Wall clock time and date at job start Sun Mar 29 2020 22:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48501 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47130 * 299.99781 * 3 2 1 6 6 H 1.48499 * 109.46954 * 59.99759 * 3 2 1 7 7 C 1.37885 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99411 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46987 * 179.97438 * 10 9 7 12 12 N 1.46910 * 109.46900 * 180.02562 * 11 10 9 13 13 C 1.46844 * 110.99537 * 288.22563 * 12 11 10 14 14 C 1.53037 * 109.52010 * 174.15982 * 13 12 11 15 15 C 1.53120 * 109.27989 * 59.17949 * 14 13 12 16 16 C 1.53116 * 109.15890 * 302.35033 * 15 14 13 17 17 C 1.46839 * 110.99756 * 164.01626 * 12 11 10 18 18 H 1.09004 * 109.46375 * 65.82577 * 17 12 11 19 19 C 1.50697 * 109.46685 * 305.85306 * 17 12 11 20 20 N 1.34780 * 119.99933 * 150.94031 * 19 17 12 21 21 O 1.21276 * 120.00053 * 330.94446 * 19 17 12 22 22 H 0.97003 * 119.99617 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47298 * 59.99559 * 9 7 2 24 24 H 1.09003 * 109.46867 * 299.99461 * 9 7 2 25 25 H 1.09001 * 109.47310 * 59.99651 * 10 9 7 26 26 H 1.09007 * 109.46773 * 300.00059 * 10 9 7 27 27 H 1.08998 * 109.47495 * 60.00239 * 11 10 9 28 28 H 1.09003 * 109.47047 * 299.99554 * 11 10 9 29 29 H 1.08999 * 109.46640 * 294.17434 * 13 12 11 30 30 H 1.09005 * 109.46107 * 54.16012 * 13 12 11 31 31 H 1.09003 * 109.50830 * 179.12244 * 14 13 12 32 32 H 1.09004 * 109.50905 * 299.20277 * 14 13 12 33 33 H 1.09002 * 109.51838 * 62.24763 * 15 14 13 34 34 H 1.09000 * 109.52804 * 182.37531 * 15 14 13 35 35 H 1.09006 * 109.50194 * 297.70102 * 16 15 14 36 36 H 1.09007 * 109.50313 * 177.59611 * 16 15 14 37 37 H 0.96994 * 120.00219 * 0.02562 * 20 19 17 38 38 H 0.97000 * 119.99844 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9871 0.0012 12 7 2.4345 -6.1038 0.0018 13 6 3.1024 -6.2258 -1.3003 14 6 4.1891 -7.3002 -1.2189 15 6 3.5516 -8.6353 -0.8242 16 6 2.8217 -8.4682 0.5114 17 6 1.7746 -7.3599 0.3799 18 1 1.0497 -7.6344 -0.3865 19 6 1.0672 -7.1786 1.6981 20 7 -0.0348 -7.9029 1.9767 21 8 1.4893 -6.3808 2.5081 22 1 -0.4850 0.8401 -0.0004 23 1 0.6244 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8904 25 1 2.8717 -3.6045 0.8905 26 1 2.8717 -3.6045 -0.8895 27 1 0.8530 -5.0452 -0.8886 28 1 0.8536 -5.0446 0.8915 29 1 2.3712 -6.5055 -2.0587 30 1 3.5553 -5.2708 -1.5670 31 1 4.6742 -7.4015 -2.1897 32 1 4.9285 -7.0142 -0.4708 33 1 2.8408 -8.9405 -1.5921 34 1 4.3277 -9.3941 -0.7239 35 1 3.5392 -8.2009 1.2873 36 1 2.3298 -9.4041 0.7768 37 1 -0.3722 -8.5411 1.3290 38 1 -0.4903 -7.7859 2.8251 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049856490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:10 Heat of formation + Delta-G solvation = -56.418800 kcal Electronic energy + Delta-G solvation = -17695.096560 eV Core-core repulsion = 14957.428799 eV Total energy + Delta-G solvation = -2737.667761 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.20358 -37.79531 -34.75832 -33.59210 -32.88908 -31.10644 -30.60701 -26.70404 -24.48322 -23.89081 -22.07032 -20.65689 -19.79561 -19.61372 -17.45976 -16.77197 -16.22100 -15.37852 -15.03412 -14.64191 -14.41408 -14.24061 -14.10463 -13.24613 -13.18402 -13.05082 -12.57619 -12.18454 -11.66338 -11.39036 -11.32808 -10.96465 -10.87556 -10.64089 -10.58768 -10.46120 -10.28294 -9.65297 -9.62359 -9.40637 -9.21715 -8.95264 -8.25830 -8.02641 -5.91265 -3.92413 2.71721 3.37215 3.40460 3.44153 3.49485 4.10558 4.54534 4.67906 4.76377 4.86423 5.06631 5.15169 5.21230 5.44625 5.48304 5.59243 5.67814 5.74161 5.81007 5.89257 6.03096 6.09503 6.16584 6.32451 6.44605 6.75079 6.83997 6.88241 7.17972 7.29346 7.43773 7.47010 7.79537 7.96020 8.10396 8.36041 8.54436 9.15010 9.70918 11.20502 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.005342 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.846006 B = 5240.609427 C = 5863.772805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.098 4.098 11 C 0.052 3.948 12 N -0.516 5.516 13 C 0.055 3.945 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.105 4.105 17 C 0.070 3.930 18 H 0.053 0.947 19 C 0.517 3.483 20 N -0.861 5.861 21 O -0.511 6.511 22 H 0.258 0.742 23 H 0.012 0.988 24 H 0.015 0.985 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.025 0.975 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.397 0.603 38 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.487 -20.871 -1.909 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.552 4.552 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.136 4.136 11 C -0.074 4.074 12 N -0.242 5.242 13 C -0.073 4.073 14 C -0.157 4.157 15 C -0.155 4.155 16 C -0.143 4.143 17 C -0.043 4.043 18 H 0.071 0.929 19 C 0.301 3.699 20 N -0.427 5.427 21 O -0.383 6.383 22 H 0.068 0.932 23 H 0.030 0.970 24 H 0.033 0.967 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.225 0.775 38 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 3.138 -20.069 -1.149 20.345 hybrid contribution -0.763 0.498 -0.597 1.090 sum 2.375 -19.571 -1.747 19.791 Atomic orbital electron populations 1.69986 1.06067 1.26300 1.51434 1.25032 0.94837 0.99222 0.95508 0.86542 0.80188 0.83858 0.77467 1.19709 1.21118 1.21055 1.21305 0.93105 0.91020 1.49783 0.92605 1.19074 0.94091 0.91491 0.96923 1.21565 0.99027 0.92285 1.00737 1.22410 0.93754 0.91162 1.00110 1.61806 1.31072 1.01876 1.29407 1.22163 0.96028 1.00159 0.88928 1.21627 0.98243 0.94162 1.01658 1.21559 0.99597 0.97836 0.96505 1.21527 0.97744 0.95918 0.99147 1.21570 0.95685 0.93188 0.93831 0.92888 1.20528 0.80244 0.80013 0.89134 1.43927 1.30700 1.44948 1.23080 1.90807 1.64671 1.33954 1.48897 0.93201 0.97006 0.96655 0.92369 0.93671 0.95633 0.90740 0.95185 0.89460 0.91546 0.90817 0.92225 0.91549 0.90260 0.91528 0.77481 0.76875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.29 55.43 0.74 -27.31 16 2 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.50 29.54 -169.99 -5.02 17.48 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.51 -15.35 9.11 -34.44 -0.31 -15.66 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.10 -2.24 5.20 -26.73 -0.14 -2.38 16 11 C 0.05 1.02 4.60 -3.82 -0.02 1.00 16 12 N -0.52 -8.36 4.21 -228.08 -0.96 -9.32 16 13 C 0.05 0.76 5.30 -3.84 -0.02 0.74 16 14 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 15 C -0.12 -1.07 6.00 -26.61 -0.16 -1.23 16 16 C -0.11 -1.10 5.35 -26.65 -0.14 -1.24 16 17 C 0.07 0.90 2.23 -68.88 -0.15 0.75 16 18 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 19 C 0.52 7.45 5.96 -10.99 -0.07 7.39 16 20 N -0.86 -8.20 8.87 31.22 0.28 -7.92 16 21 O -0.51 -10.03 16.22 5.56 0.09 -9.94 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.04 0.98 6.65 -51.93 -0.35 0.64 16 27 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 28 H 0.07 1.57 5.68 -51.93 -0.30 1.27 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 1.31 6.50 -51.93 -0.34 0.97 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.40 2.41 8.83 -40.82 -0.36 2.05 16 38 H 0.40 3.48 8.93 -40.82 -0.36 3.12 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -35.12 304.00 -8.02 -43.14 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.31 Total: -0.60 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.41 Total: -10.11 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.05 Total: -44.55 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.12 -8.02 -43.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.275 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds