Wall clock time and date at job start Sun Mar 29 2020 22:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99632 * 2 1 4 4 H 1.48503 * 109.46904 * 269.99931 * 3 2 1 5 5 H 1.48500 * 109.47196 * 30.00070 * 3 2 1 6 6 H 1.48499 * 109.47291 * 150.00459 * 3 2 1 7 7 C 1.37872 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99774 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99893 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47164 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47343 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47357 * 180.02562 * 11 10 9 13 13 C 1.46852 * 110.99752 * 51.78410 * 12 11 10 14 14 C 1.53039 * 109.52307 * 185.84082 * 13 12 11 15 15 C 1.53122 * 109.27866 * 300.82317 * 14 13 12 16 16 C 1.53113 * 109.15260 * 57.65947 * 15 14 13 17 17 C 1.46841 * 111.00507 * 175.99379 * 12 11 10 18 18 H 1.08996 * 109.45978 * 294.16818 * 17 12 11 19 19 C 1.50698 * 109.45979 * 54.14559 * 17 12 11 20 20 N 1.34786 * 119.99987 * 208.87889 * 19 17 12 21 21 O 1.21281 * 120.00249 * 28.87540 * 19 17 12 22 22 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47023 * 60.00477 * 9 7 2 24 24 H 1.09003 * 109.47557 * 299.99967 * 9 7 2 25 25 H 1.09007 * 109.46913 * 60.00178 * 10 9 7 26 26 H 1.09001 * 109.47010 * 300.00803 * 10 9 7 27 27 H 1.08997 * 109.46955 * 60.00277 * 11 10 9 28 28 H 1.08999 * 109.47009 * 300.00092 * 11 10 9 29 29 H 1.09008 * 109.46426 * 305.85426 * 13 12 11 30 30 H 1.08995 * 109.46470 * 65.82753 * 13 12 11 31 31 H 1.09003 * 109.50149 * 60.76503 * 14 13 12 32 32 H 1.09002 * 109.50453 * 180.88030 * 14 13 12 33 33 H 1.08997 * 109.52045 * 177.55786 * 15 14 13 34 34 H 1.09003 * 109.51717 * 297.74684 * 15 14 13 35 35 H 1.09000 * 109.49514 * 182.39584 * 16 15 14 36 36 H 1.08996 * 109.51332 * 62.27728 * 16 15 14 37 37 H 0.97002 * 119.99575 * 179.97438 * 20 19 17 38 38 H 0.96998 * 119.99879 * 359.71651 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 6 4.0217 -2.6364 0.0001 11 6 5.5516 -2.6363 0.0001 12 7 6.0414 -4.0212 -0.0004 13 6 5.4173 -4.7997 -1.0779 14 6 5.8377 -6.2664 -0.9588 15 6 7.3630 -6.3641 -1.0506 16 6 7.9887 -5.5062 0.0525 17 6 7.5061 -4.0615 -0.0961 18 1 7.8175 -3.6724 -1.0655 19 6 8.1043 -3.2171 0.9995 20 7 9.2998 -2.6225 0.8155 21 8 7.5099 -3.0725 2.0467 22 1 -0.4850 0.8400 0.0004 23 1 3.8751 -0.6795 0.8895 24 1 3.8746 -0.6806 -0.8905 25 1 3.6580 -3.1504 -0.8897 26 1 3.6586 -3.1500 0.8903 27 1 5.9149 -2.1224 0.8901 28 1 5.9150 -2.1225 -0.8899 29 1 4.3327 -4.7252 -0.9985 30 1 5.7385 -4.4071 -2.0426 31 1 5.5046 -6.6637 0.0001 32 1 5.3868 -6.8411 -1.7678 33 1 7.6698 -7.4022 -0.9228 34 1 7.6931 -6.0030 -2.0247 35 1 9.0748 -5.5377 -0.0341 36 1 7.6894 -5.8914 1.0272 37 1 9.6846 -2.0787 1.5206 38 1 9.7771 -2.7415 -0.0205 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049856492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:12 Heat of formation + Delta-G solvation = -79.349272 kcal Electronic energy + Delta-G solvation = -17744.972838 eV Core-core repulsion = 15006.310738 eV Total energy + Delta-G solvation = -2738.662101 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.31944 -38.99081 -36.45791 -34.84896 -34.53156 -32.85639 -31.88925 -28.79126 -25.92653 -25.04467 -23.51356 -21.72439 -21.41379 -20.59968 -18.93856 -18.41197 -17.81638 -16.70533 -16.31588 -16.09532 -15.96890 -15.52472 -15.15064 -14.81525 -14.70336 -14.23979 -14.06199 -13.87042 -13.37465 -13.36356 -12.74412 -12.48287 -12.35788 -11.86574 -11.84777 -11.72046 -11.63236 -11.47791 -11.41537 -11.00533 -10.78094 -10.69801 -10.60910 -9.23503 -8.31561 -6.35812 1.31755 1.35452 1.47862 1.60924 2.34339 2.43899 2.94917 3.03147 3.81612 3.87354 3.98151 4.12156 4.13795 4.19936 4.34925 4.36847 4.56657 4.59028 4.68754 4.84334 4.90154 4.94000 5.00853 5.02860 5.11329 5.21301 5.31097 5.44406 5.48878 5.56129 5.63064 5.89867 6.03868 6.13833 6.27512 6.52611 6.71335 7.28638 7.38957 8.85461 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.005849 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.850526 B = 4786.035223 C = 5518.932406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.952 3.048 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.254 1.254 7 C -0.533 4.533 8 H 0.031 0.969 9 C -0.008 4.008 10 C -0.089 4.089 11 C 0.062 3.938 12 N -0.535 5.535 13 C 0.047 3.953 14 C -0.117 4.117 15 C -0.111 4.111 16 C -0.101 4.101 17 C 0.067 3.933 18 H 0.082 0.918 19 C 0.513 3.487 20 N -0.836 5.836 21 O -0.575 6.575 22 H 0.267 0.733 23 H 0.010 0.990 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.407 0.593 38 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.921 -10.134 -5.307 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.775 3.225 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.046 4.046 10 C -0.127 4.127 11 C -0.065 4.065 12 N -0.261 5.261 13 C -0.080 4.080 14 C -0.155 4.155 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.045 4.045 18 H 0.099 0.901 19 C 0.298 3.702 20 N -0.401 5.401 21 O -0.453 6.453 22 H 0.076 0.924 23 H 0.029 0.971 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.239 0.761 38 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 23.139 -10.265 -4.277 25.672 hybrid contribution 0.027 1.444 -0.492 1.525 sum 23.166 -8.821 -4.769 25.243 Atomic orbital electron populations 1.70066 1.08237 1.28222 1.52599 1.26026 0.95667 1.03536 0.94003 0.85633 0.79265 0.78176 0.79438 1.18492 1.20642 1.17752 1.21462 0.91947 0.93204 1.50509 0.95055 1.19467 0.94115 0.94863 0.96134 1.21353 0.93480 0.97106 1.00720 1.22104 0.95483 0.88918 1.00000 1.61675 1.04579 1.12278 1.47550 1.22288 0.99609 0.94636 0.91451 1.21633 0.97170 0.94165 1.02513 1.21564 0.94170 1.00674 0.98483 1.21559 1.01276 0.90754 1.00312 1.21761 0.88630 0.97824 0.96268 0.90060 1.20875 0.81553 0.79336 0.88461 1.43709 1.20882 1.52912 1.22578 1.90760 1.62008 1.62549 1.30025 0.92396 0.97123 0.96084 0.92216 0.94077 0.91964 0.94616 0.91362 0.93862 0.92447 0.89706 0.89567 0.90385 0.88265 0.92545 0.76119 0.75058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.72 13.96 21.45 0.30 -61.42 16 2 C 0.00 0.27 5.47 84.65 0.46 0.73 16 3 Si 0.95 46.27 27.47 68.60 1.88 48.15 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 7 C -0.53 -32.68 9.66 25.60 0.25 -32.43 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.07 16 9 C -0.01 -0.40 4.04 29.85 0.12 -0.28 16 10 C -0.09 -3.88 4.65 30.59 0.14 -3.74 16 11 C 0.06 2.27 4.58 86.30 0.40 2.66 16 12 N -0.53 -16.28 4.36 -875.52 -3.82 -20.10 16 13 C 0.05 1.24 5.03 86.33 0.43 1.68 16 14 C -0.12 -2.32 6.09 30.65 0.19 -2.13 16 15 C -0.11 -1.59 6.00 30.67 0.18 -1.41 16 16 C -0.10 -1.72 5.35 30.64 0.16 -1.55 16 17 C 0.07 1.49 2.23 44.19 0.10 1.59 16 18 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 19 C 0.51 13.05 6.27 87.66 0.55 13.60 16 20 N -0.84 -12.16 8.87 -173.52 -1.54 -13.70 16 21 O -0.58 -21.39 15.98 -3.03 -0.05 -21.44 16 22 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 23 H 0.01 0.54 7.20 -2.39 -0.02 0.53 16 24 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 25 H 0.06 2.51 6.19 -2.38 -0.01 2.50 16 26 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 2.53 6.10 -2.39 -0.01 2.52 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 2.11 5.84 -2.38 -0.01 2.09 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.41 5.35 8.93 -92.71 -0.83 4.53 16 38 H 0.42 2.81 8.83 -92.71 -0.82 1.99 16 Total: -1.00 -79.03 299.15 -0.89 -79.91 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -0.65 Total: 9.88 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 2.99 Total: -21.29 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -5.06 Total: -95.22 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.15 kcal Total: -79.03 -0.89 -79.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049856492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.564 kcal (2) G-P(sol) polarization free energy of solvation -79.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds