Wall clock time and date at job start Sun Mar 29 2020 22:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48506 * 109.46954 * 240.00124 * 3 2 1 5 5 H 1.48497 * 109.47424 * 120.00097 * 3 2 1 6 6 H 1.48498 * 109.47189 * 0.02562 * 3 2 1 7 7 C 1.38813 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 153.45636 * 7 2 1 9 9 N 1.36932 * 119.99828 * 333.46261 * 7 2 1 10 10 C 1.47087 * 120.88135 * 153.44981 * 9 7 2 11 11 C 1.53687 * 108.27609 * 128.75334 * 10 9 7 12 12 N 1.46896 * 109.26021 * 54.08404 * 11 10 9 13 13 C 1.46903 * 111.00239 * 172.61090 * 12 11 10 14 14 C 1.52995 * 109.47548 * 53.21337 * 13 12 11 15 15 H 1.09003 * 110.32881 * 305.63039 * 14 13 12 16 16 C 1.54478 * 110.37547 * 183.38032 * 14 13 12 17 17 C 1.54503 * 104.06458 * 217.19023 * 16 14 13 18 18 C 1.54480 * 104.06401 * 0.02562 * 17 16 14 19 19 O 1.44427 * 110.36999 * 67.99591 * 14 13 12 20 20 C 1.46904 * 111.26698 * 296.75528 * 12 11 10 21 21 C 1.47075 * 120.88398 * 333.72549 * 9 7 2 22 22 H 0.97001 * 119.99813 * 174.23503 * 1 2 3 23 23 H 1.09002 * 109.62735 * 248.52386 * 10 9 7 24 24 H 1.09000 * 109.62716 * 9.10089 * 10 9 7 25 25 H 1.09005 * 109.65090 * 294.07784 * 11 10 9 26 26 H 1.09004 * 109.44289 * 173.96363 * 11 10 9 27 27 H 1.09006 * 109.47087 * 173.21762 * 13 12 11 28 28 H 1.09002 * 109.46473 * 293.20724 * 13 12 11 29 29 H 1.09005 * 110.51061 * 335.83380 * 16 14 13 30 30 H 1.08996 * 110.51171 * 98.40474 * 16 14 13 31 31 H 1.08999 * 110.51304 * 118.64103 * 17 16 14 32 32 H 1.09001 * 110.51410 * 241.21508 * 17 16 14 33 33 H 1.08994 * 110.37892 * 142.80890 * 18 17 16 34 34 H 1.09006 * 110.36913 * 265.04177 * 18 17 16 35 35 H 1.08999 * 109.49381 * 303.13908 * 20 12 11 36 36 H 1.09001 * 109.49492 * 183.06223 * 20 12 11 37 37 H 1.09001 * 109.62863 * 350.89952 * 21 9 7 38 38 H 1.09001 * 109.63459 * 111.28197 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0050 -1.2515 -0.4174 9 7 1.4339 -2.3253 0.5309 10 6 1.8242 -3.6653 0.0665 11 6 2.1703 -4.5196 1.2963 12 7 1.0428 -4.4931 2.2376 13 6 1.2587 -5.4348 3.3442 14 6 2.6175 -5.1591 3.9909 15 1 3.4065 -5.1829 3.2392 16 6 2.9033 -6.1922 5.1034 17 6 3.6233 -5.3747 6.1990 18 6 3.6868 -3.9442 5.6193 19 8 2.6028 -3.8830 4.6672 20 6 0.8016 -3.1346 2.7418 21 6 0.4037 -2.2237 1.5756 22 1 -0.4850 -0.8358 -0.0844 23 1 0.9963 -4.1197 -0.4777 24 1 2.6953 -3.5879 -0.5842 25 1 3.0597 -4.1187 1.7826 26 1 2.3587 -5.5466 0.9832 27 1 0.4706 -5.3094 4.0869 28 1 1.2385 -6.4554 2.9619 29 1 1.9715 -6.6077 5.4872 30 1 3.5494 -6.9866 4.7300 31 1 3.0475 -5.3860 7.1244 32 1 4.6265 -5.7652 6.3697 33 1 3.5406 -3.2076 6.4092 34 1 4.6415 -3.7793 5.1197 35 1 1.7099 -2.7530 3.2081 36 1 -0.0031 -3.1570 3.4768 37 1 0.3351 -1.1928 1.9232 38 1 -0.5588 -2.5389 1.1728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049814637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:31 Heat of formation + Delta-G solvation = -15.727049 kcal Electronic energy + Delta-G solvation = -18416.246831 eV Core-core repulsion = 15680.343597 eV Total energy + Delta-G solvation = -2735.903234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.74220 -37.68015 -34.62931 -32.19025 -31.46554 -30.08643 -29.29458 -26.57857 -24.31327 -22.86885 -22.44152 -21.46849 -20.96576 -18.84338 -17.26529 -16.53698 -15.76363 -15.49085 -14.76841 -14.33041 -14.07883 -13.76525 -13.60919 -13.42406 -13.24390 -12.76967 -11.99614 -11.90073 -11.79030 -11.61433 -11.31921 -11.20553 -10.78730 -10.63248 -10.59118 -10.29850 -10.07800 -10.04214 -9.90681 -9.59335 -9.20887 -8.29638 -7.72247 -6.75887 -5.98155 -3.10332 3.54475 3.58868 3.76578 3.87709 4.47436 4.57040 4.66353 4.70568 4.84509 5.04552 5.18963 5.34843 5.40990 5.49973 5.52157 5.58946 5.68564 5.75465 5.76835 5.89867 5.95782 5.97859 6.11796 6.17671 6.30709 6.53584 6.59557 6.65933 6.85652 6.93203 7.11720 7.34416 7.65060 7.72979 8.08078 8.66666 9.21962 9.95125 10.42710 11.30746 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031607 B = 0.006810 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.666470 B = 4110.667637 C = 4539.037065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.025 4.025 3 Si 1.062 2.938 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.348 4.348 8 H 0.054 0.946 9 N -0.601 5.601 10 C 0.151 3.849 11 C 0.041 3.959 12 N -0.530 5.530 13 C 0.061 3.939 14 C 0.036 3.964 15 H 0.070 0.930 16 C -0.148 4.148 17 C -0.153 4.153 18 C 0.040 3.960 19 O -0.356 6.356 20 C 0.041 3.959 21 C 0.156 3.844 22 H 0.269 0.731 23 H 0.022 0.978 24 H 0.055 0.945 25 H 0.033 0.967 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 -12.206 10.790 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.227 4.227 3 Si 0.892 3.108 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.211 1.211 7 C -0.477 4.477 8 H 0.072 0.928 9 N -0.325 5.325 10 C 0.025 3.975 11 C -0.089 4.089 12 N -0.252 5.252 13 C -0.068 4.068 14 C -0.023 4.023 15 H 0.088 0.912 16 C -0.186 4.186 17 C -0.191 4.191 18 C -0.037 4.037 19 O -0.275 6.275 20 C -0.088 4.088 21 C 0.030 3.970 22 H 0.080 0.920 23 H 0.040 0.960 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 5.366 -10.472 10.522 15.785 hybrid contribution 1.211 -1.726 0.468 2.160 sum 6.577 -12.199 10.989 17.687 Atomic orbital electron populations 1.70764 1.06599 1.30309 1.47909 1.25782 0.96495 1.01319 0.99103 0.83572 0.74848 0.76280 0.76093 1.22079 1.22199 1.21102 1.19953 0.98226 0.88951 1.40572 0.92790 1.44170 1.46469 1.00923 1.40974 1.21042 0.97633 0.86293 0.92577 1.22719 0.91836 0.99013 0.95311 1.62138 1.40315 1.08413 1.14377 1.22399 0.93815 0.97343 0.93255 1.23916 1.00569 0.83375 0.94472 0.91218 1.22947 1.01121 0.98551 0.95990 1.22913 1.01030 0.96019 0.99165 1.23388 0.91380 0.96606 0.92351 1.89315 1.51327 1.34235 1.52649 1.22811 1.00404 0.87806 0.97768 1.21036 0.90713 0.97941 0.87295 0.92002 0.95983 0.92671 0.94883 0.92325 0.90528 0.90049 0.90659 0.90895 0.90912 0.90932 0.89375 0.92662 0.92740 0.92497 0.90413 0.96205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.36 12.44 55.49 0.69 -27.67 16 2 C -0.03 -0.74 4.66 -17.43 -0.08 -0.82 16 3 Si 1.06 26.06 29.99 -169.99 -5.10 20.96 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.35 -10.14 9.52 -15.06 -0.14 -10.28 16 8 H 0.05 1.57 7.95 -52.49 -0.42 1.16 16 9 N -0.60 -16.00 2.89 -171.74 -0.50 -16.49 16 10 C 0.15 3.40 6.72 -3.36 -0.02 3.38 16 11 C 0.04 0.77 4.80 -3.47 -0.02 0.75 16 12 N -0.53 -9.92 4.83 -234.02 -1.13 -11.05 16 13 C 0.06 0.89 5.15 -3.82 -0.02 0.87 16 14 C 0.04 0.50 2.82 -25.96 -0.07 0.43 16 15 H 0.07 1.03 6.22 -51.93 -0.32 0.70 16 16 C -0.15 -1.53 6.63 -25.17 -0.17 -1.70 16 17 C -0.15 -1.50 7.09 -25.17 -0.18 -1.68 16 18 C 0.04 0.49 7.63 37.93 0.29 0.78 16 19 O -0.36 -5.77 8.52 -35.23 -0.30 -6.07 16 20 C 0.04 0.87 4.94 -3.70 -0.02 0.85 16 21 C 0.16 3.95 4.88 -3.61 -0.02 3.93 16 22 H 0.27 8.46 6.75 -40.82 -0.28 8.18 16 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 1.21 7.95 -51.93 -0.41 0.80 16 25 H 0.03 0.66 6.55 -51.93 -0.34 0.32 16 26 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 27 H 0.08 1.11 7.95 -51.93 -0.41 0.69 16 28 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 1.24 5.88 -51.93 -0.31 0.93 16 36 H 0.06 1.13 7.98 -51.93 -0.41 0.72 16 37 H 0.08 2.17 6.41 -51.93 -0.33 1.84 16 38 H 0.02 0.52 7.81 -51.93 -0.41 0.12 16 LS Contribution 289.26 15.07 4.36 4.36 Total: -1.00 -32.14 289.26 -8.65 -40.79 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.22 Total: -1.34 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.45 Total: -3.48 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.94 Total: -55.21 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.30 Total: -6.07 kcal Atomic # 14 Polarization: 26.06 SS G_CDS: -5.10 Total: 20.96 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.14 -8.65 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049814637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.063 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds