Wall clock time and date at job start Sun Mar 29 2020 22:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99632 * 2 1 4 4 H 1.48503 * 109.46904 * 269.99931 * 3 2 1 5 5 H 1.48500 * 109.47196 * 30.00070 * 3 2 1 6 6 H 1.48499 * 109.47291 * 150.00459 * 3 2 1 7 7 C 1.37872 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99774 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99893 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47164 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47343 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47357 * 180.02562 * 11 10 9 13 13 C 1.46852 * 110.99752 * 51.78410 * 12 11 10 14 14 C 1.53039 * 109.52307 * 185.84082 * 13 12 11 15 15 C 1.53122 * 109.27866 * 300.82317 * 14 13 12 16 16 C 1.53113 * 109.15260 * 57.65947 * 15 14 13 17 17 C 1.46841 * 111.00507 * 175.99379 * 12 11 10 18 18 H 1.08996 * 109.45978 * 294.16818 * 17 12 11 19 19 C 1.50698 * 109.45979 * 54.14559 * 17 12 11 20 20 N 1.34786 * 119.99987 * 208.87889 * 19 17 12 21 21 O 1.21281 * 120.00249 * 28.87540 * 19 17 12 22 22 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47023 * 60.00477 * 9 7 2 24 24 H 1.09003 * 109.47557 * 299.99967 * 9 7 2 25 25 H 1.09007 * 109.46913 * 60.00178 * 10 9 7 26 26 H 1.09001 * 109.47010 * 300.00803 * 10 9 7 27 27 H 1.08997 * 109.46955 * 60.00277 * 11 10 9 28 28 H 1.08999 * 109.47009 * 300.00092 * 11 10 9 29 29 H 1.09008 * 109.46426 * 305.85426 * 13 12 11 30 30 H 1.08995 * 109.46470 * 65.82753 * 13 12 11 31 31 H 1.09003 * 109.50149 * 60.76503 * 14 13 12 32 32 H 1.09002 * 109.50453 * 180.88030 * 14 13 12 33 33 H 1.08997 * 109.52045 * 177.55786 * 15 14 13 34 34 H 1.09003 * 109.51717 * 297.74684 * 15 14 13 35 35 H 1.09000 * 109.49514 * 182.39584 * 16 15 14 36 36 H 1.08996 * 109.51332 * 62.27728 * 16 15 14 37 37 H 0.97002 * 119.99575 * 179.97438 * 20 19 17 38 38 H 0.96998 * 119.99879 * 359.71651 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5516 -2.6363 0.0001 12 7 6.0414 -4.0212 -0.0004 13 6 5.4173 -4.7997 -1.0779 14 6 5.8377 -6.2664 -0.9588 15 6 7.3630 -6.3641 -1.0506 16 6 7.9887 -5.5062 0.0525 17 6 7.5061 -4.0615 -0.0961 18 1 7.8175 -3.6724 -1.0655 19 6 8.1043 -3.2171 0.9995 20 7 9.2998 -2.6225 0.8155 21 8 7.5099 -3.0725 2.0467 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6795 0.8895 24 1 3.8746 -0.6806 -0.8905 25 1 3.6580 -3.1504 -0.8897 26 1 3.6586 -3.1500 0.8903 27 1 5.9149 -2.1224 0.8901 28 1 5.9150 -2.1225 -0.8899 29 1 4.3327 -4.7252 -0.9985 30 1 5.7385 -4.4071 -2.0426 31 1 5.5046 -6.6637 0.0001 32 1 5.3868 -6.8411 -1.7678 33 1 7.6698 -7.4022 -0.9228 34 1 7.6931 -6.0030 -2.0247 35 1 9.0748 -5.5377 -0.0341 36 1 7.6894 -5.8914 1.0272 37 1 9.6846 -2.0787 1.5206 38 1 9.7771 -2.7415 -0.0205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049856492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:12 Heat of formation + Delta-G solvation = -51.527780 kcal Electronic energy + Delta-G solvation = -17743.766408 eV Core-core repulsion = 15006.310738 eV Total energy + Delta-G solvation = -2737.455670 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.27743 -37.91243 -34.93135 -33.68449 -32.87470 -31.28954 -30.75790 -27.07832 -24.57815 -24.04828 -21.81921 -20.76792 -19.79110 -19.61329 -17.54010 -16.86459 -16.62994 -15.51742 -14.98292 -14.78125 -14.47697 -14.21771 -14.12167 -13.41123 -13.24331 -13.09127 -12.71875 -12.43967 -11.75835 -11.69702 -11.43605 -11.11954 -10.91343 -10.80602 -10.64238 -10.37442 -9.90368 -9.74232 -9.71501 -9.52549 -9.46836 -9.08517 -8.47673 -8.09092 -5.98335 -3.95489 2.61505 3.32275 3.34383 3.41834 3.47539 4.04254 4.50978 4.62919 4.71879 4.83613 5.00920 5.11960 5.17689 5.35802 5.45846 5.55012 5.63126 5.70518 5.76701 5.82776 5.94716 6.02095 6.13382 6.26267 6.31125 6.60366 6.63389 6.74090 6.95857 7.10734 7.29990 7.35561 7.42467 7.53970 7.86692 8.26288 8.61332 9.07245 9.64737 11.15302 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.005849 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.850526 B = 4786.035223 C = 5518.932406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.047 3.953 12 N -0.515 5.515 13 C 0.049 3.951 14 C -0.119 4.119 15 C -0.118 4.118 16 C -0.105 4.105 17 C 0.070 3.930 18 H 0.055 0.945 19 C 0.518 3.482 20 N -0.861 5.861 21 O -0.514 6.514 22 H 0.262 0.738 23 H 0.016 0.984 24 H 0.007 0.993 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.022 0.978 29 H 0.094 0.906 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.400 0.600 38 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.688 -10.362 -3.726 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.080 4.080 12 N -0.241 5.241 13 C -0.078 4.078 14 C -0.157 4.157 15 C -0.155 4.155 16 C -0.143 4.143 17 C -0.043 4.043 18 H 0.072 0.928 19 C 0.302 3.698 20 N -0.426 5.426 21 O -0.388 6.388 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.026 0.974 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.040 0.960 29 H 0.112 0.888 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.231 0.769 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 19.844 -10.477 -2.654 22.597 hybrid contribution 1.063 1.600 -0.980 2.156 sum 20.907 -8.877 -3.634 23.003 Atomic orbital electron populations 1.69918 1.06266 1.26770 1.51524 1.25025 0.94718 0.99115 0.94679 0.86785 0.80487 0.83718 0.78360 1.20424 1.21382 1.19006 1.21146 0.89482 0.94453 1.50338 0.90994 1.19545 0.97143 0.92315 0.96065 1.21544 0.90766 0.99779 1.01584 1.22470 0.98299 0.86821 1.00408 1.61795 1.02077 1.14070 1.46117 1.22259 1.01110 0.92921 0.91517 1.21636 0.95143 0.96258 1.02683 1.21567 0.96244 0.99621 0.98109 1.21525 0.99302 0.92463 1.01015 1.21580 0.90938 0.96163 0.95584 0.92771 1.20565 0.80802 0.79387 0.89052 1.43928 1.22441 1.54651 1.21552 1.90779 1.60071 1.60168 1.27736 0.92825 0.96555 0.97435 0.92707 0.91727 0.89947 0.95957 0.88763 0.95109 0.90816 0.91437 0.91516 0.92203 0.91522 0.90248 0.76898 0.77404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.72 13.96 55.43 0.77 -27.95 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.54 27.47 -169.99 -4.67 17.88 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 7 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.11 4.65 -26.73 -0.12 -2.23 16 11 C 0.05 0.86 4.58 -3.83 -0.02 0.84 16 12 N -0.52 -8.02 4.36 -228.08 -0.99 -9.02 16 13 C 0.05 0.67 5.03 -3.83 -0.02 0.65 16 14 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 15 C -0.12 -1.05 6.00 -26.61 -0.16 -1.21 16 16 C -0.10 -1.05 5.35 -26.65 -0.14 -1.19 16 17 C 0.07 0.86 2.23 -68.88 -0.15 0.71 16 18 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 19 C 0.52 7.00 6.27 -10.98 -0.07 6.93 16 20 N -0.86 -7.46 8.87 31.22 0.28 -7.18 16 21 O -0.51 -9.50 15.98 5.56 0.09 -9.41 16 22 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 24 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 25 H 0.05 1.12 6.19 -51.93 -0.32 0.80 16 26 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.08 1.67 6.10 -51.93 -0.32 1.35 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 1.42 5.84 -51.92 -0.30 1.12 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 3.10 8.93 -40.82 -0.36 2.74 16 38 H 0.40 2.13 8.83 -40.82 -0.36 1.77 16 LS Contribution 299.15 15.07 4.51 4.51 Total: -1.00 -34.97 299.15 -7.65 -42.62 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.25 Total: -0.27 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.39 Total: -11.18 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.06 Total: -44.15 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.88 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.97 -7.65 -42.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.903 kcal (2) G-P(sol) polarization free energy of solvation -34.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds