Wall clock time and date at job start Sun Mar 29 2020 22:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37095 * 119.99981 * 2 1 4 4 H 1.08007 * 120.00222 * 202.40306 * 3 2 1 5 5 C 1.38953 * 120.00171 * 22.39698 * 3 2 1 6 6 N 1.31409 * 119.99523 * 11.61891 * 5 3 2 7 7 Si 1.86798 * 120.00353 * 191.60891 * 5 3 2 8 8 H 1.48508 * 109.47038 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46897 * 120.00187 * 7 5 3 10 10 H 1.48491 * 109.47296 * 240.00415 * 7 5 3 11 11 C 1.34775 * 120.00336 * 179.97438 * 2 1 3 12 12 O 1.21294 * 120.00152 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99937 * 0.02562 * 11 2 1 14 14 C 1.53004 * 109.47246 * 179.97438 * 13 11 2 15 15 N 1.46504 * 109.46792 * 180.02562 * 14 13 11 16 16 C 1.46758 * 124.34952 * 90.00822 * 15 14 13 17 17 C 1.54485 * 105.54562 * 197.07333 * 16 15 14 18 18 C 1.54621 * 101.76620 * 334.53245 * 17 16 15 19 19 C 1.34621 * 124.46458 * 270.01978 * 15 14 13 20 20 O 1.21280 * 124.91114 * 359.56274 * 19 15 14 21 21 H 1.09004 * 109.46984 * 272.15637 * 1 2 3 22 22 H 1.08996 * 109.47053 * 32.16136 * 1 2 3 23 23 H 1.09000 * 109.46724 * 152.16031 * 1 2 3 24 24 H 0.97004 * 119.99982 * 180.02562 * 6 5 3 25 25 H 1.09004 * 109.46990 * 59.99974 * 13 11 2 26 26 H 1.09002 * 109.47500 * 300.00484 * 13 11 2 27 27 H 1.08997 * 109.47207 * 60.00507 * 14 13 11 28 28 H 1.08993 * 109.47065 * 300.00177 * 14 13 11 29 29 H 1.08990 * 110.25222 * 78.02807 * 16 15 14 30 30 H 1.08999 * 110.24234 * 316.11129 * 16 15 14 31 31 H 1.08993 * 110.97072 * 92.65813 * 17 16 15 32 32 H 1.09006 * 110.96772 * 216.41601 * 17 16 15 33 33 H 1.09000 * 110.48506 * 143.47803 * 18 17 16 34 34 H 1.08995 * 110.49280 * 266.12561 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1694 1.2226 -0.3565 5 6 1.5343 2.3453 0.4585 6 7 0.3896 2.2707 1.0996 7 14 2.3333 4.0079 0.1639 8 1 3.6074 3.8207 -0.5758 9 1 1.4184 4.8620 -0.6353 10 1 2.6090 4.6626 1.4678 11 6 2.1389 -1.1671 0.0005 12 8 3.3519 -1.1671 0.0010 13 6 1.3855 -2.4723 0.0005 14 6 2.3798 -3.6352 0.0005 15 7 1.6472 -4.9039 -0.0001 16 6 1.2337 -5.6208 -1.2121 17 6 0.1510 -6.6219 -0.7519 18 6 0.5231 -6.8275 0.7347 19 6 1.2656 -5.5638 1.1095 20 8 1.4850 -5.1978 2.2447 21 1 -0.3633 0.0387 1.0270 22 1 -0.3633 0.8699 -0.5470 23 1 -0.3633 -0.9087 -0.4799 24 1 -0.0407 3.0791 1.4194 25 1 0.7592 -2.5302 -0.8897 26 1 0.7584 -2.5299 0.8902 27 1 3.0064 -3.5775 0.8905 28 1 3.0064 -3.5774 -0.8894 29 1 2.0813 -6.1535 -1.6430 30 1 0.8180 -4.9234 -1.9394 31 1 -0.8454 -6.1908 -0.8486 32 1 0.2247 -7.5580 -1.3055 33 1 -0.3759 -6.9359 1.3415 34 1 1.1692 -7.6978 0.8495 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068128092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:24 Heat of formation + Delta-G solvation = -63.698435 kcal Electronic energy + Delta-G solvation = -17270.837758 eV Core-core repulsion = 14397.021234 eV Total energy + Delta-G solvation = -2873.816524 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.25584 -38.40774 -36.30334 -34.77600 -33.40437 -31.60955 -29.59329 -27.58379 -26.30549 -24.87908 -23.19510 -21.91633 -19.31334 -18.69208 -16.96609 -16.73296 -16.50322 -15.53350 -15.38299 -14.64798 -14.38355 -14.08755 -13.75436 -13.44408 -13.29491 -12.87273 -12.55003 -12.32957 -11.76777 -11.61804 -11.45950 -11.35620 -11.18627 -11.12819 -10.86514 -10.64662 -10.30500 -10.20955 -9.66357 -9.02021 -8.70370 -8.31458 -7.66490 -6.28810 -3.85652 2.68739 3.10947 3.16525 3.26908 3.34036 3.91153 4.16821 4.31324 4.36416 4.66807 4.91221 4.99437 5.14469 5.33173 5.39571 5.43807 5.52755 5.58898 5.66565 5.81034 5.83098 5.97032 6.29703 6.32075 6.42980 6.72655 6.89674 7.25003 7.27272 7.58951 8.14870 8.29070 8.50274 9.20544 9.44956 9.99974 10.74989 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.048963 B = 0.005018 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.717760 B = 5578.118186 C = 5650.961521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.446 5.446 3 C -0.306 4.306 4 H 0.099 0.901 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.927 3.073 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.449 3.551 12 O -0.594 6.594 13 C -0.143 4.143 14 C 0.146 3.854 15 N -0.620 5.620 16 C 0.099 3.901 17 C -0.132 4.132 18 C -0.155 4.155 19 C 0.511 3.489 20 O -0.530 6.530 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.025 0.975 24 H 0.267 0.733 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 -15.056 -6.144 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.165 5.165 3 C -0.434 4.434 4 H 0.117 0.883 5 C -0.174 4.174 6 N -0.523 5.523 7 Si 0.754 3.246 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.237 3.763 12 O -0.479 6.479 13 C -0.185 4.185 14 C 0.024 3.976 15 N -0.354 5.354 16 C -0.024 4.024 17 C -0.170 4.170 18 C -0.195 4.195 19 C 0.298 3.702 20 O -0.407 6.407 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.044 0.956 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.799 -14.620 -5.464 16.063 hybrid contribution -0.005 0.968 -0.115 0.974 sum -3.804 -13.652 -5.578 15.231 Atomic orbital electron populations 1.21496 0.81145 0.98642 1.01751 1.43607 1.05558 1.04836 1.62502 1.19721 0.99488 0.83808 1.40353 0.88284 1.25358 0.96521 1.00123 0.95391 1.70016 1.17439 1.29150 1.35741 0.85849 0.79227 0.81392 0.78156 1.19221 1.20700 1.20725 1.19868 0.87941 0.84689 0.83848 1.90513 1.13935 1.87255 1.56221 1.21846 0.99393 0.94223 1.03005 1.21126 0.92847 0.79221 1.04400 1.48498 1.56971 1.22997 1.06916 1.22077 0.97494 0.94847 0.87993 1.22595 0.99323 0.99887 0.95162 1.22327 1.02071 0.97432 0.97691 1.20987 0.79057 0.85566 0.84595 1.90746 1.57246 1.71572 1.21096 0.92398 0.91312 0.95625 0.92326 0.90550 0.90091 0.89307 0.89756 0.91124 0.90251 0.89953 0.89336 0.88221 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.61 8.52 59.85 0.51 3.12 16 2 N -0.45 -11.78 3.02 -122.19 -0.37 -12.15 16 3 C -0.31 -8.73 9.29 -14.93 -0.14 -8.87 16 4 H 0.10 2.95 7.41 -52.48 -0.39 2.56 16 5 C 0.03 0.78 5.11 -17.47 -0.09 0.69 16 6 N -0.88 -24.15 10.62 55.50 0.59 -23.56 16 7 Si 0.93 21.12 29.57 -169.99 -5.03 16.09 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 C 0.45 11.19 7.63 -10.99 -0.08 11.10 16 12 O -0.59 -16.62 15.67 5.55 0.09 -16.54 16 13 C -0.14 -2.73 4.55 -27.88 -0.13 -2.86 16 14 C 0.15 2.51 5.23 -4.04 -0.02 2.49 16 15 N -0.62 -8.66 2.94 -172.36 -0.51 -9.17 16 16 C 0.10 0.91 7.34 -3.12 -0.02 0.89 16 17 C -0.13 -0.92 7.18 -25.10 -0.18 -1.10 16 18 C -0.15 -1.45 6.86 -26.74 -0.18 -1.63 16 19 C 0.51 7.68 8.03 -10.77 -0.09 7.59 16 20 O -0.53 -10.58 17.60 5.56 0.10 -10.49 16 21 H 0.06 1.40 7.54 -51.93 -0.39 1.01 16 22 H 0.07 1.64 7.06 -51.93 -0.37 1.27 16 23 H 0.03 0.48 6.36 -51.93 -0.33 0.15 16 24 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.08 1.26 7.41 -51.93 -0.38 0.88 16 26 H 0.08 1.60 8.11 -51.93 -0.42 1.18 16 27 H 0.09 1.77 7.89 -51.93 -0.41 1.36 16 28 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 287.51 15.07 4.33 4.33 Total: -1.00 -34.38 287.51 -6.00 -40.38 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -4.78 Total: -0.33 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -0.42 Total: 11.44 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.29 Total: -44.88 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: 0.18 Total: -27.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -34.38 -6.00 -40.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068128092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.317 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds