Wall clock time and date at job start Sun Mar 29 2020 22:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47090 * 2 1 4 4 C 1.37093 * 120.00090 * 264.33518 * 3 2 1 5 5 H 1.07996 * 120.00386 * 135.68437 * 4 3 2 6 6 C 1.38956 * 119.99655 * 315.68346 * 4 3 2 7 7 N 1.31415 * 120.00267 * 2.34903 * 6 4 3 8 8 Si 1.86799 * 119.99920 * 182.35182 * 6 4 3 9 9 H 1.48503 * 109.47109 * 60.00042 * 8 6 4 10 10 H 1.48498 * 109.47170 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47130 * 300.00135 * 8 6 4 12 12 C 1.34776 * 119.99856 * 84.33311 * 3 2 1 13 13 O 1.21293 * 119.99711 * 184.34967 * 12 3 2 14 14 C 1.50697 * 120.00049 * 4.34426 * 12 3 2 15 15 H 1.08995 * 110.86052 * 328.93850 * 14 12 3 16 16 C 1.54630 * 110.96707 * 92.72628 * 14 12 3 17 17 C 1.51387 * 104.14733 * 93.33107 * 16 14 12 18 18 O 1.21280 * 124.93171 * 196.21925 * 17 16 14 19 19 N 1.34410 * 110.12275 * 16.26083 * 17 16 14 20 20 C 1.46501 * 124.34799 * 180.42574 * 19 17 16 21 21 C 1.46765 * 111.30585 * 0.39900 * 19 17 16 22 22 H 1.08997 * 109.47313 * 300.00158 * 1 2 3 23 23 H 1.08995 * 109.47283 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46971 * 59.99720 * 1 2 3 25 25 H 1.09003 * 109.46780 * 119.99790 * 2 1 3 26 26 H 1.08996 * 109.46868 * 240.00139 * 2 1 3 27 27 H 0.96999 * 119.99674 * 179.97438 * 7 6 4 28 28 H 1.08999 * 110.48668 * 211.99729 * 16 14 12 29 29 H 1.08998 * 110.48518 * 334.64393 * 16 14 12 30 30 H 1.09006 * 109.47206 * 269.97267 * 20 19 17 31 31 H 1.09003 * 109.47251 * 29.97294 * 20 19 17 32 32 H 1.09004 * 109.47306 * 149.97119 * 20 19 17 33 33 H 1.09003 * 110.24648 * 223.98590 * 21 19 17 34 34 H 1.08997 * 110.24502 * 101.98856 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3573 1.9885 -1.1814 5 1 2.0399 3.0018 -1.3784 6 6 3.1094 1.3001 -2.1256 7 7 3.4565 0.0518 -1.9061 8 14 3.6272 2.1492 -3.7068 9 1 4.4584 3.3361 -3.3821 10 1 4.4158 1.2061 -4.5398 11 1 2.4194 2.5806 -4.4554 12 6 2.1343 2.0550 1.1615 13 8 2.4628 3.2226 1.1551 14 6 1.8556 1.3577 2.4681 15 1 1.0991 0.5834 2.3412 16 6 3.1534 0.7701 3.0694 17 6 3.6543 1.8544 3.9995 18 8 4.7774 1.9161 4.4530 19 7 2.6731 2.7382 4.2502 20 6 2.8221 3.9179 5.1060 21 6 1.4336 2.3701 3.5560 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.9812 -0.4288 -2.5654 28 1 2.9369 -0.1411 3.6271 29 1 3.8829 0.5735 2.2838 30 1 2.5674 3.6562 6.1331 31 1 3.8534 4.2684 5.0655 32 1 2.1562 4.7069 4.7563 33 1 0.9822 3.2501 3.0977 34 1 0.7348 1.9063 4.2522 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240814.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:12 Heat of formation + Delta-G solvation = -60.793824 kcal Electronic energy + Delta-G solvation = -18041.780484 eV Core-core repulsion = 15168.089913 eV Total energy + Delta-G solvation = -2873.690571 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30846 -38.26009 -35.89233 -34.88042 -32.68346 -31.73227 -29.47716 -27.36866 -26.71515 -25.02565 -22.75131 -21.78442 -19.33364 -18.71197 -17.16628 -16.48786 -16.23862 -15.27585 -15.09877 -14.72619 -14.06781 -14.02704 -13.27129 -13.15082 -12.94364 -12.87162 -12.35030 -12.09643 -12.04244 -11.78167 -11.42810 -11.36459 -11.10736 -10.97120 -10.83785 -10.47965 -10.32571 -10.07131 -9.44740 -8.91070 -8.53364 -8.36232 -7.45082 -6.27665 -4.10738 2.94811 3.19320 3.24979 3.28667 3.36796 3.74646 4.11188 4.62723 4.68996 4.90191 5.09555 5.23155 5.43619 5.50034 5.54731 5.73323 5.77456 5.86086 5.88325 5.97416 6.10947 6.20939 6.30971 6.31896 6.52178 6.79127 6.91598 7.34990 7.40459 7.61484 8.29375 8.50534 8.52240 9.14459 9.35228 9.95049 10.70769 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.029286 B = 0.007699 C = 0.007147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.870057 B = 3635.941480 C = 3917.040927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 N -0.439 5.439 4 C -0.304 4.304 5 H 0.086 0.914 6 C 0.039 3.961 7 N -0.882 5.882 8 Si 0.924 3.076 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.470 3.530 13 O -0.572 6.572 14 C -0.124 4.124 15 H 0.109 0.891 16 C -0.137 4.137 17 C 0.525 3.475 18 O -0.544 6.544 19 N -0.614 5.614 20 C 0.101 3.899 21 C 0.123 3.877 22 H 0.038 0.962 23 H 0.050 0.950 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.130 0.870 27 H 0.269 0.731 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 -1.297 7.843 10.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.039 4.039 3 N -0.158 5.158 4 C -0.432 4.432 5 H 0.104 0.896 6 C -0.164 4.164 7 N -0.521 5.521 8 Si 0.751 3.249 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.199 1.199 12 C 0.257 3.743 13 O -0.455 6.455 14 C -0.146 4.146 15 H 0.127 0.873 16 C -0.178 4.178 17 C 0.313 3.687 18 O -0.421 6.421 19 N -0.348 5.348 20 C -0.041 4.041 21 C 0.000 4.000 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.147 0.853 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.844 -0.763 7.985 9.924 hybrid contribution 0.115 0.228 -0.820 0.859 sum -5.730 -0.535 7.164 9.189 Atomic orbital electron populations 1.22239 0.98560 1.00256 1.01209 1.21900 0.91336 0.85683 1.04938 1.43395 1.55974 1.11889 1.04548 1.19337 1.31235 0.99720 0.92888 0.89641 1.25510 0.95017 0.95741 1.00136 1.69549 1.37020 1.09202 1.36307 0.86043 0.78940 0.79178 0.80772 1.19753 1.20894 1.19906 1.20024 0.81896 0.87841 0.84536 1.90544 1.51261 1.16837 1.86873 1.22378 0.98547 0.98736 0.94941 0.87317 1.22232 0.98257 0.97770 0.99546 1.20842 0.84119 0.83302 0.80401 1.90664 1.19622 1.76616 1.55244 1.47978 1.12805 1.25567 1.48464 1.21450 1.03032 0.86754 0.92843 1.21943 0.86120 0.99177 0.92782 0.94267 0.93127 0.92543 0.93680 0.85301 0.92017 0.87620 0.87378 0.93101 0.91016 0.91147 0.89626 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.99 37.16 0.37 -2.41 16 2 C 0.09 1.76 5.26 -4.04 -0.02 1.73 16 3 N -0.44 -10.66 2.54 -114.81 -0.29 -10.95 16 4 C -0.30 -8.22 8.87 -14.93 -0.13 -8.35 16 5 H 0.09 2.41 7.77 -52.49 -0.41 2.00 16 6 C 0.04 1.01 5.35 -17.46 -0.09 0.92 16 7 N -0.88 -23.03 10.76 55.50 0.60 -22.43 16 8 Si 0.92 20.73 29.55 -169.99 -5.02 15.71 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.47 10.91 6.62 -10.99 -0.07 10.84 16 13 O -0.57 -15.43 15.99 5.55 0.09 -15.34 16 14 C -0.12 -2.13 2.57 -90.14 -0.23 -2.36 16 15 H 0.11 1.57 5.55 -51.93 -0.29 1.28 16 16 C -0.14 -2.37 6.30 -26.69 -0.17 -2.53 16 17 C 0.53 10.18 8.02 -10.81 -0.09 10.09 16 18 O -0.54 -12.22 17.59 5.56 0.10 -12.13 16 19 N -0.61 -10.31 3.33 -180.24 -0.60 -10.91 16 20 C 0.10 1.39 10.96 59.85 0.66 2.04 16 21 C 0.12 1.85 6.54 -3.12 -0.02 1.83 16 22 H 0.04 0.60 7.14 -51.93 -0.37 0.23 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.83 6.60 -51.93 -0.34 0.49 16 26 H 0.13 3.01 5.23 -51.93 -0.27 2.74 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.11 2.13 7.90 -51.93 -0.41 1.72 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.06 7.93 -51.93 -0.41 0.65 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.37 7.52 -51.93 -0.39 0.98 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 284.38 15.07 4.29 4.29 Total: -1.00 -32.71 284.38 -5.21 -37.93 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -4.56 Total: 2.04 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 0.20 Total: 11.80 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.30 Total: -44.30 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: 0.19 Total: -27.46 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.71 -5.21 -37.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240814.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.868 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds