Wall clock time and date at job start Sun Mar 29 2020 22:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00046 * 2 1 4 4 N 1.34776 * 119.99957 * 180.02562 * 2 1 3 5 5 C 1.46493 * 119.99976 * 184.12417 * 4 2 1 6 6 C 1.46502 * 119.99576 * 4.12211 * 4 2 1 7 7 C 1.50699 * 109.47254 * 90.00530 * 6 4 2 8 8 O 1.21292 * 120.00054 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99978 * 179.97438 * 7 6 4 10 10 C 1.37091 * 119.99917 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99926 * 225.61311 * 10 9 7 12 12 C 1.38945 * 120.00050 * 45.60482 * 10 9 7 13 13 N 1.31411 * 120.00045 * 20.10185 * 12 10 9 14 14 Si 1.86809 * 120.00315 * 200.09873 * 12 10 9 15 15 H 1.48495 * 109.47006 * 270.00683 * 14 12 10 16 16 H 1.48505 * 109.46660 * 30.00180 * 14 12 10 17 17 H 1.48499 * 109.47146 * 150.00226 * 14 12 10 18 18 C 1.46497 * 119.99753 * 359.97438 * 9 7 6 19 19 C 1.53003 * 117.49402 * 183.29407 * 18 9 7 20 20 C 1.52996 * 117.49807 * 114.67223 * 18 9 7 21 21 H 1.09007 * 109.47053 * 264.64309 * 1 2 3 22 22 H 1.09002 * 109.47005 * 24.63377 * 1 2 3 23 23 H 1.08994 * 109.47251 * 144.64133 * 1 2 3 24 24 H 1.09005 * 109.47278 * 275.85324 * 5 4 2 25 25 H 1.08993 * 109.47352 * 35.85280 * 5 4 2 26 26 H 1.09005 * 109.47163 * 155.85483 * 5 4 2 27 27 H 1.08998 * 109.47309 * 329.99536 * 6 4 2 28 28 H 1.09011 * 109.46666 * 209.99992 * 6 4 2 29 29 H 0.96997 * 120.00263 * 4.49502 * 13 12 10 30 30 H 1.09000 * 115.55097 * 328.99813 * 18 9 7 31 31 H 1.08999 * 117.50474 * 359.97438 * 19 18 9 32 32 H 1.09004 * 117.49952 * 145.02505 * 19 18 9 33 33 H 1.09003 * 117.49859 * 214.97294 * 20 18 9 34 34 H 1.08998 * 117.50400 * 359.96959 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6430 -1.1689 0.0907 6 6 1.4511 -2.4342 -0.0923 7 6 1.2895 -2.8170 -1.5408 8 8 1.7391 -2.1017 -2.4110 9 7 0.6452 -3.9544 -1.8694 10 6 0.4976 -4.3024 -3.1872 11 1 -0.4592 -4.6466 -3.5509 12 6 1.5791 -4.2120 -4.0549 13 7 2.8034 -4.1841 -3.5783 14 14 1.2927 -4.1301 -5.8991 15 1 1.2763 -5.5054 -6.4589 16 1 -0.0101 -3.4703 -6.1689 17 1 2.3841 -3.3496 -6.5354 18 6 0.1026 -4.8186 -0.8184 19 6 -0.5498 -6.1331 -1.2515 20 6 -1.4176 -4.9775 -0.7491 21 1 -0.3633 -0.0959 1.0232 22 1 -0.3633 0.9342 -0.4284 23 1 -0.3633 -0.8381 -0.5947 24 1 4.0692 -1.0273 -0.9025 25 1 3.9672 -0.3589 0.7440 26 1 3.9805 -2.1218 0.4985 27 1 0.4685 -2.3215 0.3657 28 1 2.0080 -3.2128 0.4293 29 1 2.9559 -4.2921 -2.6265 30 1 0.6517 -4.8152 0.1232 31 1 -0.5756 -6.3547 -2.3184 32 1 -0.4299 -6.9949 -0.5948 33 1 -1.8685 -5.0789 0.2380 34 1 -2.0140 -4.4386 -1.4852 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:25 Heat of formation + Delta-G solvation = -27.558911 kcal Electronic energy + Delta-G solvation = -18118.271148 eV Core-core repulsion = 15246.021751 eV Total energy + Delta-G solvation = -2872.249397 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.70127 -38.55302 -36.40509 -34.86756 -32.99068 -31.01747 -30.15510 -27.98630 -25.57456 -24.23089 -21.91662 -21.49185 -20.08375 -18.58608 -17.00297 -16.71440 -16.57478 -15.80323 -14.97547 -14.59448 -14.16225 -13.83259 -13.66374 -13.19969 -12.96072 -12.72562 -12.42020 -12.32728 -11.71017 -11.69005 -11.57106 -11.18612 -10.95615 -10.78718 -10.33611 -10.14336 -9.97471 -9.77065 -9.52410 -9.01145 -8.55942 -7.92568 -7.42381 -6.45566 -4.00230 2.94090 3.36487 3.39305 3.48024 3.61580 3.74339 4.24876 4.51115 4.67759 4.92920 5.18045 5.32134 5.40939 5.44574 5.48844 5.56845 5.57779 5.60123 5.68216 5.80004 5.91535 6.05448 6.10327 6.24059 6.27004 6.54272 6.75364 6.77881 7.65604 7.82883 8.31767 8.49803 8.70280 9.06920 9.45905 9.95647 10.83962 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.009764 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.954152 B = 2867.031736 C = 3586.768643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.521 3.479 3 O -0.557 6.557 4 N -0.593 5.593 5 C 0.093 3.907 6 C 0.093 3.907 7 C 0.439 3.561 8 O -0.523 6.523 9 N -0.431 5.431 10 C -0.426 4.426 11 H 0.071 0.929 12 C 0.038 3.962 13 N -0.846 5.846 14 Si 1.078 2.922 15 H -0.289 1.289 16 H -0.286 1.286 17 H -0.281 1.281 18 C 0.062 3.938 19 C -0.170 4.170 20 C -0.202 4.202 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.269 0.731 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.382 -1.666 9.209 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.310 3.690 3 O -0.436 6.436 4 N -0.325 5.325 5 C -0.050 4.050 6 C -0.034 4.034 7 C 0.225 3.775 8 O -0.400 6.400 9 N -0.153 5.153 10 C -0.553 4.553 11 H 0.088 0.912 12 C -0.174 4.174 13 N -0.477 5.477 14 Si 0.906 3.094 15 H -0.216 1.216 16 H -0.212 1.212 17 H -0.206 1.206 18 C -0.044 4.044 19 C -0.207 4.207 20 C -0.241 4.241 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.103 0.897 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.007 -0.553 7.309 8.354 hybrid contribution -0.857 -0.551 1.568 1.869 sum -4.864 -1.103 8.877 10.182 Atomic orbital electron populations 1.21916 0.92263 1.05318 1.03835 1.20624 0.90519 0.82867 0.74955 1.90650 1.70988 1.31114 1.50855 1.47375 1.07241 1.05633 1.72263 1.21564 0.79414 1.01624 1.02371 1.21619 0.98041 0.86246 0.97501 1.20635 0.84590 0.82298 0.89940 1.90663 1.48554 1.50985 1.49790 1.43017 1.51387 1.16140 1.04774 1.19769 0.98441 1.53420 0.83624 0.91167 1.26215 0.91837 0.92956 1.06431 1.70569 1.21588 1.38910 1.16621 0.83381 0.75946 0.76386 0.73736 1.21628 1.21196 1.20642 1.21829 0.92649 0.96301 0.93600 1.23072 1.03508 0.91193 1.02970 1.23293 0.95017 1.04035 1.01793 0.89343 0.89198 0.89708 0.92175 0.91414 0.91569 0.88617 0.89179 0.92011 0.88000 0.87302 0.89642 0.89586 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.20 36.01 0.33 -2.25 16 2 C 0.52 9.95 7.77 -10.98 -0.09 9.86 16 3 O -0.56 -12.36 16.82 5.56 0.09 -12.27 16 4 N -0.59 -10.93 2.36 -182.95 -0.43 -11.36 16 5 C 0.09 1.60 10.38 59.84 0.62 2.22 16 6 C 0.09 1.61 4.17 -5.19 -0.02 1.59 16 7 C 0.44 10.25 6.08 -10.98 -0.07 10.18 16 8 O -0.52 -14.89 14.37 5.55 0.08 -14.81 16 9 N -0.43 -9.97 2.57 -107.73 -0.28 -10.25 16 10 C -0.43 -11.22 7.82 -14.94 -0.12 -11.34 16 11 H 0.07 1.82 7.34 -52.49 -0.39 1.44 16 12 C 0.04 1.07 4.32 -17.47 -0.08 0.99 16 13 N -0.85 -25.13 12.44 55.50 0.69 -24.44 16 14 Si 1.08 25.35 29.97 -169.99 -5.09 20.26 16 15 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.06 1.11 5.88 -67.93 -0.40 0.71 16 19 C -0.17 -2.81 9.80 -26.73 -0.26 -3.07 16 20 C -0.20 -3.10 10.36 -26.73 -0.28 -3.38 16 21 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 23 H 0.08 1.33 6.47 -51.93 -0.34 0.99 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 26 H 0.07 0.96 7.83 -51.93 -0.41 0.55 16 27 H 0.10 1.36 6.41 -51.93 -0.33 1.03 16 28 H 0.09 1.35 7.28 -51.92 -0.38 0.97 16 29 H 0.27 8.00 7.21 -40.82 -0.29 7.71 16 30 H 0.10 1.53 6.96 -51.93 -0.36 1.17 16 31 H 0.11 2.07 6.75 -51.93 -0.35 1.71 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 LS Contribution 288.39 15.07 4.35 4.35 Total: -1.00 -34.94 288.39 -5.52 -40.46 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.58 Total: 2.54 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.35 Total: 5.52 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.02 Total: -46.05 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: 0.17 Total: -27.08 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.09 Total: 20.26 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -34.94 -5.52 -40.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.905 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds