Wall clock time and date at job start Sun Mar 29 2020 22:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21279 * 120.00046 * 2 1 4 4 N 1.34776 * 119.99957 * 180.02562 * 2 1 3 5 5 C 1.46493 * 119.99976 * 184.12417 * 4 2 1 6 6 C 1.46502 * 119.99576 * 4.12211 * 4 2 1 7 7 C 1.50699 * 109.47254 * 90.00530 * 6 4 2 8 8 O 1.21292 * 120.00054 * 359.97438 * 7 6 4 9 9 N 1.34783 * 119.99978 * 179.97438 * 7 6 4 10 10 C 1.37091 * 119.99917 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99926 * 225.61311 * 10 9 7 12 12 C 1.38945 * 120.00050 * 45.60482 * 10 9 7 13 13 N 1.31411 * 120.00045 * 20.10185 * 12 10 9 14 14 Si 1.86809 * 120.00315 * 200.09873 * 12 10 9 15 15 H 1.48495 * 109.47006 * 270.00683 * 14 12 10 16 16 H 1.48505 * 109.46660 * 30.00180 * 14 12 10 17 17 H 1.48499 * 109.47146 * 150.00226 * 14 12 10 18 18 C 1.46497 * 119.99753 * 359.97438 * 9 7 6 19 19 C 1.53003 * 117.49402 * 183.29407 * 18 9 7 20 20 C 1.52996 * 117.49807 * 114.67223 * 18 9 7 21 21 H 1.09007 * 109.47053 * 264.64309 * 1 2 3 22 22 H 1.09002 * 109.47005 * 24.63377 * 1 2 3 23 23 H 1.08994 * 109.47251 * 144.64133 * 1 2 3 24 24 H 1.09005 * 109.47278 * 275.85324 * 5 4 2 25 25 H 1.08993 * 109.47352 * 35.85280 * 5 4 2 26 26 H 1.09005 * 109.47163 * 155.85483 * 5 4 2 27 27 H 1.08998 * 109.47309 * 329.99536 * 6 4 2 28 28 H 1.09011 * 109.46666 * 209.99992 * 6 4 2 29 29 H 0.96997 * 120.00263 * 4.49502 * 13 12 10 30 30 H 1.09000 * 115.55097 * 328.99813 * 18 9 7 31 31 H 1.08999 * 117.50474 * 359.97438 * 19 18 9 32 32 H 1.09004 * 117.49952 * 145.02505 * 19 18 9 33 33 H 1.09003 * 117.49859 * 214.97294 * 20 18 9 34 34 H 1.08998 * 117.50400 * 359.96959 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6430 -1.1689 0.0907 6 6 1.4511 -2.4342 -0.0923 7 6 1.2895 -2.8170 -1.5408 8 8 1.7391 -2.1017 -2.4110 9 7 0.6452 -3.9544 -1.8694 10 6 0.4976 -4.3024 -3.1872 11 1 -0.4592 -4.6466 -3.5509 12 6 1.5791 -4.2120 -4.0549 13 7 2.8034 -4.1841 -3.5783 14 14 1.2927 -4.1301 -5.8991 15 1 1.2763 -5.5054 -6.4589 16 1 -0.0101 -3.4703 -6.1689 17 1 2.3841 -3.3496 -6.5354 18 6 0.1026 -4.8186 -0.8184 19 6 -0.5498 -6.1331 -1.2515 20 6 -1.4176 -4.9775 -0.7491 21 1 -0.3633 -0.0959 1.0232 22 1 -0.3633 0.9342 -0.4284 23 1 -0.3633 -0.8381 -0.5947 24 1 4.0692 -1.0273 -0.9025 25 1 3.9672 -0.3589 0.7440 26 1 3.9805 -2.1218 0.4985 27 1 0.4685 -2.3215 0.3657 28 1 2.0080 -3.2128 0.4293 29 1 2.9559 -4.2921 -2.6265 30 1 0.6517 -4.8152 0.1232 31 1 -0.5756 -6.3547 -2.3184 32 1 -0.4299 -6.9949 -0.5948 33 1 -1.8685 -5.0789 0.2380 34 1 -2.0140 -4.4386 -1.4852 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894894.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:25 Heat of formation + Delta-G solvation = -51.822946 kcal Electronic energy + Delta-G solvation = -18119.323315 eV Core-core repulsion = 15246.021751 eV Total energy + Delta-G solvation = -2873.301564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.25864 -40.17532 -37.95572 -36.43062 -34.86939 -32.83236 -31.45911 -29.53749 -27.05774 -26.02527 -23.24785 -22.94013 -21.79782 -20.13593 -18.76802 -18.27484 -18.05841 -17.28129 -16.45687 -16.30394 -15.90141 -15.52762 -15.26384 -14.72079 -14.44646 -14.14233 -13.97974 -13.59669 -13.26875 -13.10744 -12.98525 -12.70832 -12.61085 -12.24453 -12.05074 -11.85827 -11.73516 -11.28882 -11.02269 -10.79791 -10.39895 -9.58500 -9.29206 -8.53570 -6.07407 1.44527 1.49197 1.58565 1.72855 2.02611 2.06788 2.46355 2.96877 3.11487 3.32387 3.61164 3.93353 4.03824 4.13429 4.22550 4.27180 4.29638 4.40709 4.42084 4.50326 4.59638 4.81878 4.89866 4.95186 5.01611 5.25409 5.36231 5.46927 5.76559 6.20682 6.26933 6.85090 7.06155 7.17554 7.52389 8.13511 8.73322 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.020876 B = 0.009764 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.954152 B = 2867.031736 C = 3586.768643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.508 3.492 3 O -0.598 6.598 4 N -0.597 5.597 5 C 0.092 3.908 6 C 0.105 3.895 7 C 0.430 3.570 8 O -0.588 6.588 9 N -0.446 5.446 10 C -0.425 4.425 11 H 0.066 0.934 12 C -0.010 4.010 13 N -0.883 5.883 14 Si 1.112 2.888 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.298 1.298 18 C 0.037 3.963 19 C -0.175 4.175 20 C -0.174 4.174 21 H 0.133 0.867 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.020 0.980 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.137 0.863 28 H 0.123 0.877 29 H 0.256 0.744 30 H 0.140 0.860 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.132 0.868 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 -2.811 11.614 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.299 3.701 3 O -0.480 6.480 4 N -0.328 5.328 5 C -0.051 4.051 6 C -0.021 4.021 7 C 0.219 3.781 8 O -0.469 6.469 9 N -0.168 5.168 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.216 4.216 13 N -0.517 5.517 14 Si 0.935 3.065 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.225 1.225 18 C -0.067 4.067 19 C -0.212 4.212 20 C -0.212 4.212 21 H 0.151 0.849 22 H 0.110 0.890 23 H 0.096 0.904 24 H 0.039 0.961 25 H 0.096 0.904 26 H 0.115 0.885 27 H 0.154 0.846 28 H 0.140 0.860 29 H 0.066 0.934 30 H 0.157 0.843 31 H 0.093 0.907 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.976 -1.765 9.738 11.561 hybrid contribution -0.351 -0.209 0.859 0.951 sum -6.326 -1.974 10.597 12.499 Atomic orbital electron populations 1.21932 0.88856 1.05122 1.06486 1.21487 0.92339 0.82402 0.73864 1.90625 1.72176 1.32505 1.52742 1.47564 1.07657 1.06099 1.71434 1.21601 0.79284 1.03721 1.00476 1.21687 1.00644 0.86416 0.93354 1.21682 0.82823 0.81485 0.92132 1.90632 1.50963 1.52974 1.52332 1.43231 1.51390 1.17161 1.05008 1.19862 0.97731 1.51837 0.85796 0.91619 1.27302 0.91863 0.92761 1.09705 1.70676 1.22647 1.42611 1.15724 0.82971 0.75505 0.77560 0.70464 1.18767 1.20180 1.22466 1.22212 0.94715 0.96389 0.93370 1.23116 1.03931 0.92335 1.01862 1.23318 0.92849 1.01705 1.03337 0.84910 0.89023 0.90372 0.96084 0.90437 0.88545 0.84552 0.85964 0.93377 0.84264 0.90655 0.86279 0.85040 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 9.20 71.24 0.66 -3.78 16 2 C 0.51 18.77 7.77 87.66 0.68 19.46 16 3 O -0.60 -26.60 16.82 -3.03 -0.05 -26.65 16 4 N -0.60 -21.09 2.36 -851.13 -2.01 -23.10 16 5 C 0.09 3.13 10.38 127.77 1.33 4.45 16 6 C 0.11 3.32 4.17 85.63 0.36 3.67 16 7 C 0.43 19.78 6.08 87.66 0.53 20.31 16 8 O -0.59 -34.28 14.37 -3.07 -0.04 -34.33 16 9 N -0.45 -20.19 2.57 -613.14 -1.58 -21.76 16 10 C -0.42 -22.54 7.82 84.04 0.66 -21.88 16 11 H 0.07 3.45 7.34 -2.91 -0.02 3.43 16 12 C -0.01 -0.58 4.32 84.93 0.37 -0.21 16 13 N -0.88 -54.07 12.44 21.66 0.27 -53.80 16 14 Si 1.11 52.16 29.97 68.60 2.06 54.22 16 15 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 18 C 0.04 1.21 5.88 44.99 0.26 1.47 16 19 C -0.17 -5.27 9.80 30.60 0.30 -4.97 16 20 C -0.17 -4.58 10.36 30.59 0.32 -4.27 16 21 H 0.13 2.37 8.14 -2.38 -0.02 2.35 16 22 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 23 H 0.08 2.23 6.47 -2.39 -0.02 2.21 16 24 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 25 H 0.08 2.44 7.67 -2.39 -0.02 2.43 16 26 H 0.10 2.62 7.83 -2.38 -0.02 2.60 16 27 H 0.14 3.20 6.41 -2.39 -0.02 3.18 16 28 H 0.12 3.11 7.28 -2.38 -0.02 3.09 16 29 H 0.26 15.71 7.21 -92.71 -0.67 15.05 16 30 H 0.14 3.43 6.96 -2.39 -0.02 3.42 16 31 H 0.07 2.80 6.75 -2.39 -0.02 2.78 16 32 H 0.12 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -81.34 288.39 5.30 -76.04 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 1.20 Total: 15.13 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 5.46 Total: 14.26 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -3.32 Total: -98.67 kcal Atomic # 8 Polarization: -60.88 SS G_CDS: -0.09 Total: -60.98 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.06 Total: 54.22 kcal Total: -81.34 5.30 -76.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894894.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.219 kcal (2) G-P(sol) polarization free energy of solvation -81.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds