Wall clock time and date at job start Sun Mar 29 2020 22:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47211 * 2 1 4 4 C 1.37101 * 120.00063 * 94.63381 * 3 2 1 5 5 H 1.07995 * 120.00232 * 211.89222 * 4 3 2 6 6 C 1.38955 * 119.99881 * 31.89095 * 4 3 2 7 7 N 1.31422 * 119.99659 * 30.59843 * 6 4 3 8 8 Si 1.86792 * 120.00021 * 210.60037 * 6 4 3 9 9 H 1.48500 * 109.47145 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47219 * 299.99737 * 8 6 4 11 11 H 1.48498 * 109.47234 * 60.00349 * 8 6 4 12 12 C 1.34770 * 120.00393 * 274.63663 * 3 2 1 13 13 O 1.21292 * 120.00275 * 176.45958 * 12 3 2 14 14 C 1.50707 * 119.99781 * 356.45397 * 12 3 2 15 15 H 1.09001 * 110.85130 * 54.02942 * 14 12 3 16 16 C 1.54627 * 110.97040 * 290.23836 * 14 12 3 17 17 C 1.51284 * 104.19176 * 266.67529 * 16 14 12 18 18 O 1.21284 * 124.93565 * 163.78254 * 17 16 14 19 19 N 1.34415 * 110.12073 * 343.75270 * 17 16 14 20 20 C 1.46496 * 124.35073 * 179.58804 * 19 17 16 21 21 C 1.46869 * 111.30597 * 359.58271 * 19 17 16 22 22 H 1.09000 * 109.47096 * 299.99799 * 1 2 3 23 23 H 1.08997 * 109.47201 * 59.99606 * 1 2 3 24 24 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47096 * 240.00201 * 2 1 3 26 26 H 1.08997 * 109.47201 * 120.00394 * 2 1 3 27 27 H 0.96991 * 119.99984 * 355.79621 * 7 6 4 28 28 H 1.08996 * 110.48838 * 25.35695 * 16 14 12 29 29 H 1.09003 * 110.48350 * 147.86770 * 16 14 12 30 30 H 1.08994 * 109.47291 * 359.96789 * 20 19 17 31 31 H 1.09005 * 109.47444 * 119.97362 * 20 19 17 32 32 H 1.09005 * 109.47001 * 239.97149 * 20 19 17 33 33 H 1.09001 * 110.25503 * 258.03930 * 21 19 17 34 34 H 1.08998 * 110.27277 * 136.01800 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3373 1.9955 1.1834 5 1 2.1976 3.0607 1.2938 6 6 2.8403 1.2476 2.2410 7 7 3.5587 0.1732 2.0028 8 14 2.4954 1.7692 4.0011 9 1 3.1379 0.8112 4.9363 10 1 3.0444 3.1297 4.2309 11 1 1.0291 1.7810 4.2356 12 6 2.1540 2.0480 -1.1633 13 8 2.4967 3.2115 -1.1590 14 6 1.8801 1.3480 -2.4695 15 1 0.8873 0.8979 -2.4677 16 6 2.9670 0.2897 -2.7687 17 6 3.9774 1.0263 -3.6203 18 8 5.1096 0.6492 -3.8369 19 7 3.4377 2.1591 -4.1023 20 6 4.1468 3.1137 -4.9578 21 6 2.0457 2.3167 -3.6612 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.6868 -0.1322 1.0911 28 1 3.4276 -0.0563 -1.8435 29 1 2.5410 -0.5495 -3.3188 30 1 5.1625 2.7596 -5.1333 31 1 3.6245 3.2060 -5.9101 32 1 4.1809 4.0862 -4.4664 33 1 1.3620 2.0457 -4.4657 34 1 1.8649 3.3429 -3.3413 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240813.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:10 Heat of formation + Delta-G solvation = -83.106579 kcal Electronic energy + Delta-G solvation = -18166.919947 eV Core-core repulsion = 15292.261823 eV Total energy + Delta-G solvation = -2874.658124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.90783 -40.13018 -37.61663 -36.93533 -34.43189 -33.33385 -31.23643 -28.76338 -28.07807 -26.57453 -24.65142 -23.24960 -21.04322 -20.47529 -19.40757 -18.22613 -17.77499 -16.89005 -16.67327 -16.25971 -16.01292 -15.56997 -14.89815 -14.72309 -14.64819 -14.56857 -14.25081 -13.43294 -13.29681 -13.12150 -13.07024 -13.00269 -12.80424 -12.53628 -12.32317 -12.04559 -11.94343 -11.76103 -11.00858 -10.83362 -10.34441 -9.76489 -9.67121 -8.85096 -6.06715 1.42080 1.49398 1.53408 1.80809 1.93836 2.07597 2.38067 2.84303 2.97969 3.25228 3.43754 3.71580 3.92600 4.17977 4.30467 4.34039 4.42238 4.50162 4.59353 4.61575 4.71360 4.76359 4.80496 4.85928 4.99942 5.13581 5.40295 5.47969 5.81004 5.93301 6.00356 6.63628 6.93693 7.03030 7.42918 7.93520 8.46520 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.007627 C = 0.007426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.659735 B = 3670.273343 C = 3769.739188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.075 3.925 3 N -0.458 5.458 4 C -0.430 4.430 5 H 0.053 0.947 6 C -0.024 4.024 7 N -0.883 5.883 8 Si 1.120 2.880 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.262 1.262 12 C 0.445 3.555 13 O -0.625 6.625 14 C -0.109 4.109 15 H 0.153 0.847 16 C -0.138 4.138 17 C 0.505 3.495 18 O -0.587 6.587 19 N -0.617 5.617 20 C 0.090 3.910 21 C 0.121 3.879 22 H 0.038 0.962 23 H 0.067 0.933 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.265 0.735 28 H 0.081 0.919 29 H 0.158 0.842 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 -2.044 -10.307 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.048 4.048 3 N -0.177 5.177 4 C -0.557 4.557 5 H 0.071 0.929 6 C -0.227 4.227 7 N -0.518 5.518 8 Si 0.940 3.060 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.187 1.187 12 C 0.235 3.765 13 O -0.511 6.511 14 C -0.131 4.131 15 H 0.170 0.830 16 C -0.178 4.178 17 C 0.294 3.706 18 O -0.469 6.469 19 N -0.350 5.350 20 C -0.051 4.051 21 C -0.001 4.001 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.176 0.824 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.835 -1.986 -8.878 12.006 hybrid contribution 0.250 0.715 -1.276 1.484 sum -7.585 -1.271 -10.154 12.738 Atomic orbital electron populations 1.22057 0.93971 1.03037 1.01919 1.21967 0.96118 0.83362 1.03349 1.43841 1.55910 1.13174 1.04802 1.20128 1.49052 0.95111 0.91457 0.92944 1.27655 0.90990 0.95715 1.08334 1.70929 1.28723 1.27967 1.24184 0.82851 0.77743 0.75813 0.69588 1.20039 1.20761 1.18696 1.20940 0.81581 0.87776 0.86250 1.90485 1.53362 1.19574 1.87706 1.22310 1.02537 0.96404 0.91828 0.82955 1.22419 0.95279 0.99349 1.00721 1.21341 0.87428 0.82243 0.79584 1.90646 1.20886 1.72001 1.63358 1.48293 1.14864 1.22047 1.49787 1.21698 0.97395 0.91543 0.94485 1.22195 0.81609 1.00780 0.95505 0.94280 0.91432 0.89160 0.89397 0.91406 0.92390 0.90075 0.82440 0.91518 0.88326 0.92200 0.85511 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 10.13 71.98 0.73 -3.81 16 2 C 0.07 2.88 4.64 86.38 0.40 3.29 16 3 N -0.46 -22.21 2.38 -635.55 -1.52 -23.72 16 4 C -0.43 -24.36 8.94 84.04 0.75 -23.61 16 5 H 0.05 3.27 7.70 -2.91 -0.02 3.25 16 6 C -0.02 -1.28 4.70 84.93 0.40 -0.88 16 7 N -0.88 -49.50 12.47 21.67 0.27 -49.23 16 8 Si 1.12 47.91 30.02 68.60 2.06 49.97 16 9 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 12 C 0.44 20.47 6.87 87.66 0.60 21.07 16 13 O -0.62 -34.62 15.33 -3.07 -0.05 -34.67 16 14 C -0.11 -3.33 2.58 -10.48 -0.03 -3.36 16 15 H 0.15 3.31 6.61 -2.39 -0.02 3.29 16 16 C -0.14 -4.21 5.20 30.59 0.16 -4.05 16 17 C 0.50 18.75 8.02 87.90 0.71 19.46 16 18 O -0.59 -26.38 17.35 -3.04 -0.05 -26.43 16 19 N -0.62 -19.42 3.34 -842.65 -2.81 -22.23 16 20 C 0.09 2.33 11.14 127.77 1.42 3.76 16 21 C 0.12 3.24 6.67 86.81 0.58 3.82 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.07 1.72 6.89 -2.39 -0.02 1.70 16 24 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 25 H 0.09 2.81 4.95 -2.39 -0.01 2.80 16 26 H 0.07 3.02 5.30 -2.39 -0.01 3.01 16 27 H 0.27 14.97 6.86 -92.71 -0.64 14.33 16 28 H 0.08 2.99 6.65 -2.39 -0.02 2.98 16 29 H 0.16 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.07 1.89 7.53 -2.39 -0.02 1.88 16 31 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 2.40 7.05 -2.39 -0.02 2.38 16 Total: -1.00 -79.51 279.49 4.86 -74.65 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.24 Total: 15.99 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 5.72 Total: 15.69 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -4.06 Total: -95.18 kcal Atomic # 8 Polarization: -61.00 SS G_CDS: -0.10 Total: -61.10 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.06 Total: 49.97 kcal Total: -79.51 4.86 -74.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240813.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.460 kcal (2) G-P(sol) polarization free energy of solvation -79.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds