06 0.65 5.16 -4.49 -0.02 0.63 16 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 25 H 0.10 1.24 7.80 -51.93 -0.40 0.83 16 26 H 0.05 0.71 7.81 -51.93 -0.41 0.30 16 27 H 0.02 0.36 6.44 -51.93 -0.33 0.02 16 28 H 0.10 1.92 5.73 -51.93 -0.30 1.62 16 29 H 0.07 0.88 7.08 -51.93 -0.37 0.52 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 33 H 0.06 0.53 7.52 -51.93 -0.39 0.14 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.70 6.74 -51.93 -0.35 0.35 16 37 H 0.07 0.80 6.59 -51.93 -0.34 0.46 16 38 H 0.07 0.67 7.64 -51.93 -0.40 0.27 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -31.47 296.55 -8.45 -39.92 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.09 Total: 3.11 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -1.22 Total: -0.56 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.67 Total: -49.89 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.47 -8.45 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048374161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.295 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds