Wall clock time and date at job start Sun Mar 29 2020 22:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48495 * 109.46968 * 29.99384 * 3 2 1 6 6 H 1.48499 * 109.47437 * 149.99853 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.47998 * 111.00125 * 298.71681 * 14 13 11 16 16 C 1.50446 * 112.82729 * 191.34717 * 15 14 13 17 17 C 1.54306 * 108.50307 * 93.72636 * 16 15 14 18 18 C 1.45879 * 112.18704 * 281.46830 * 17 16 15 19 19 C 1.54312 * 112.18736 * 61.11756 * 18 17 16 20 20 C 1.48006 * 110.99894 * 169.99766 * 14 13 11 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 23 23 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 24 24 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 25 25 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 26 26 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 27 27 H 1.08998 * 108.81296 * 312.21219 * 15 14 13 28 28 H 1.09005 * 108.81204 * 70.48700 * 15 14 13 29 29 H 1.09001 * 109.63318 * 334.02739 * 16 15 14 30 30 H 1.08998 * 109.63338 * 213.43567 * 16 15 14 31 31 H 1.08999 * 108.94134 * 160.76486 * 17 16 15 32 32 H 1.08999 * 108.86462 * 42.11541 * 17 16 15 33 33 H 1.08997 * 108.93817 * 300.42132 * 18 17 16 34 34 H 1.08997 * 108.94061 * 181.81568 * 18 17 16 35 35 H 1.08994 * 109.63308 * 161.76346 * 19 18 17 36 36 H 1.09004 * 109.62972 * 41.16068 * 19 18 17 37 37 H 1.08994 * 108.81045 * 205.70400 * 20 14 13 38 38 H 1.09002 * 108.80974 * 324.09042 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 1.1571 -7.4276 1.2140 16 6 0.6009 -8.8136 1.3958 17 6 1.5537 -9.6070 2.3144 18 6 2.7329 -10.0870 1.6022 19 6 3.5750 -8.9306 1.0236 20 6 2.9122 -8.4408 -0.2350 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 3.1568 -3.4354 0.0021 25 1 3.3612 -5.9713 -0.8858 26 1 3.3585 -5.9707 0.8942 27 1 1.7571 -7.1723 2.0874 28 1 0.3285 -6.7231 1.1414 29 1 0.5287 -9.3092 0.4277 30 1 -0.3859 -8.7549 1.8549 31 1 1.0174 -10.4616 2.7270 32 1 1.8730 -8.9616 3.1327 33 1 2.4137 -10.7350 0.7859 34 1 3.3505 -10.6649 2.2896 35 1 4.5788 -9.2878 0.7938 36 1 3.6292 -8.1185 1.7488 37 1 2.3442 -9.2604 -0.6750 38 1 3.6844 -8.1311 -0.9393 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048374161.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:15 Heat of formation + Delta-G solvation = -67.387288 kcal Electronic energy + Delta-G solvation = -17491.527470 eV Core-core repulsion = 14753.384080 eV Total energy + Delta-G solvation = -2738.143390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96862 -39.53295 -36.17363 -35.25752 -34.33931 -32.97715 -30.41000 -28.64456 -26.04828 -25.73949 -24.25701 -21.59677 -21.28837 -20.56187 -18.95153 -17.70381 -17.32799 -16.85552 -16.62103 -16.20608 -15.88141 -15.13372 -14.99852 -14.49948 -14.34287 -14.13958 -14.00415 -13.72866 -13.61148 -13.13517 -12.90540 -12.73503 -12.42325 -12.22941 -12.13731 -11.90364 -11.57479 -11.48840 -11.41849 -11.07065 -10.79623 -10.53828 -9.79646 -9.05338 -8.28990 -6.45873 1.43071 1.45719 1.56892 1.81068 2.28666 2.48114 3.05707 3.06269 3.76530 3.87130 3.97410 4.09316 4.21075 4.32810 4.34506 4.47101 4.53497 4.59683 4.72370 4.85904 4.90733 5.08435 5.11938 5.17688 5.24178 5.24820 5.29307 5.35986 5.41139 5.48828 5.51499 5.72892 5.85623 6.05402 6.30955 6.65640 6.96754 7.24037 7.55487 8.83320 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.054571 B = 0.004286 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.966772 B = 6530.955587 C = 6759.509684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.268 3.732 10 N -0.710 5.710 11 C 0.491 3.509 12 O -0.584 6.584 13 C 0.054 3.946 14 N -0.552 5.552 15 C 0.061 3.939 16 C -0.115 4.115 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.147 4.147 20 C 0.060 3.940 21 H 0.269 0.731 22 H -0.015 1.015 23 H -0.015 1.015 24 H 0.408 0.592 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.023 0.977 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.078 0.922 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.756 -18.328 2.620 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.145 3.855 10 N -0.361 5.361 11 C 0.278 3.722 12 O -0.465 6.465 13 C -0.077 4.077 14 N -0.278 5.278 15 C -0.066 4.066 16 C -0.152 4.152 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.186 4.186 20 C -0.067 4.067 21 H 0.077 0.923 22 H 0.003 0.997 23 H 0.003 0.997 24 H 0.243 0.757 25 H 0.145 0.855 26 H 0.095 0.905 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.448 -18.377 2.258 20.786 hybrid contribution 0.531 1.256 0.682 1.524 sum 9.979 -17.121 2.940 20.034 Atomic orbital electron populations 1.70142 1.08335 1.28561 1.50017 1.26084 0.95765 1.03959 0.93829 0.85145 0.78486 0.76890 0.78621 1.19565 1.20977 1.17852 1.21633 0.94325 0.90589 1.52858 0.89770 1.18497 0.88699 0.84412 0.93865 1.46190 1.11106 1.05517 1.73297 1.21458 0.90088 0.84829 0.75779 1.90585 1.19354 1.85090 1.51478 1.21950 0.93753 0.87371 1.04622 1.61448 1.24982 1.01240 1.40134 1.21869 0.96736 0.98722 0.89299 1.21390 0.98861 0.94264 1.00729 1.20592 0.96703 1.00058 0.98082 1.20543 0.96341 0.97728 1.00649 1.21926 1.00232 0.98546 0.97850 1.22032 0.94574 0.92466 0.97593 0.92261 0.99678 0.99726 0.75692 0.85507 0.90459 0.95874 0.92531 0.90864 0.91495 0.90914 0.93064 0.91313 0.91111 0.89349 0.93017 0.90376 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.56 -30.61 9.28 25.60 0.24 -30.38 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 15.04 5.43 85.63 0.46 15.50 16 10 N -0.71 -30.59 5.55 -466.78 -2.59 -33.18 16 11 C 0.49 20.23 7.57 87.66 0.66 20.90 16 12 O -0.58 -29.77 13.96 -3.03 -0.04 -29.81 16 13 C 0.05 1.51 5.35 85.56 0.46 1.97 16 14 N -0.55 -15.57 4.50 -904.81 -4.07 -19.64 16 15 C 0.06 1.83 4.41 85.27 0.38 2.21 16 16 C -0.11 -2.69 5.63 30.21 0.17 -2.52 16 17 C -0.12 -2.09 5.30 28.85 0.15 -1.94 16 18 C -0.12 -1.71 5.30 28.86 0.15 -1.56 16 19 C -0.15 -2.34 5.60 30.21 0.17 -2.17 16 20 C 0.06 1.16 5.16 85.26 0.44 1.59 16 21 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 22 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 23 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 24 H 0.41 14.33 8.32 -92.71 -0.77 13.56 16 25 H 0.13 2.84 7.80 -2.39 -0.02 2.82 16 26 H 0.08 1.85 7.81 -2.39 -0.02 1.83 16 27 H 0.02 0.68 6.44 -2.39 -0.02 0.67 16 28 H 0.06 2.24 5.73 -2.38 -0.01 2.23 16 29 H 0.07 1.71 7.08 -2.39 -0.02 1.69 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.99 7.51 -2.39 -0.02 0.97 16 33 H 0.07 0.95 7.52 -2.39 -0.02 0.93 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.05 0.98 6.74 -2.38 -0.02 0.96 16 37 H 0.08 1.47 6.59 -2.39 -0.02 1.46 16 38 H 0.08 1.35 7.64 -2.39 -0.02 1.33 16 Total: -1.00 -71.89 296.55 -0.37 -72.26 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.27 Total: 18.21 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 3.75 Total: 4.24 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -6.38 Total: -109.47 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.04 Total: -29.81 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.89 -0.37 -72.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048374161.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.874 kcal (2) G-P(sol) polarization free energy of solvation -71.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds