Wall clock time and date at job start Sun Mar 29 2020 22:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00092 * 2 1 4 4 H 1.48496 * 109.46985 * 264.95350 * 3 2 1 5 5 H 1.48505 * 109.47266 * 144.95450 * 3 2 1 6 6 H 1.48499 * 109.47209 * 24.95220 * 3 2 1 7 7 C 1.38813 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99973 * 196.74786 * 7 2 1 9 9 N 1.36940 * 120.00450 * 16.75089 * 7 2 1 10 10 C 1.47080 * 120.87751 * 26.83034 * 9 7 2 11 11 C 1.53689 * 108.27479 * 128.75731 * 10 9 7 12 12 N 1.46896 * 109.26299 * 54.08170 * 11 10 9 13 13 C 1.46895 * 111.00451 * 172.60799 * 12 11 10 14 14 H 1.08993 * 110.43630 * 63.73273 * 13 12 11 15 15 C 1.54890 * 110.48419 * 186.41870 * 13 12 11 16 16 C 1.54895 * 102.74955 * 156.62053 * 15 13 12 17 17 C 1.54265 * 104.19095 * 322.05461 * 16 15 13 18 18 C 1.53871 * 106.60255 * 23.61185 * 17 16 15 19 19 H 1.09003 * 110.03407 * 119.28069 * 18 17 16 20 20 O 1.42903 * 110.03355 * 240.71331 * 18 17 16 21 21 C 1.46903 * 111.26494 * 296.75841 * 12 11 10 22 22 C 1.47075 * 120.88377 * 207.10687 * 9 7 2 23 23 H 0.96998 * 120.00006 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.62374 * 248.52346 * 10 9 7 25 25 H 1.08997 * 109.62992 * 9.10492 * 10 9 7 26 26 H 1.09004 * 109.65063 * 294.07554 * 11 10 9 27 27 H 1.09003 * 109.41986 * 173.94585 * 11 10 9 28 28 H 1.09003 * 110.75920 * 274.93273 * 15 13 12 29 29 H 1.08997 * 110.76207 * 38.30413 * 15 13 12 30 30 H 1.09000 * 110.48942 * 203.37943 * 16 15 13 31 31 H 1.08998 * 110.59829 * 80.78542 * 16 15 13 32 32 H 1.09002 * 110.03256 * 264.32137 * 17 16 15 33 33 H 1.09007 * 110.03330 * 142.89313 * 17 16 15 34 34 H 0.96701 * 113.99441 * 297.16764 * 20 18 17 35 35 H 1.08992 * 109.49446 * 303.13759 * 21 12 11 36 36 H 1.09005 * 109.48932 * 183.05868 * 21 12 11 37 37 H 1.09003 * 109.63011 * 350.90325 * 22 9 7 38 38 H 1.09006 * 109.62373 * 111.47265 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6043 1.9847 -1.3946 5 1 3.4904 1.4732 0.8040 6 1 1.3984 2.6811 0.5906 7 6 2.0102 -1.2022 0.0005 8 1 3.0559 -1.2220 0.2701 9 7 1.3691 -2.3631 -0.3407 10 6 0.2031 -2.3461 -1.2371 11 6 0.4447 -3.3657 -2.3615 12 7 0.7541 -4.6745 -1.7706 13 6 0.8197 -5.7164 -2.8040 14 1 1.6372 -5.5151 -3.4961 15 6 0.9860 -7.1132 -2.1556 16 6 0.4371 -8.0646 -3.2477 17 6 -0.7633 -7.3019 -3.8452 18 6 -0.5201 -5.8089 -3.5632 19 1 -0.4566 -5.2572 -4.5011 20 8 -1.5769 -5.2846 -2.7567 21 6 1.9987 -4.6266 -0.9916 22 6 1.8246 -3.6594 0.1841 23 1 -0.4850 0.8400 -0.0004 24 1 -0.6923 -2.6181 -0.6781 25 1 0.0836 -1.3502 -1.6635 26 1 1.2810 -3.0386 -2.9793 27 1 -0.4520 -3.4468 -2.9759 28 1 2.0364 -7.3226 -1.9533 29 1 0.3935 -7.1890 -1.2439 30 1 0.1093 -9.0051 -2.8048 31 1 1.1922 -8.2468 -4.0124 32 1 -1.6875 -7.6266 -3.3671 33 1 -0.8179 -7.4747 -4.9202 34 1 -2.4462 -5.3149 -3.1793 35 1 2.8133 -4.2820 -1.6284 36 1 2.2290 -5.6223 -0.6125 37 1 2.7775 -3.5321 0.6978 38 1 1.0819 -4.0551 0.8770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070994884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:21 Heat of formation + Delta-G solvation = -17.876423 kcal Electronic energy + Delta-G solvation = -18410.045726 eV Core-core repulsion = 15674.049288 eV Total energy + Delta-G solvation = -2735.996438 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.30646 -36.90793 -34.77202 -33.60613 -31.07320 -29.79138 -27.89312 -27.47313 -25.17757 -22.61483 -22.50766 -20.31115 -19.70058 -18.99774 -17.29569 -16.48788 -15.73519 -14.94442 -14.60161 -14.31719 -14.06921 -13.64083 -13.29230 -13.13388 -12.95344 -12.48421 -12.32270 -11.71103 -11.43988 -11.13415 -11.01309 -10.87864 -10.79555 -10.64275 -10.48822 -10.24680 -10.11639 -9.88181 -9.71120 -9.55667 -9.36184 -8.40449 -7.55879 -6.54235 -5.68319 -3.09664 3.43001 3.49087 3.50497 4.26442 4.53940 4.58179 4.66147 4.76104 5.04935 5.35081 5.45759 5.47772 5.52044 5.59068 5.65869 5.83329 5.85225 5.95610 5.99860 6.08307 6.12188 6.24466 6.29542 6.39618 6.50284 6.51978 6.71130 6.90318 7.07142 7.42095 7.75966 7.83221 7.84800 7.99595 8.04781 8.54074 9.31623 9.95376 10.55089 11.40040 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047606 B = 0.006165 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.023202 B = 4540.685706 C = 4861.181364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.597 5.597 10 C 0.182 3.818 11 C 0.040 3.960 12 N -0.506 5.506 13 C 0.083 3.917 14 H 0.044 0.956 15 C -0.113 4.113 16 C -0.121 4.121 17 C -0.155 4.155 18 C 0.108 3.892 19 H 0.048 0.952 20 O -0.531 6.531 21 C 0.041 3.959 22 C 0.150 3.850 23 H 0.253 0.747 24 H 0.027 0.973 25 H 0.084 0.916 26 H 0.013 0.987 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.363 0.637 35 H 0.022 0.978 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.744 -14.069 -8.375 16.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.206 1.206 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.320 5.320 10 C 0.057 3.943 11 C -0.089 4.089 12 N -0.231 5.231 13 C -0.026 4.026 14 H 0.061 0.939 15 C -0.151 4.151 16 C -0.159 4.159 17 C -0.193 4.193 18 C 0.048 3.952 19 H 0.065 0.935 20 O -0.333 6.333 21 C -0.088 4.088 22 C 0.023 3.977 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.102 0.898 26 H 0.031 0.969 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.208 0.792 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.727 -13.919 -7.602 15.876 hybrid contribution 0.660 0.940 -1.099 1.590 sum -0.067 -12.978 -8.701 15.625 Atomic orbital electron populations 1.70043 1.05161 1.25314 1.54294 1.25025 0.95297 0.98253 1.01255 0.86312 0.79016 0.83780 0.77684 1.21565 1.20582 1.21764 1.19205 0.92417 0.84876 1.41457 0.91793 1.44170 1.34287 1.01292 1.52276 1.20906 0.88781 0.96177 0.88476 1.22952 0.98403 0.89127 0.98424 1.61922 1.33265 1.05083 1.22788 1.22534 0.93839 0.93174 0.93089 0.93870 1.22540 1.00620 0.93144 0.98809 1.22247 0.97202 0.98265 0.98166 1.22918 0.99618 0.96296 1.00479 1.22365 0.88568 0.91750 0.92539 0.93455 1.86887 1.17441 1.84632 1.44366 1.22655 0.89902 0.99224 0.97030 1.20951 0.97508 0.86566 0.92640 0.93713 0.95451 0.89795 0.96916 0.91155 0.91960 0.90020 0.91644 0.91935 0.90795 0.91898 0.79222 0.95987 0.92130 0.92916 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 11.15 55.49 0.62 -26.58 16 2 C 0.00 0.00 4.94 -17.43 -0.09 -0.09 16 3 Si 0.90 22.32 29.59 -169.99 -5.03 17.29 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.25 -7.17 9.63 -15.06 -0.14 -7.32 16 8 H 0.06 1.80 7.88 -52.48 -0.41 1.38 16 9 N -0.60 -16.01 3.03 -171.74 -0.52 -16.53 16 10 C 0.18 4.71 5.44 -3.37 -0.02 4.69 16 11 C 0.04 0.85 5.17 -3.47 -0.02 0.83 16 12 N -0.51 -9.75 3.97 -224.08 -0.89 -10.64 16 13 C 0.08 1.28 2.53 -66.05 -0.17 1.11 16 14 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 15 C -0.11 -1.48 5.32 -24.73 -0.13 -1.61 16 16 C -0.12 -1.26 6.83 -25.07 -0.17 -1.43 16 17 C -0.15 -1.62 6.61 -25.62 -0.17 -1.79 16 18 C 0.11 1.44 3.25 -25.61 -0.08 1.35 16 19 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 20 O -0.53 -7.92 10.82 -35.23 -0.38 -8.30 16 21 C 0.04 0.80 5.48 -3.70 -0.02 0.78 16 22 C 0.15 3.42 6.69 -3.61 -0.02 3.40 16 23 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 2.37 6.13 -51.93 -0.32 2.05 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 1.40 5.84 -51.93 -0.30 1.10 16 28 H 0.06 0.76 7.78 -51.93 -0.40 0.36 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.75 7.96 -51.93 -0.41 0.34 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.36 3.73 9.11 45.56 0.42 4.14 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 1.02 6.75 -51.93 -0.35 0.67 16 37 H 0.05 1.15 7.95 -51.93 -0.41 0.73 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 290.90 15.07 4.38 4.38 Total: -1.00 -32.12 290.90 -8.41 -40.54 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.56 Total: -0.09 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.03 Total: -0.07 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.79 Total: -53.75 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.38 Total: -8.30 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.12 -8.41 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.660 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds