Wall clock time and date at job start Sun Mar 29 2020 22:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47477 * 2 1 4 4 C 1.37095 * 120.00258 * 262.97910 * 3 2 1 5 5 H 1.08003 * 120.00366 * 142.20862 * 4 3 2 6 6 C 1.38950 * 119.99853 * 322.21260 * 4 3 2 7 7 N 1.31414 * 119.99807 * 157.13170 * 6 4 3 8 8 Si 1.86798 * 120.00091 * 337.13482 * 6 4 3 9 9 H 1.48503 * 109.46932 * 95.20381 * 8 6 4 10 10 H 1.48494 * 109.47253 * 215.20576 * 8 6 4 11 11 H 1.48499 * 109.47073 * 335.20630 * 8 6 4 12 12 C 1.34775 * 120.00049 * 82.97709 * 3 2 1 13 13 O 1.21287 * 120.00385 * 180.02562 * 12 3 2 14 14 C 1.50707 * 120.00033 * 0.02562 * 12 3 2 15 15 N 1.46495 * 109.47394 * 180.02562 * 14 12 3 16 16 C 1.34773 * 120.00218 * 179.97438 * 15 14 12 17 17 O 1.21285 * 119.99858 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00092 * 179.97438 * 16 15 14 19 19 C 1.52997 * 117.49975 * 248.62388 * 18 16 15 20 20 C 1.53001 * 117.49596 * 180.02562 * 18 16 15 21 21 H 1.09005 * 109.47304 * 300.00370 * 1 2 3 22 22 H 1.09004 * 109.46953 * 59.99358 * 1 2 3 23 23 H 1.08995 * 109.47525 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46857 * 239.99727 * 2 1 3 25 25 H 1.08997 * 109.47261 * 120.00024 * 2 1 3 26 26 H 0.96999 * 119.99744 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.47071 * 59.99548 * 14 12 3 28 28 H 1.09009 * 109.47031 * 299.99946 * 14 12 3 29 29 H 0.97001 * 119.99926 * 0.02562 * 15 14 12 30 30 H 1.08999 * 115.54727 * 34.33255 * 18 16 15 31 31 H 1.08998 * 117.49848 * 0.02562 * 19 18 16 32 32 H 1.09000 * 117.50108 * 145.02183 * 19 18 16 33 33 H 1.09001 * 117.49673 * 214.97909 * 20 18 16 34 34 H 1.08992 * 117.49997 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3838 1.9791 -1.1783 5 1 2.1622 3.0228 -1.3458 6 6 3.0391 1.2423 -2.1573 7 7 2.9964 1.6319 -3.4116 8 14 3.9806 -0.3020 -1.6904 9 1 3.1110 -1.4899 -1.8858 10 1 5.1865 -0.4249 -2.5481 11 1 4.3925 -0.2191 -0.2661 12 6 2.1085 2.0641 1.1584 13 8 2.5124 3.2077 1.1584 14 6 1.7074 1.4067 2.4539 15 7 1.8957 2.3498 3.5589 16 6 1.5993 1.9781 4.8200 17 8 1.1771 0.8626 5.0401 18 6 1.7936 2.9482 5.9569 19 6 2.9047 2.6434 6.9635 20 6 1.4396 2.4661 7.3652 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.4536 1.1173 -4.0951 27 1 2.3249 0.5240 2.6198 28 1 0.6591 1.1123 2.4026 29 1 2.2331 3.2421 3.3829 30 1 1.6019 3.9946 5.7199 31 1 3.4955 1.7415 6.8033 32 1 3.4444 3.4895 7.3890 33 1 1.0149 3.1955 8.0549 34 1 1.0658 1.4475 7.4693 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:15 Heat of formation + Delta-G solvation = -59.890012 kcal Electronic energy + Delta-G solvation = -17286.916324 eV Core-core repulsion = 14413.264946 eV Total energy + Delta-G solvation = -2873.651378 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31502 -40.40373 -37.37454 -37.02130 -35.46126 -34.36942 -31.43918 -29.88262 -26.73473 -24.74315 -24.33342 -23.27502 -21.30488 -20.83438 -18.98693 -18.66069 -17.86729 -17.26988 -16.97730 -16.67959 -16.08050 -15.64595 -15.36768 -14.90980 -14.82804 -14.43844 -14.12510 -14.02298 -13.51472 -13.38007 -13.04193 -12.72634 -12.55040 -12.40619 -11.98602 -11.68346 -11.53423 -11.44681 -11.13254 -11.00889 -10.57101 -10.22319 -9.81250 -8.55965 -6.18625 1.17537 1.29728 1.42448 1.43741 1.77308 1.95579 2.14685 2.65408 2.90103 2.94631 3.62256 3.74594 3.87031 3.99981 4.02537 4.17563 4.24931 4.34822 4.40530 4.51027 4.76299 4.88677 4.93022 4.95501 5.04265 5.20947 5.26595 5.35064 5.48747 5.99763 6.44219 6.47728 6.84807 7.11417 7.22262 7.70797 8.60562 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.038942 B = 0.005727 C = 0.005585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.846864 B = 4888.092326 C = 5012.433689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.072 3.928 3 N -0.466 5.466 4 C -0.336 4.336 5 H 0.049 0.951 6 C 0.020 3.980 7 N -0.903 5.903 8 Si 0.941 3.059 9 H -0.238 1.238 10 H -0.286 1.286 11 H -0.260 1.260 12 C 0.452 3.548 13 O -0.604 6.604 14 C 0.113 3.887 15 N -0.709 5.709 16 C 0.539 3.461 17 O -0.582 6.582 18 C -0.207 4.207 19 C -0.143 4.143 20 C -0.141 4.141 21 H 0.061 0.939 22 H 0.044 0.956 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.282 0.718 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.414 0.586 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -3.566 17.024 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.050 4.050 3 N -0.187 5.187 4 C -0.464 4.464 5 H 0.067 0.933 6 C -0.183 4.183 7 N -0.540 5.540 8 Si 0.764 3.236 9 H -0.163 1.163 10 H -0.213 1.213 11 H -0.184 1.184 12 C 0.242 3.758 13 O -0.489 6.489 14 C -0.014 4.014 15 N -0.362 5.362 16 C 0.327 3.673 17 O -0.463 6.463 18 C -0.228 4.228 19 C -0.180 4.180 20 C -0.179 4.179 21 H 0.080 0.920 22 H 0.063 0.937 23 H 0.114 0.886 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.252 0.748 30 H 0.163 0.837 31 H 0.107 0.893 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.335 -3.823 16.910 17.493 hybrid contribution 0.619 0.165 -0.941 1.138 sum -1.717 -3.658 15.969 16.472 Atomic orbital electron populations 1.22093 0.93819 1.03594 1.01978 1.22164 0.96871 0.83007 1.02957 1.43815 1.56692 1.13147 1.05061 1.18624 1.39155 0.96907 0.91670 0.93297 1.26082 0.96197 1.02030 0.94030 1.69865 1.40703 1.42409 1.00992 0.85942 0.78897 0.79481 0.79280 1.16298 1.21268 1.18439 1.20852 0.81676 0.87612 0.85677 1.90508 1.51557 1.20039 1.86810 1.21073 1.03471 0.92823 0.84070 1.45774 1.66526 1.18220 1.05728 1.20302 0.75893 0.87744 0.83314 1.90648 1.47655 1.23224 1.84761 1.22241 1.10635 1.00178 0.89743 1.23056 0.91637 1.04327 0.98969 1.23029 0.98028 1.03440 0.93359 0.92024 0.93710 0.88568 0.91300 0.88658 0.90856 0.88371 0.87952 0.74803 0.83695 0.89347 0.85026 0.85182 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.88 10.11 71.98 0.73 -4.16 16 2 C 0.07 2.67 4.46 86.38 0.39 3.06 16 3 N -0.47 -22.03 2.18 -635.54 -1.39 -23.42 16 4 C -0.34 -19.29 9.35 84.04 0.79 -18.51 16 5 H 0.05 3.28 7.92 -2.91 -0.02 3.26 16 6 C 0.02 1.10 5.24 84.93 0.45 1.54 16 7 N -0.90 -52.60 13.96 21.66 0.30 -52.29 16 8 Si 0.94 40.90 25.12 68.60 1.72 42.63 16 9 H -0.24 -9.02 6.67 99.48 0.66 -8.36 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 12 C 0.45 20.45 7.64 87.66 0.67 21.12 16 13 O -0.60 -31.69 15.54 -3.05 -0.05 -31.73 16 14 C 0.11 3.92 4.77 85.64 0.41 4.33 16 15 N -0.71 -22.56 5.53 -466.78 -2.58 -25.14 16 16 C 0.54 15.94 7.61 87.66 0.67 16.61 16 17 O -0.58 -20.57 16.26 -3.05 -0.05 -20.62 16 18 C -0.21 -4.28 6.19 -11.54 -0.07 -4.35 16 19 C -0.14 -2.35 10.23 30.58 0.31 -2.04 16 20 C -0.14 -2.41 10.04 30.58 0.31 -2.10 16 21 H 0.06 1.79 6.39 -2.38 -0.02 1.78 16 22 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 23 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16 24 H 0.07 2.68 3.72 -2.39 -0.01 2.67 16 25 H 0.10 2.90 6.74 -2.39 -0.02 2.88 16 26 H 0.28 15.00 8.31 -92.71 -0.77 14.23 16 27 H 0.10 3.19 7.42 -2.39 -0.02 3.17 16 28 H 0.10 3.28 6.35 -2.38 -0.02 3.26 16 29 H 0.41 13.10 7.44 -92.71 -0.69 12.41 16 30 H 0.15 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.88 7.67 -2.39 -0.02 1.86 16 Total: -1.00 -72.28 285.90 2.98 -69.30 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.39 Total: 25.78 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 4.64 Total: 15.50 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -3.67 Total: -100.85 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.10 Total: -52.35 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 1.72 Total: 42.63 kcal Total: -72.28 2.98 -69.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.407 kcal (2) G-P(sol) polarization free energy of solvation -72.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds