Wall clock time and date at job start Sun Mar 29 2020 22:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00395 * 2 1 4 4 H 1.48501 * 109.47138 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47130 * 299.99781 * 3 2 1 6 6 H 1.48499 * 109.46954 * 59.99759 * 3 2 1 7 7 C 1.37885 * 119.99393 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99411 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46987 * 179.97438 * 10 9 7 12 12 N 1.46910 * 109.46900 * 180.02562 * 11 10 9 13 13 C 1.46844 * 110.99537 * 288.22563 * 12 11 10 14 14 C 1.53037 * 109.52010 * 174.15982 * 13 12 11 15 15 C 1.53120 * 109.27989 * 59.17949 * 14 13 12 16 16 C 1.53116 * 109.15890 * 302.35033 * 15 14 13 17 17 C 1.46839 * 110.99756 * 164.01626 * 12 11 10 18 18 H 1.09004 * 109.46375 * 65.82577 * 17 12 11 19 19 C 1.50697 * 109.46685 * 305.85306 * 17 12 11 20 20 N 1.34780 * 119.99933 * 150.94031 * 19 17 12 21 21 O 1.21276 * 120.00053 * 330.94446 * 19 17 12 22 22 H 0.97003 * 119.99617 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47298 * 59.99559 * 9 7 2 24 24 H 1.09003 * 109.46867 * 299.99461 * 9 7 2 25 25 H 1.09001 * 109.47310 * 59.99651 * 10 9 7 26 26 H 1.09007 * 109.46773 * 300.00059 * 10 9 7 27 27 H 1.08998 * 109.47495 * 60.00239 * 11 10 9 28 28 H 1.09003 * 109.47047 * 299.99554 * 11 10 9 29 29 H 1.08999 * 109.46640 * 294.17434 * 13 12 11 30 30 H 1.09005 * 109.46107 * 54.16012 * 13 12 11 31 31 H 1.09003 * 109.50830 * 179.12244 * 14 13 12 32 32 H 1.09004 * 109.50905 * 299.20277 * 14 13 12 33 33 H 1.09002 * 109.51838 * 62.24763 * 15 14 13 34 34 H 1.09000 * 109.52804 * 182.37531 * 15 14 13 35 35 H 1.09006 * 109.50194 * 297.70102 * 16 15 14 36 36 H 1.09007 * 109.50313 * 177.59611 * 16 15 14 37 37 H 0.96994 * 120.00219 * 0.02562 * 20 19 17 38 38 H 0.97000 * 119.99844 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4799 -4.9871 0.0012 12 7 2.4345 -6.1038 0.0018 13 6 3.1024 -6.2258 -1.3003 14 6 4.1891 -7.3002 -1.2189 15 6 3.5516 -8.6353 -0.8242 16 6 2.8217 -8.4682 0.5114 17 6 1.7746 -7.3599 0.3799 18 1 1.0497 -7.6344 -0.3865 19 6 1.0672 -7.1786 1.6981 20 7 -0.0348 -7.9029 1.9767 21 8 1.4893 -6.3808 2.5081 22 1 -0.4850 0.8401 -0.0004 23 1 0.6244 -2.5571 -0.8896 24 1 0.6239 -2.5567 0.8904 25 1 2.8717 -3.6045 0.8905 26 1 2.8717 -3.6045 -0.8895 27 1 0.8530 -5.0452 -0.8886 28 1 0.8536 -5.0446 0.8915 29 1 2.3712 -6.5055 -2.0587 30 1 3.5553 -5.2708 -1.5670 31 1 4.6742 -7.4015 -2.1897 32 1 4.9285 -7.0142 -0.4708 33 1 2.8408 -8.9405 -1.5921 34 1 4.3277 -9.3941 -0.7239 35 1 3.5392 -8.2009 1.2873 36 1 2.3298 -9.4041 0.7768 37 1 -0.3722 -8.5411 1.3290 38 1 -0.4903 -7.7859 2.8251 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049856490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:10 Heat of formation + Delta-G solvation = -83.721650 kcal Electronic energy + Delta-G solvation = -17696.280500 eV Core-core repulsion = 14957.428799 eV Total energy + Delta-G solvation = -2738.851701 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.32360 -38.93321 -36.41013 -34.86183 -34.53266 -32.60354 -31.87116 -28.51519 -25.93443 -24.99979 -23.75803 -21.66876 -21.60263 -20.59651 -18.63090 -18.31242 -17.82836 -16.68120 -16.41563 -16.29348 -15.77169 -15.46773 -15.14604 -14.69507 -14.49334 -14.22395 -14.02310 -13.73325 -13.36246 -13.14278 -12.70468 -12.51650 -12.37076 -12.30996 -11.86098 -11.66962 -11.57225 -11.40686 -11.30907 -10.99528 -10.70603 -10.62718 -10.57206 -9.24996 -8.21983 -6.33417 1.37868 1.39478 1.53237 1.61604 2.39294 2.44586 2.94347 3.10649 3.81530 3.87271 3.98084 4.12271 4.14277 4.22829 4.35569 4.41725 4.56482 4.66769 4.77777 4.84433 4.94612 4.95851 5.04464 5.11525 5.18470 5.21692 5.31764 5.47643 5.50692 5.71066 5.82262 5.89564 6.01754 6.15820 6.25110 6.52263 6.82410 7.35626 7.38816 8.90631 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.005342 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.846006 B = 5240.609427 C = 5863.772805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.082 4.082 11 C 0.068 3.932 12 N -0.534 5.534 13 C 0.051 3.949 14 C -0.115 4.115 15 C -0.111 4.111 16 C -0.101 4.101 17 C 0.067 3.933 18 H 0.080 0.920 19 C 0.511 3.489 20 N -0.837 5.837 21 O -0.575 6.575 22 H 0.264 0.736 23 H -0.006 1.006 24 H -0.018 1.018 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.418 0.582 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.137 -22.435 -3.100 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.060 4.060 12 N -0.260 5.260 13 C -0.076 4.076 14 C -0.153 4.153 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.045 4.045 18 H 0.098 0.902 19 C 0.296 3.704 20 N -0.402 5.402 21 O -0.453 6.453 22 H 0.073 0.927 23 H 0.013 0.987 24 H 0.000 1.000 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.249 0.751 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 3.757 -21.703 -2.365 22.152 hybrid contribution -1.034 0.924 -0.220 1.404 sum 2.723 -20.779 -2.586 21.115 Atomic orbital electron populations 1.70114 1.07863 1.27776 1.51717 1.26030 0.95845 1.03497 0.94536 0.85336 0.78969 0.78390 0.77974 1.18688 1.19799 1.20307 1.21691 0.93455 0.92354 1.50595 0.92428 1.18946 0.94326 0.93271 0.94359 1.21294 0.97863 0.92778 1.00102 1.22016 0.93640 0.91013 0.99305 1.61662 1.30703 1.02493 1.31131 1.22256 0.96930 1.00438 0.87990 1.21624 0.97007 0.94206 1.02487 1.21566 1.00340 0.97055 0.95920 1.21566 0.96818 0.96000 0.99503 1.21757 0.96958 0.92283 0.93465 0.90210 1.20932 0.80885 0.79464 0.89162 1.43715 1.28915 1.43860 1.23716 1.90781 1.66752 1.36941 1.50846 0.92687 0.98746 0.99973 0.94335 0.92706 0.95092 0.92795 0.93860 0.91526 0.89379 0.92368 0.90372 0.89421 0.92546 0.88324 0.75059 0.76198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.47 13.29 21.45 0.28 -59.18 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 46.44 29.54 68.60 2.03 48.47 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.54 -33.32 9.11 25.60 0.23 -33.08 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.66 4.97 29.85 0.15 1.81 16 10 C -0.08 -3.92 5.20 30.59 0.16 -3.77 16 11 C 0.07 2.71 4.60 86.30 0.40 3.11 16 12 N -0.53 -17.20 4.21 -875.51 -3.69 -20.89 16 13 C 0.05 1.35 5.30 86.33 0.46 1.80 16 14 C -0.12 -2.25 6.09 30.65 0.19 -2.07 16 15 C -0.11 -1.62 6.00 30.67 0.18 -1.43 16 16 C -0.10 -1.83 5.35 30.64 0.16 -1.67 16 17 C 0.07 1.63 2.23 44.19 0.10 1.73 16 18 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 19 C 0.51 14.51 5.96 87.66 0.52 15.03 16 20 N -0.84 -14.61 8.87 -173.54 -1.54 -16.15 16 21 O -0.58 -23.45 16.22 -3.02 -0.05 -23.50 16 22 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 23 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H -0.02 -1.16 8.14 -2.39 -0.02 -1.17 16 25 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 2.47 6.65 -2.38 -0.02 2.45 16 27 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 28 H 0.05 2.37 5.68 -2.39 -0.01 2.36 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 2.00 6.50 -2.38 -0.02 1.98 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.42 3.86 8.83 -92.71 -0.82 3.04 16 38 H 0.41 6.61 8.93 -92.71 -0.83 5.78 16 Total: -1.00 -79.40 304.00 -0.55 -79.95 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -0.60 Total: 9.48 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 3.01 Total: -18.18 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -4.94 Total: -96.22 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -79.40 -0.55 -79.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.772 kcal (2) G-P(sol) polarization free energy of solvation -79.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds