Wall clock time and date at job start Sun Mar 29 2020 22:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00092 * 2 1 4 4 H 1.48496 * 109.46985 * 264.95350 * 3 2 1 5 5 H 1.48505 * 109.47266 * 144.95450 * 3 2 1 6 6 H 1.48499 * 109.47209 * 24.95220 * 3 2 1 7 7 C 1.38813 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99973 * 196.74786 * 7 2 1 9 9 N 1.36940 * 120.00450 * 16.75089 * 7 2 1 10 10 C 1.47080 * 120.87751 * 26.83034 * 9 7 2 11 11 C 1.53689 * 108.27479 * 128.75731 * 10 9 7 12 12 N 1.46896 * 109.26299 * 54.08170 * 11 10 9 13 13 C 1.46895 * 111.00451 * 172.60799 * 12 11 10 14 14 H 1.08993 * 110.43630 * 63.73273 * 13 12 11 15 15 C 1.54890 * 110.48419 * 186.41870 * 13 12 11 16 16 C 1.54895 * 102.74955 * 156.62053 * 15 13 12 17 17 C 1.54265 * 104.19095 * 322.05461 * 16 15 13 18 18 C 1.53871 * 106.60255 * 23.61185 * 17 16 15 19 19 H 1.09003 * 110.03407 * 119.28069 * 18 17 16 20 20 O 1.42903 * 110.03355 * 240.71331 * 18 17 16 21 21 C 1.46903 * 111.26494 * 296.75841 * 12 11 10 22 22 C 1.47075 * 120.88377 * 207.10687 * 9 7 2 23 23 H 0.96998 * 120.00006 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.62374 * 248.52346 * 10 9 7 25 25 H 1.08997 * 109.62992 * 9.10492 * 10 9 7 26 26 H 1.09004 * 109.65063 * 294.07554 * 11 10 9 27 27 H 1.09003 * 109.41986 * 173.94585 * 11 10 9 28 28 H 1.09003 * 110.75920 * 274.93273 * 15 13 12 29 29 H 1.08997 * 110.76207 * 38.30413 * 15 13 12 30 30 H 1.09000 * 110.48942 * 203.37943 * 16 15 13 31 31 H 1.08998 * 110.59829 * 80.78542 * 16 15 13 32 32 H 1.09002 * 110.03256 * 264.32137 * 17 16 15 33 33 H 1.09007 * 110.03330 * 142.89313 * 17 16 15 34 34 H 0.96701 * 113.99441 * 297.16764 * 20 18 17 35 35 H 1.08992 * 109.49446 * 303.13759 * 21 12 11 36 36 H 1.09005 * 109.48932 * 183.05868 * 21 12 11 37 37 H 1.09003 * 109.63011 * 350.90325 * 22 9 7 38 38 H 1.09006 * 109.62373 * 111.47265 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6043 1.9847 -1.3946 5 1 3.4904 1.4732 0.8040 6 1 1.3984 2.6811 0.5906 7 6 2.0102 -1.2022 0.0005 8 1 3.0559 -1.2220 0.2701 9 7 1.3691 -2.3631 -0.3407 10 6 0.2031 -2.3461 -1.2371 11 6 0.4447 -3.3657 -2.3615 12 7 0.7541 -4.6745 -1.7706 13 6 0.8197 -5.7164 -2.8040 14 1 1.6372 -5.5151 -3.4961 15 6 0.9860 -7.1132 -2.1556 16 6 0.4371 -8.0646 -3.2477 17 6 -0.7633 -7.3019 -3.8452 18 6 -0.5201 -5.8089 -3.5632 19 1 -0.4566 -5.2572 -4.5011 20 8 -1.5769 -5.2846 -2.7567 21 6 1.9987 -4.6266 -0.9916 22 6 1.8246 -3.6594 0.1841 23 1 -0.4850 0.8400 -0.0004 24 1 -0.6923 -2.6181 -0.6781 25 1 0.0836 -1.3502 -1.6635 26 1 1.2810 -3.0386 -2.9793 27 1 -0.4520 -3.4468 -2.9759 28 1 2.0364 -7.3226 -1.9533 29 1 0.3935 -7.1890 -1.2439 30 1 0.1093 -9.0051 -2.8048 31 1 1.1922 -8.2468 -4.0124 32 1 -1.6875 -7.6266 -3.3671 33 1 -0.8179 -7.4747 -4.9202 34 1 -2.4462 -5.3149 -3.1793 35 1 2.8133 -4.2820 -1.6284 36 1 2.2290 -5.6223 -0.6125 37 1 2.7775 -3.5321 0.6978 38 1 1.0819 -4.0551 0.8770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070994884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:21 Heat of formation + Delta-G solvation = -41.355672 kcal Electronic energy + Delta-G solvation = -18411.063863 eV Core-core repulsion = 15674.049288 eV Total energy + Delta-G solvation = -2737.014575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56201 -38.48908 -36.06433 -35.20463 -33.04092 -31.60012 -29.32294 -28.58347 -26.89403 -24.44812 -24.24569 -21.31283 -21.08786 -20.63616 -18.86742 -18.07677 -17.13062 -16.59503 -15.97088 -15.63830 -15.58276 -15.25245 -15.21750 -14.69959 -14.49240 -14.08215 -13.44939 -13.27394 -13.04861 -12.70470 -12.56347 -12.44680 -12.22571 -12.05255 -11.98610 -11.96788 -11.65987 -11.46938 -11.28788 -11.09498 -10.68448 -10.58401 -9.12815 -8.66657 -7.86907 -5.33197 1.45545 1.47508 1.56363 2.50465 2.96236 3.27197 3.50416 3.69682 3.72134 3.73467 4.13674 4.32481 4.36227 4.43169 4.44136 4.47943 4.60857 4.67110 4.72650 4.78413 4.84536 4.93686 5.04785 5.09982 5.14040 5.17538 5.22646 5.28611 5.39117 5.48905 5.60406 5.69950 6.28661 6.39268 6.39648 7.11744 7.12957 7.83531 8.39419 9.19719 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.047606 B = 0.006165 C = 0.005759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.023202 B = 4540.685706 C = 4861.181364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.053 4.053 3 Si 0.973 3.027 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.293 1.293 7 C -0.267 4.267 8 H 0.068 0.932 9 N -0.615 5.615 10 C 0.193 3.807 11 C 0.060 3.940 12 N -0.517 5.517 13 C 0.073 3.927 14 H 0.047 0.953 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.146 4.146 18 C 0.104 3.896 19 H 0.053 0.947 20 O -0.561 6.561 21 C 0.053 3.947 22 C 0.145 3.855 23 H 0.251 0.749 24 H -0.007 1.007 25 H 0.053 0.947 26 H 0.004 0.996 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.381 0.619 35 H 0.018 0.982 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 -15.665 -9.596 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.210 1.210 5 H -0.193 1.193 6 H -0.219 1.219 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.340 5.340 10 C 0.067 3.933 11 C -0.069 4.069 12 N -0.242 5.242 13 C -0.036 4.036 14 H 0.064 0.936 15 C -0.148 4.148 16 C -0.152 4.152 17 C -0.184 4.184 18 C 0.044 3.956 19 H 0.071 0.929 20 O -0.367 6.367 21 C -0.076 4.076 22 C 0.019 3.981 23 H 0.060 0.940 24 H 0.012 0.988 25 H 0.071 0.929 26 H 0.023 0.977 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.229 0.771 35 H 0.036 0.964 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 0.163 -15.555 -8.834 17.890 hybrid contribution 0.357 1.391 -0.679 1.588 sum 0.520 -14.165 -9.513 17.070 Atomic orbital electron populations 1.70216 1.06782 1.25904 1.55420 1.25863 0.96116 1.01653 1.01180 0.85209 0.77909 0.79091 0.77776 1.21041 1.19293 1.21924 1.19567 0.92816 0.86008 1.41323 0.91472 1.44457 1.34307 1.02288 1.52918 1.20620 0.87530 0.95936 0.89214 1.22576 0.98698 0.89306 0.96338 1.61846 1.33249 1.04697 1.24362 1.22775 0.95477 0.92833 0.92519 0.93559 1.22511 1.01141 0.92297 0.98876 1.22251 0.97390 0.98026 0.97557 1.22846 0.99792 0.93798 1.01967 1.22468 0.87193 0.93955 0.91957 0.92888 1.86816 1.18961 1.85137 1.45737 1.22490 0.89886 0.99632 0.95623 1.21109 0.97191 0.85722 0.94043 0.94045 0.98843 0.92897 0.97733 0.89824 0.91005 0.91826 0.90218 0.90371 0.90474 0.89682 0.77091 0.96393 0.89029 0.92178 0.97061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.18 11.15 21.65 0.24 -57.94 16 2 C -0.05 -3.10 4.94 84.86 0.42 -2.68 16 3 Si 0.97 46.44 29.59 68.60 2.03 48.47 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.27 -15.59 9.63 84.03 0.81 -14.78 16 8 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 9 N -0.62 -33.82 3.03 -697.25 -2.11 -35.93 16 10 C 0.19 10.35 5.44 86.50 0.47 10.82 16 11 C 0.06 2.58 5.17 86.54 0.45 3.03 16 12 N -0.52 -19.56 3.97 -862.85 -3.42 -22.98 16 13 C 0.07 2.09 2.53 45.99 0.12 2.21 16 14 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 15 C -0.11 -2.59 5.32 31.89 0.17 -2.42 16 16 C -0.11 -1.95 6.83 31.67 0.22 -1.73 16 17 C -0.15 -2.54 6.61 31.32 0.21 -2.34 16 18 C 0.10 2.54 3.25 31.32 0.10 2.64 16 19 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 20 O -0.56 -16.10 10.82 -148.98 -1.61 -17.71 16 21 C 0.05 2.00 5.48 86.38 0.47 2.47 16 22 C 0.15 6.66 6.69 86.35 0.58 7.24 16 23 H 0.25 14.95 8.31 -92.71 -0.77 14.17 16 24 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 25 H 0.05 3.13 6.13 -2.39 -0.01 3.11 16 26 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 27 H 0.08 3.34 5.84 -2.39 -0.01 3.33 16 28 H 0.07 1.53 7.78 -2.39 -0.02 1.51 16 29 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.32 7.96 -2.39 -0.02 1.30 16 33 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.38 7.36 9.11 -74.06 -0.67 6.68 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.09 2.89 6.75 -2.38 -0.02 2.87 16 37 H 0.06 2.61 7.95 -2.39 -0.02 2.59 16 38 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -70.46 290.90 -0.51 -70.97 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.36 Total: 10.67 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 4.01 Total: 4.45 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -5.29 Total: -116.85 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -1.61 Total: -17.71 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -70.46 -0.51 -70.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070994884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.618 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds