Wall clock time and date at job start Sun Mar 29 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00250 * 2 1 4 4 C 1.52992 * 109.47577 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47526 * 66.77329 * 4 3 2 6 6 C 1.46909 * 111.00003 * 286.71352 * 5 4 3 7 7 C 1.50697 * 109.47247 * 171.10146 * 6 5 4 8 8 H 1.07994 * 119.99872 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99796 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99695 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00159 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.46965 * 90.00182 * 11 9 7 13 13 H 1.48500 * 109.46730 * 209.99922 * 11 9 7 14 14 H 1.48494 * 109.46990 * 329.99927 * 11 9 7 15 15 C 1.46900 * 111.00316 * 162.76019 * 5 4 3 16 16 C 1.50698 * 109.46868 * 294.60629 * 15 5 4 17 17 C 1.41376 * 126.79862 * 95.36728 * 16 15 5 18 18 C 1.35458 * 103.98626 * 180.26387 * 17 16 15 19 19 O 1.34046 * 106.44187 * 359.97438 * 18 17 16 20 20 N 1.20918 * 111.56863 * 359.97438 * 19 18 17 21 21 H 1.08998 * 109.46810 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47030 * 299.99777 * 1 2 3 23 23 H 1.09001 * 109.46907 * 59.99497 * 1 2 3 24 24 H 1.09001 * 109.47300 * 59.99905 * 3 2 1 25 25 H 1.09003 * 109.46992 * 300.00460 * 3 2 1 26 26 H 1.09008 * 109.47075 * 306.77409 * 4 3 2 27 27 H 1.09001 * 109.47503 * 186.77788 * 4 3 2 28 28 H 1.09001 * 109.47065 * 291.10640 * 6 5 4 29 29 H 1.09003 * 109.46898 * 51.10017 * 6 5 4 30 30 H 0.97007 * 119.99856 * 179.97438 * 10 9 7 31 31 H 1.09007 * 109.47030 * 174.61061 * 15 5 4 32 32 H 1.08997 * 109.46981 * 54.61096 * 15 5 4 33 33 H 1.07995 * 128.01175 * 0.23664 * 17 16 15 34 34 H 1.08000 * 126.77514 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9800 0.6018 -1.2736 6 6 3.6695 -0.8329 -1.3327 7 6 3.9368 -1.3479 -2.7235 8 1 4.3005 -0.6766 -3.4872 9 6 3.7160 -2.6759 -3.0211 10 7 3.9488 -3.1252 -4.2350 11 14 3.0847 -3.8366 -1.7005 12 1 1.5998 -3.8432 -1.7160 13 1 3.5886 -5.2082 -1.9652 14 1 3.5640 -3.3811 -0.3709 15 6 5.4136 0.8394 -1.4893 16 6 5.6590 2.3175 -1.6508 17 6 6.0519 3.2259 -0.6413 18 6 6.1311 4.4156 -1.2843 19 8 5.8044 4.1785 -2.5625 20 7 5.5471 3.0114 -2.7465 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6887 1.8464 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 3.8494 0.5425 0.8223 27 1 3.9783 2.1733 0.1206 28 1 4.2954 -1.3698 -0.6198 29 1 2.6198 -0.9879 -1.0833 30 1 3.7937 -4.0596 -4.4443 31 1 5.7370 0.3169 -2.3897 32 1 5.9762 0.4691 -0.6324 33 1 6.2439 3.0195 0.4012 34 1 6.4037 5.3671 -0.8523 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072690830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:09 Heat of formation + Delta-G solvation = 33.072202 kcal Electronic energy + Delta-G solvation = -17592.618065 eV Core-core repulsion = 14722.997831 eV Total energy + Delta-G solvation = -2869.620234 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.64826 -38.11235 -36.42684 -33.64151 -32.34649 -31.43480 -29.80570 -27.94455 -26.15310 -24.89068 -22.88198 -22.04239 -21.13807 -19.71551 -17.49388 -17.28386 -16.81414 -16.07945 -15.80722 -14.96841 -14.78271 -14.50845 -13.69072 -13.65153 -13.31840 -13.06821 -12.41701 -12.28594 -11.86039 -11.51804 -11.31451 -11.14842 -10.84833 -10.72094 -10.42334 -10.29731 -9.92415 -9.73050 -9.39974 -9.33393 -8.91769 -8.42426 -7.39627 -5.95147 -3.90930 1.75327 2.53420 3.37429 3.43479 3.49419 3.51146 4.16888 4.52280 4.55403 4.71597 4.93386 5.34414 5.38559 5.39905 5.51190 5.54889 5.61981 5.69102 5.71315 5.82770 5.92870 6.01207 6.10007 6.17085 6.29297 6.56502 7.04081 7.17830 7.52369 7.81797 7.94450 8.07673 8.64383 8.74842 9.14032 9.67184 11.18040 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.020660 B = 0.008304 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.949171 B = 3371.216356 C = 4335.721987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.070 3.930 4 C 0.049 3.951 5 N -0.517 5.517 6 C 0.152 3.848 7 C -0.508 4.508 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.903 5.903 11 Si 0.876 3.124 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.266 1.266 15 C 0.131 3.869 16 C 0.034 3.966 17 C -0.236 4.236 18 C -0.076 4.076 19 O 0.096 5.904 20 N -0.344 5.344 21 H 0.081 0.919 22 H 0.032 0.968 23 H 0.040 0.960 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.076 0.924 28 H -0.016 1.016 29 H 0.069 0.931 30 H 0.262 0.738 31 H 0.109 0.891 32 H 0.045 0.955 33 H 0.166 0.834 34 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.180 13.037 11.514 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.007 4.007 4 C -0.080 4.080 5 N -0.242 5.242 6 C 0.027 3.973 7 C -0.547 4.547 8 H 0.097 0.903 9 C -0.133 4.133 10 N -0.543 5.543 11 Si 0.703 3.297 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.191 1.191 15 C 0.003 3.997 16 C -0.126 4.126 17 C -0.258 4.258 18 C -0.157 4.157 19 O 0.028 5.972 20 N -0.047 5.047 21 H 0.099 0.901 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.094 0.906 28 H 0.002 0.998 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.183 0.817 34 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -0.310 12.613 9.754 15.948 hybrid contribution 0.074 -0.804 2.250 2.390 sum -0.235 11.809 12.004 16.841 Atomic orbital electron populations 1.22690 0.82360 1.02383 0.99257 1.88075 1.18717 1.27528 1.94969 1.22512 0.93849 0.84998 0.99339 1.22187 0.93715 0.99606 0.92450 1.61966 1.13541 1.18757 1.29946 1.20588 0.98249 0.81289 0.97206 1.21114 1.43815 0.94675 0.95076 0.90300 1.24864 0.95316 0.97967 0.95150 1.69915 1.49795 1.15321 1.19258 0.86845 0.79653 0.80182 0.83004 1.20188 1.21590 1.19121 1.20374 0.90402 0.85825 1.03102 1.23854 1.00716 0.99557 0.88455 1.22774 1.08605 0.92492 1.01912 1.25911 1.03574 1.01217 0.85015 1.84889 1.62696 1.22113 1.27487 1.73937 1.17000 0.89695 1.24031 0.90090 0.94926 0.94107 0.94028 0.92621 0.94676 0.90553 0.99804 0.91393 0.92845 0.87271 0.93740 0.81676 0.77317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -7.03 7.63 -35.23 -0.27 -7.29 16 3 C 0.07 1.15 6.24 37.15 0.23 1.38 16 4 C 0.05 0.85 5.40 -3.83 -0.02 0.83 16 5 N -0.52 -11.18 4.45 -237.51 -1.06 -12.23 16 6 C 0.15 3.82 3.56 -4.97 -0.02 3.80 16 7 C -0.51 -14.93 8.92 -34.44 -0.31 -15.24 16 8 H 0.08 2.54 7.34 -52.49 -0.39 2.16 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 11 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 15 C 0.13 2.62 5.40 -4.98 -0.03 2.60 16 16 C 0.03 0.60 6.04 -82.10 -0.50 0.10 16 17 C -0.24 -3.00 9.78 -39.38 -0.39 -3.39 16 18 C -0.08 -0.82 12.30 29.74 0.37 -0.45 16 19 O 0.10 1.43 11.20 17.16 0.19 1.62 16 20 N -0.34 -6.41 12.07 33.42 0.40 -6.01 16 21 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.04 0.61 8.04 -51.92 -0.42 0.19 16 27 H 0.08 1.15 5.80 -51.93 -0.30 0.85 16 28 H -0.02 -0.40 7.19 -51.93 -0.37 -0.77 16 29 H 0.07 1.75 4.37 -51.93 -0.23 1.53 16 30 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.11 2.52 6.57 -51.92 -0.34 2.18 16 32 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 33 H 0.17 1.64 8.06 -52.49 -0.42 1.21 16 34 H 0.21 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 284.20 15.07 4.28 4.28 Total: -1.00 -34.27 284.20 -4.58 -38.85 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.59 Total: -2.32 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 0.36 Total: -6.88 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.12 Total: -45.95 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.08 Total: -5.67 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.27 -4.58 -38.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072690830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.921 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds