Wall clock time and date at job start Sun Mar 29 2020 22:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99860 * 2 1 4 4 H 1.48506 * 109.46954 * 240.00124 * 3 2 1 5 5 H 1.48497 * 109.47424 * 120.00097 * 3 2 1 6 6 H 1.48498 * 109.47189 * 0.02562 * 3 2 1 7 7 C 1.38813 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99936 * 153.45636 * 7 2 1 9 9 N 1.36932 * 119.99828 * 333.46261 * 7 2 1 10 10 C 1.47087 * 120.88135 * 153.44981 * 9 7 2 11 11 C 1.53687 * 108.27609 * 128.75334 * 10 9 7 12 12 N 1.46896 * 109.26021 * 54.08404 * 11 10 9 13 13 C 1.46903 * 111.00239 * 172.61090 * 12 11 10 14 14 C 1.52995 * 109.47548 * 53.21337 * 13 12 11 15 15 H 1.09003 * 110.32881 * 305.63039 * 14 13 12 16 16 C 1.54478 * 110.37547 * 183.38032 * 14 13 12 17 17 C 1.54503 * 104.06458 * 217.19023 * 16 14 13 18 18 C 1.54480 * 104.06401 * 0.02562 * 17 16 14 19 19 O 1.44427 * 110.36999 * 67.99591 * 14 13 12 20 20 C 1.46904 * 111.26698 * 296.75528 * 12 11 10 21 21 C 1.47075 * 120.88398 * 333.72549 * 9 7 2 22 22 H 0.97001 * 119.99813 * 174.23503 * 1 2 3 23 23 H 1.09002 * 109.62735 * 248.52386 * 10 9 7 24 24 H 1.09000 * 109.62716 * 9.10089 * 10 9 7 25 25 H 1.09005 * 109.65090 * 294.07784 * 11 10 9 26 26 H 1.09004 * 109.44289 * 173.96363 * 11 10 9 27 27 H 1.09006 * 109.47087 * 173.21762 * 13 12 11 28 28 H 1.09002 * 109.46473 * 293.20724 * 13 12 11 29 29 H 1.09005 * 110.51061 * 335.83380 * 16 14 13 30 30 H 1.08996 * 110.51171 * 98.40474 * 16 14 13 31 31 H 1.08999 * 110.51304 * 118.64103 * 17 16 14 32 32 H 1.09001 * 110.51410 * 241.21508 * 17 16 14 33 33 H 1.08994 * 110.37892 * 142.80890 * 18 17 16 34 34 H 1.09006 * 110.36913 * 265.04177 * 18 17 16 35 35 H 1.08999 * 109.49381 * 303.13908 * 20 12 11 36 36 H 1.09001 * 109.49492 * 183.06223 * 20 12 11 37 37 H 1.09001 * 109.62863 * 350.89952 * 21 9 7 38 38 H 1.09001 * 109.63459 * 111.28197 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 3.1039 1.6965 1.2124 6 1 1.2852 2.7465 0.0006 7 6 2.0103 -1.2021 0.0005 8 1 3.0050 -1.2515 -0.4174 9 7 1.4339 -2.3253 0.5309 10 6 1.8242 -3.6653 0.0665 11 6 2.1703 -4.5196 1.2963 12 7 1.0428 -4.4931 2.2376 13 6 1.2587 -5.4348 3.3442 14 6 2.6175 -5.1591 3.9909 15 1 3.4065 -5.1829 3.2392 16 6 2.9033 -6.1922 5.1034 17 6 3.6233 -5.3747 6.1990 18 6 3.6868 -3.9442 5.6193 19 8 2.6028 -3.8830 4.6672 20 6 0.8016 -3.1346 2.7418 21 6 0.4037 -2.2237 1.5756 22 1 -0.4850 -0.8358 -0.0844 23 1 0.9963 -4.1197 -0.4777 24 1 2.6953 -3.5879 -0.5842 25 1 3.0597 -4.1187 1.7826 26 1 2.3587 -5.5466 0.9832 27 1 0.4706 -5.3094 4.0869 28 1 1.2385 -6.4554 2.9619 29 1 1.9715 -6.6077 5.4872 30 1 3.5494 -6.9866 4.7300 31 1 3.0475 -5.3860 7.1244 32 1 4.6265 -5.7652 6.3697 33 1 3.5406 -3.2076 6.4092 34 1 4.6415 -3.7793 5.1197 35 1 1.7099 -2.7530 3.2081 36 1 -0.0031 -3.1570 3.4768 37 1 0.3351 -1.1928 1.9232 38 1 -0.5588 -2.5389 1.1728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049814637.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:31 Heat of formation + Delta-G solvation = -38.190045 kcal Electronic energy + Delta-G solvation = -18417.220900 eV Core-core repulsion = 15680.343597 eV Total energy + Delta-G solvation = -2736.877303 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89868 -39.24276 -36.45584 -33.47135 -33.04234 -31.79485 -30.75094 -28.21202 -25.91431 -24.52654 -24.12624 -22.60451 -22.09394 -20.60393 -19.32957 -17.59226 -16.97622 -16.63912 -16.26642 -15.97414 -15.84373 -15.41048 -15.36204 -15.09891 -14.55085 -14.24610 -13.51162 -13.32934 -13.15655 -12.73715 -12.57261 -12.53814 -12.44483 -12.11737 -12.00849 -11.94966 -11.87771 -11.74401 -11.48960 -11.26492 -10.70844 -10.48194 -9.28043 -8.89536 -8.27367 -5.39147 1.55528 1.64179 1.83177 2.64101 2.81943 3.16195 3.19570 3.54606 3.66184 3.77321 3.97898 4.09503 4.17261 4.25916 4.30286 4.35725 4.51943 4.55421 4.61043 4.67838 4.74380 4.78619 4.84586 4.91554 4.92197 4.92746 5.05027 5.12118 5.13680 5.17986 5.39383 5.77762 5.92717 6.13302 6.22671 6.36364 7.02943 7.76183 8.23534 8.97486 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.031607 B = 0.006810 C = 0.006167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.666470 B = 4110.667637 C = 4539.037065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.077 4.077 3 Si 1.115 2.885 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.289 1.289 7 C -0.359 4.359 8 H 0.051 0.949 9 N -0.620 5.620 10 C 0.144 3.856 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.062 3.938 14 C 0.033 3.967 15 H 0.059 0.941 16 C -0.140 4.140 17 C -0.145 4.145 18 C 0.030 3.970 19 O -0.394 6.394 20 C 0.062 3.938 21 C 0.164 3.836 22 H 0.252 0.748 23 H 0.017 0.983 24 H 0.056 0.944 25 H 0.023 0.977 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.470 -13.969 11.986 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.273 4.273 3 Si 0.939 3.061 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.488 4.488 8 H 0.068 0.932 9 N -0.345 5.345 10 C 0.019 3.981 11 C -0.074 4.074 12 N -0.262 5.262 13 C -0.066 4.066 14 C -0.026 4.026 15 H 0.077 0.923 16 C -0.178 4.178 17 C -0.183 4.183 18 C -0.047 4.047 19 O -0.314 6.314 20 C -0.068 4.068 21 C 0.038 3.962 22 H 0.062 0.938 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.041 0.959 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 6.745 -12.290 11.727 18.278 hybrid contribution 0.788 -1.243 0.081 1.473 sum 7.533 -13.533 11.808 19.476 Atomic orbital electron populations 1.70893 1.07584 1.29236 1.50439 1.27233 0.96557 1.04835 0.98657 0.82873 0.73911 0.72086 0.77256 1.19838 1.20939 1.21504 1.20226 0.98114 0.90257 1.40208 0.93167 1.44424 1.46590 1.01951 1.41545 1.21232 0.97333 0.85024 0.94544 1.22525 0.91266 1.00068 0.93492 1.62070 1.40608 1.07339 1.16147 1.22526 0.94626 0.97375 0.92086 1.23923 0.99410 0.83881 0.95412 0.92265 1.22921 1.02177 0.97952 0.94729 1.22892 1.02353 0.93926 0.99131 1.23580 0.90284 0.98792 0.92002 1.89265 1.52648 1.35789 1.53730 1.22425 0.99951 0.88708 0.95679 1.20845 0.89911 0.96994 0.88455 0.93817 0.96468 0.92550 0.95893 0.88485 0.90203 0.87092 0.89611 0.88917 0.89949 0.88977 0.88901 0.92973 0.94195 0.91369 0.93934 0.98043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.08 12.44 21.65 0.27 -59.81 16 2 C -0.08 -4.58 4.66 84.86 0.40 -4.18 16 3 Si 1.11 53.12 29.99 68.60 2.06 55.18 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.36 -21.31 9.52 84.03 0.80 -20.51 16 8 H 0.05 2.97 7.95 -2.91 -0.02 2.94 16 9 N -0.62 -33.77 2.89 -697.25 -2.02 -35.78 16 10 C 0.14 6.48 6.72 86.50 0.58 7.06 16 11 C 0.06 2.01 4.80 86.54 0.42 2.43 16 12 N -0.54 -19.40 4.83 -894.31 -4.32 -23.72 16 13 C 0.06 1.64 5.15 86.30 0.44 2.08 16 14 C 0.03 0.83 2.82 31.10 0.09 0.91 16 15 H 0.06 1.61 6.22 -2.39 -0.01 1.60 16 16 C -0.14 -2.37 6.63 31.61 0.21 -2.16 16 17 C -0.15 -2.37 7.09 31.61 0.22 -2.14 16 18 C 0.03 0.69 7.63 72.49 0.55 1.24 16 19 O -0.39 -12.34 8.52 -148.98 -1.27 -13.61 16 20 C 0.06 2.62 4.94 86.38 0.43 3.05 16 21 C 0.16 8.59 4.88 86.35 0.42 9.01 16 22 H 0.25 16.58 6.75 -92.71 -0.63 15.96 16 23 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.06 2.47 7.95 -2.39 -0.02 2.45 16 25 H 0.02 0.89 6.55 -2.38 -0.02 0.87 16 26 H 0.10 2.78 8.11 -2.39 -0.02 2.77 16 27 H 0.08 2.09 7.95 -2.38 -0.02 2.07 16 28 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 1.30 7.87 -2.38 -0.02 1.28 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.04 1.84 5.88 -2.39 -0.01 1.83 16 36 H 0.07 2.71 7.98 -2.39 -0.02 2.69 16 37 H 0.04 2.49 6.41 -2.39 -0.02 2.47 16 38 H 0.00 0.09 7.81 -2.39 -0.02 0.07 16 Total: -1.00 -71.27 289.26 0.44 -70.83 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.16 Total: 10.13 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.56 Total: -3.22 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.07 Total: -119.31 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -1.27 Total: -13.61 kcal Atomic # 14 Polarization: 53.12 SS G_CDS: 2.06 Total: 55.18 kcal Total: -71.27 0.44 -70.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049814637.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.641 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds