Wall clock time and date at job start Sun Mar 29 2020 22:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00387 * 2 1 4 4 H 1.48497 * 109.46709 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47341 * 239.99690 * 3 2 1 6 6 H 1.48503 * 109.46880 * 119.99769 * 3 2 1 7 7 C 1.38811 * 119.99732 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00696 * 211.12592 * 7 2 1 9 9 N 1.36936 * 119.99891 * 31.12869 * 7 2 1 10 10 C 1.47082 * 120.88015 * 23.16856 * 9 7 2 11 11 C 1.53701 * 108.27558 * 128.75414 * 10 9 7 12 12 N 1.46902 * 109.25740 * 54.08580 * 11 10 9 13 13 C 1.46896 * 110.99933 * 172.60999 * 12 11 10 14 14 C 1.53007 * 109.46949 * 188.63787 * 13 12 11 15 15 H 1.09005 * 110.80200 * 305.55687 * 14 13 12 16 16 C 1.54809 * 110.90752 * 181.93313 * 14 13 12 17 17 C 1.54100 * 104.18336 * 220.92005 * 16 14 13 18 18 O 1.43738 * 107.29805 * 357.96407 * 17 16 14 19 19 C 1.44379 * 106.97129 * 26.51708 * 18 17 16 20 20 C 1.46903 * 111.26589 * 296.75223 * 12 11 10 21 21 C 1.47079 * 120.88351 * 203.44329 * 9 7 2 22 22 H 0.96991 * 119.99880 * 185.74068 * 1 2 3 23 23 H 1.09005 * 109.62644 * 248.51869 * 10 9 7 24 24 H 1.08997 * 109.63268 * 9.10447 * 10 9 7 25 25 H 1.08992 * 109.64990 * 294.07880 * 11 10 9 26 26 H 1.09007 * 109.44183 * 173.95570 * 11 10 9 27 27 H 1.09003 * 109.47095 * 308.62545 * 13 12 11 28 28 H 1.08991 * 109.47559 * 68.63813 * 13 12 11 29 29 H 1.09000 * 110.48782 * 339.58935 * 16 14 13 30 30 H 1.08995 * 110.48899 * 102.11094 * 16 14 13 31 31 H 1.09000 * 109.87982 * 117.39507 * 17 16 14 32 32 H 1.09005 * 109.87381 * 238.38980 * 17 16 14 33 33 H 1.09010 * 110.61776 * 201.43559 * 19 18 17 34 34 H 1.09001 * 110.61759 * 78.44363 * 19 18 17 35 35 H 1.08999 * 109.49460 * 303.15095 * 20 12 11 36 36 H 1.09003 * 109.49402 * 183.06426 * 20 12 11 37 37 H 1.09003 * 109.63035 * 350.89933 * 21 9 7 38 38 H 1.08998 * 109.62805 * 111.28029 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1041 1.6963 -1.2124 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 2.9736 -1.2695 0.4840 9 7 1.4733 -2.3029 -0.6120 10 6 0.4671 -2.1596 -1.6752 11 6 0.9221 -2.9915 -2.8848 12 7 1.1777 -4.3726 -2.4545 13 6 1.4452 -5.2424 -3.6076 14 6 1.4927 -6.7005 -3.1465 15 1 2.2114 -6.8273 -2.3368 16 6 1.8211 -7.6436 -4.3294 17 6 0.8920 -8.8544 -4.1162 18 8 0.1596 -8.6225 -2.9013 19 6 0.0859 -7.1920 -2.7203 20 6 2.2781 -4.4330 -1.4831 21 6 1.8832 -3.6600 -0.2202 22 1 -0.4849 -0.8358 0.0840 23 1 -0.4967 -2.5232 -1.3185 24 1 0.3831 -1.1111 -1.9610 25 1 1.8351 -2.5652 -3.3003 26 1 0.1398 -2.9861 -3.6439 27 1 0.6528 -5.1206 -4.3461 28 1 2.4022 -4.9710 -4.0532 29 1 1.6003 -7.1559 -5.2789 30 1 2.8662 -7.9511 -4.2934 31 1 0.2009 -8.9435 -4.9544 32 1 1.4846 -9.7649 -4.0263 33 1 -0.1062 -6.9467 -1.6756 34 1 -0.6820 -6.7627 -3.3638 35 1 3.1722 -3.9865 -1.9181 36 1 2.4789 -5.4729 -1.2252 37 1 2.7359 -3.6040 0.4564 38 1 1.0541 -4.1638 0.2766 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:37 Heat of formation + Delta-G solvation = -39.822760 kcal Electronic energy + Delta-G solvation = -17994.591323 eV Core-core repulsion = 15257.643220 eV Total energy + Delta-G solvation = -2736.948103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67219 -39.47298 -36.64475 -34.02543 -32.74580 -31.66797 -30.26710 -28.36034 -25.92241 -24.53869 -24.21647 -23.11405 -21.27796 -20.80476 -19.37689 -17.68621 -16.87628 -16.52770 -16.27689 -16.06800 -15.69420 -15.45095 -15.30799 -15.22448 -14.87461 -14.36003 -13.85927 -13.40434 -13.13430 -12.71236 -12.52681 -12.48361 -12.31982 -12.16480 -12.00075 -11.89972 -11.88663 -11.83435 -11.42553 -11.22829 -10.61475 -10.43936 -9.36666 -8.94074 -8.32176 -5.34794 1.57849 1.64488 1.84518 2.64169 2.82033 3.08387 3.15113 3.52171 3.66598 3.77206 3.96844 4.13918 4.20595 4.20661 4.34776 4.40891 4.41471 4.52169 4.53822 4.68585 4.70471 4.76360 4.81421 4.86348 4.93677 4.97677 5.01095 5.09422 5.12177 5.25875 5.30970 5.78203 5.95298 6.08386 6.17352 6.34512 7.00879 7.76220 8.22090 8.95003 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.058490 B = 0.005042 C = 0.005024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.598317 B = 5552.358496 C = 5572.335129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.072 4.072 3 Si 1.111 2.889 4 H -0.291 1.291 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.365 4.365 8 H 0.051 0.949 9 N -0.620 5.620 10 C 0.163 3.837 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.069 3.931 14 C -0.113 4.113 15 H 0.081 0.919 16 C -0.144 4.144 17 C 0.041 3.959 18 O -0.408 6.408 19 C 0.063 3.937 20 C 0.056 3.944 21 C 0.145 3.855 22 H 0.252 0.748 23 H 0.006 0.994 24 H 0.048 0.952 25 H 0.022 0.978 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.022 0.978 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -14.453 -10.752 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.269 4.269 3 Si 0.935 3.065 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.494 4.494 8 H 0.069 0.931 9 N -0.345 5.345 10 C 0.037 3.963 11 C -0.073 4.073 12 N -0.264 5.264 13 C -0.058 4.058 14 C -0.132 4.132 15 H 0.099 0.901 16 C -0.182 4.182 17 C -0.035 4.035 18 O -0.328 6.328 19 C -0.013 4.013 20 C -0.073 4.073 21 C 0.020 3.980 22 H 0.061 0.939 23 H 0.024 0.976 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 3.530 -13.137 -10.436 17.145 hybrid contribution 0.719 -1.016 -0.002 1.245 sum 4.249 -14.153 -10.438 18.092 Atomic orbital electron populations 1.70912 1.07668 1.29106 1.49728 1.27093 0.96321 1.04589 0.98859 0.82922 0.74015 0.72308 0.77254 1.21652 1.20750 1.20228 1.20204 1.01073 0.91400 1.36706 0.93129 1.44488 1.48745 1.01680 1.39630 1.20941 0.90219 0.97400 0.87763 1.22514 0.99438 0.88225 0.97092 1.61895 1.41846 1.08399 1.14289 1.22107 1.00517 0.91210 0.92002 1.22694 0.97806 0.93972 0.98769 0.90091 1.22949 1.01305 0.95262 0.98660 1.23311 0.94090 0.99017 0.87074 1.88836 1.76493 1.23853 1.43619 1.23461 0.96353 0.79622 1.01850 1.22462 0.91307 1.00171 0.93394 1.21099 0.97137 0.84948 0.94838 0.93852 0.97597 0.93325 0.95983 0.89464 0.89667 0.94343 0.89268 0.89235 0.91515 0.88828 0.90008 0.91914 0.96002 0.88805 0.92794 0.96644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.49 12.41 21.65 0.27 -57.22 16 2 C -0.07 -4.13 4.55 84.86 0.39 -3.74 16 3 Si 1.11 51.20 30.02 68.60 2.06 53.26 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.36 -20.88 9.50 84.03 0.80 -20.08 16 8 H 0.05 2.90 7.97 -2.91 -0.02 2.88 16 9 N -0.62 -32.09 2.92 -697.22 -2.04 -34.13 16 10 C 0.16 7.87 4.98 86.50 0.43 8.30 16 11 C 0.06 2.11 5.64 86.54 0.49 2.60 16 12 N -0.54 -17.52 4.52 -894.29 -4.04 -21.56 16 13 C 0.07 1.66 4.30 86.31 0.37 2.03 16 14 C -0.11 -2.42 3.01 -9.49 -0.03 -2.45 16 15 H 0.08 1.84 6.22 -2.38 -0.01 1.82 16 16 C -0.14 -2.25 6.60 31.58 0.21 -2.04 16 17 C 0.04 0.72 7.70 72.35 0.56 1.27 16 18 O -0.41 -10.27 11.52 -148.98 -1.72 -11.99 16 19 C 0.06 1.54 7.06 72.66 0.51 2.05 16 20 C 0.06 1.90 5.46 86.38 0.47 2.38 16 21 C 0.15 6.26 6.69 86.35 0.58 6.84 16 22 H 0.25 16.00 7.06 -92.71 -0.65 15.35 16 23 H 0.01 0.31 7.93 -2.38 -0.02 0.29 16 24 H 0.05 2.63 6.33 -2.39 -0.02 2.62 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 2.80 8.01 -2.38 -0.02 2.78 16 27 H 0.08 1.86 7.90 -2.39 -0.02 1.84 16 28 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 29 H 0.09 1.18 7.86 -2.39 -0.02 1.16 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.06 1.47 7.98 -2.39 -0.02 1.45 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 2.68 6.03 -2.39 -0.01 2.67 16 37 H 0.05 2.29 7.94 -2.39 -0.02 2.27 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -66.56 294.55 0.43 -66.13 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.13 Total: 8.35 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.77 Total: -2.84 kcal Atomic # 7 Polarization: -107.10 SS G_CDS: -5.81 Total: -112.91 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.72 Total: -11.99 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.06 Total: 53.26 kcal Total: -66.56 0.43 -66.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.306 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds