Wall clock time and date at job start Sun Mar 29 2020 22:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00387 * 2 1 4 4 H 1.48497 * 109.46709 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47341 * 239.99690 * 3 2 1 6 6 H 1.48503 * 109.46880 * 119.99769 * 3 2 1 7 7 C 1.38811 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00696 * 211.12592 * 7 2 1 9 9 N 1.36936 * 119.99891 * 31.12869 * 7 2 1 10 10 C 1.47082 * 120.88015 * 23.16856 * 9 7 2 11 11 C 1.53701 * 108.27558 * 128.75414 * 10 9 7 12 12 N 1.46902 * 109.25740 * 54.08580 * 11 10 9 13 13 C 1.46896 * 110.99933 * 172.60999 * 12 11 10 14 14 C 1.53007 * 109.46949 * 188.63787 * 13 12 11 15 15 H 1.09005 * 110.80200 * 305.55687 * 14 13 12 16 16 C 1.54809 * 110.90752 * 181.93313 * 14 13 12 17 17 C 1.54100 * 104.18336 * 220.92005 * 16 14 13 18 18 O 1.43738 * 107.29805 * 357.96407 * 17 16 14 19 19 C 1.44379 * 106.97129 * 26.51708 * 18 17 16 20 20 C 1.46903 * 111.26589 * 296.75223 * 12 11 10 21 21 C 1.47079 * 120.88351 * 203.44329 * 9 7 2 22 22 H 0.96991 * 119.99880 * 185.74068 * 1 2 3 23 23 H 1.09005 * 109.62644 * 248.51869 * 10 9 7 24 24 H 1.08997 * 109.63268 * 9.10447 * 10 9 7 25 25 H 1.08992 * 109.64990 * 294.07880 * 11 10 9 26 26 H 1.09007 * 109.44183 * 173.95570 * 11 10 9 27 27 H 1.09003 * 109.47095 * 308.62545 * 13 12 11 28 28 H 1.08991 * 109.47559 * 68.63813 * 13 12 11 29 29 H 1.09000 * 110.48782 * 339.58935 * 16 14 13 30 30 H 1.08995 * 110.48899 * 102.11094 * 16 14 13 31 31 H 1.09000 * 109.87982 * 117.39507 * 17 16 14 32 32 H 1.09005 * 109.87381 * 238.38980 * 17 16 14 33 33 H 1.09010 * 110.61776 * 201.43559 * 19 18 17 34 34 H 1.09001 * 110.61759 * 78.44363 * 19 18 17 35 35 H 1.08999 * 109.49460 * 303.15095 * 20 12 11 36 36 H 1.09003 * 109.49402 * 183.06426 * 20 12 11 37 37 H 1.09003 * 109.63035 * 350.89933 * 21 9 7 38 38 H 1.08998 * 109.62805 * 111.28029 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1041 1.6963 -1.2124 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 2.9736 -1.2695 0.4840 9 7 1.4733 -2.3029 -0.6120 10 6 0.4671 -2.1596 -1.6752 11 6 0.9221 -2.9915 -2.8848 12 7 1.1777 -4.3726 -2.4545 13 6 1.4452 -5.2424 -3.6076 14 6 1.4927 -6.7005 -3.1465 15 1 2.2114 -6.8273 -2.3368 16 6 1.8211 -7.6436 -4.3294 17 6 0.8920 -8.8544 -4.1162 18 8 0.1596 -8.6225 -2.9013 19 6 0.0859 -7.1920 -2.7203 20 6 2.2781 -4.4330 -1.4831 21 6 1.8832 -3.6600 -0.2202 22 1 -0.4849 -0.8358 0.0840 23 1 -0.4967 -2.5232 -1.3185 24 1 0.3831 -1.1111 -1.9610 25 1 1.8351 -2.5652 -3.3003 26 1 0.1398 -2.9861 -3.6439 27 1 0.6528 -5.1206 -4.3461 28 1 2.4022 -4.9710 -4.0532 29 1 1.6003 -7.1559 -5.2789 30 1 2.8662 -7.9511 -4.2934 31 1 0.2009 -8.9435 -4.9544 32 1 1.4846 -9.7649 -4.0263 33 1 -0.1062 -6.9467 -1.6756 34 1 -0.6820 -6.7627 -3.3638 35 1 3.1722 -3.9865 -1.9181 36 1 2.4789 -5.4729 -1.2252 37 1 2.7359 -3.6040 0.4564 38 1 1.0541 -4.1638 0.2766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070994853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:37 Heat of formation + Delta-G solvation = -19.011574 kcal Electronic energy + Delta-G solvation = -17993.688882 eV Core-core repulsion = 15257.643220 eV Total energy + Delta-G solvation = -2736.045662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63033 -38.00912 -34.96292 -32.61710 -31.08937 -30.08814 -29.16710 -26.75303 -24.36953 -22.93809 -22.74100 -21.99334 -20.18775 -19.11760 -17.38873 -16.67193 -15.82278 -15.24290 -15.05936 -14.41145 -14.17505 -14.03853 -13.67220 -13.50395 -13.32790 -13.08341 -12.62940 -11.84989 -11.68690 -11.62157 -11.36329 -10.97151 -10.79569 -10.71869 -10.64355 -10.42191 -10.17219 -10.09187 -9.95479 -9.70470 -9.36583 -8.34083 -7.92576 -6.89262 -6.10532 -3.14786 3.50387 3.53844 3.72128 3.89607 4.17897 4.58936 4.61215 4.69018 4.90615 4.99210 5.17907 5.24135 5.40080 5.42805 5.54194 5.59961 5.62684 5.72304 5.78055 5.82646 5.90902 6.01686 6.04682 6.08071 6.17579 6.21885 6.37450 6.53274 6.76826 6.83732 6.96623 7.16408 7.49513 7.55600 7.99238 8.56606 9.11403 9.86169 10.32496 11.19943 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058490 B = 0.005042 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.598317 B = 5552.358496 C = 5572.335129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.022 4.022 3 Si 1.057 2.943 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.293 1.293 7 C -0.355 4.355 8 H 0.057 0.943 9 N -0.601 5.601 10 C 0.158 3.842 11 C 0.042 3.958 12 N -0.533 5.533 13 C 0.065 3.935 14 C -0.118 4.118 15 H 0.087 0.913 16 C -0.152 4.152 17 C 0.048 3.952 18 O -0.385 6.385 19 C 0.064 3.936 20 C 0.041 3.959 21 C 0.151 3.849 22 H 0.269 0.731 23 H 0.024 0.976 24 H 0.080 0.920 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.917 -13.354 -9.132 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.225 4.225 3 Si 0.887 3.113 4 H -0.211 1.211 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.484 4.484 8 H 0.075 0.925 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.088 4.088 12 N -0.258 5.258 13 C -0.064 4.064 14 C -0.137 4.137 15 H 0.105 0.895 16 C -0.191 4.191 17 C -0.029 4.029 18 O -0.304 6.304 19 C -0.013 4.013 20 C -0.088 4.088 21 C 0.024 3.976 22 H 0.080 0.920 23 H 0.042 0.958 24 H 0.099 0.901 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.246 -11.988 -8.802 15.041 hybrid contribution 1.140 -1.253 -0.534 1.776 sum 3.386 -13.241 -9.336 16.552 Atomic orbital electron populations 1.70782 1.06738 1.30197 1.47096 1.25719 0.96272 1.01270 0.99213 0.83641 0.75035 0.76443 0.76189 1.21101 1.22222 1.22014 1.19953 1.01399 0.90093 1.36914 0.92499 1.44220 1.48494 1.00804 1.39046 1.21097 0.91079 0.98366 0.86337 1.22800 0.99136 0.87704 0.99122 1.61955 1.41849 1.09259 1.12695 1.22052 0.99643 0.91392 0.93302 1.22768 0.98549 0.94536 0.97804 0.89489 1.22972 1.00576 0.96227 0.99299 1.23084 0.93739 0.98146 0.87896 1.88858 1.75776 1.23841 1.41947 1.23521 0.95626 0.79407 1.02710 1.22675 0.91635 0.99398 0.95091 1.20947 0.97622 0.86258 0.92736 0.92048 0.95764 0.90130 0.95295 0.91972 0.91035 0.95142 0.90678 0.90666 0.92713 0.90266 0.88343 0.92132 0.95368 0.91694 0.92589 0.95891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.24 12.41 55.49 0.69 -26.55 16 2 C -0.02 -0.63 4.55 -17.43 -0.08 -0.71 16 3 Si 1.06 25.23 30.02 -169.99 -5.10 20.12 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.35 -10.01 9.50 -15.06 -0.14 -10.15 16 8 H 0.06 1.61 7.97 -52.49 -0.42 1.20 16 9 N -0.60 -15.28 2.92 -171.73 -0.50 -15.79 16 10 C 0.16 3.72 4.98 -3.36 -0.02 3.71 16 11 C 0.04 0.80 5.64 -3.46 -0.02 0.78 16 12 N -0.53 -9.12 4.52 -234.02 -1.06 -10.18 16 13 C 0.06 0.87 4.30 -3.82 -0.02 0.86 16 14 C -0.12 -1.42 3.01 -88.61 -0.27 -1.69 16 15 H 0.09 1.11 6.22 -51.93 -0.32 0.79 16 16 C -0.15 -1.48 6.60 -25.20 -0.17 -1.65 16 17 C 0.05 0.49 7.70 37.73 0.29 0.78 16 18 O -0.39 -5.20 11.52 -35.23 -0.41 -5.61 16 19 C 0.06 0.82 7.06 38.21 0.27 1.09 16 20 C 0.04 0.74 5.46 -3.70 -0.02 0.72 16 21 C 0.15 3.24 6.69 -3.60 -0.02 3.22 16 22 H 0.27 8.19 7.06 -40.82 -0.29 7.90 16 23 H 0.02 0.60 7.93 -51.93 -0.41 0.19 16 24 H 0.08 2.11 6.33 -51.93 -0.33 1.78 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 1.06 8.01 -51.93 -0.42 0.64 16 27 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 28 H 0.03 0.42 8.13 -51.93 -0.42 -0.01 16 29 H 0.07 0.66 7.86 -51.93 -0.41 0.25 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.37 8.14 -51.92 -0.42 0.94 16 34 H 0.06 0.77 7.98 -51.93 -0.41 0.35 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 1.00 6.03 -51.93 -0.31 0.69 16 37 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 294.55 15.07 4.44 4.44 Total: -1.00 -30.45 294.55 -8.45 -38.91 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.32 Total: -2.31 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -0.19 Total: -3.04 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.87 Total: -52.51 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.41 Total: -5.61 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.10 Total: 20.12 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.45 -8.45 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.896 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds