Wall clock time and date at job start Sun Mar 29 2020 22:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00186 * 2 1 4 4 H 1.48509 * 109.47116 * 240.00156 * 3 2 1 5 5 H 1.48500 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47284 * 120.00131 * 3 2 1 7 7 C 1.37881 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00385 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47599 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47732 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47459 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99859 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00626 * 0.02562 * 13 12 11 15 15 C 1.50710 * 119.99873 * 180.02562 * 13 12 11 16 16 H 1.08998 * 110.53862 * 61.16472 * 15 13 12 17 17 C 1.54887 * 110.48448 * 298.54922 * 15 13 12 18 18 C 1.54890 * 102.91108 * 203.28543 * 17 15 13 19 19 C 1.54756 * 103.96440 * 37.92718 * 18 17 15 20 20 C 1.53877 * 106.65328 * 336.42987 * 19 18 17 21 21 H 1.08993 * 110.03066 * 119.27251 * 20 19 18 22 22 N 1.46897 * 110.07004 * 240.68805 * 20 19 18 23 23 H 0.96997 * 119.99813 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47001 * 59.99681 * 9 7 2 25 25 H 1.09004 * 109.46944 * 300.00270 * 9 7 2 26 26 H 1.09004 * 109.46897 * 59.99391 * 10 9 7 27 27 H 1.09004 * 109.47361 * 300.00221 * 10 9 7 28 28 H 1.09001 * 109.46801 * 59.99929 * 11 10 9 29 29 H 1.08999 * 109.46573 * 300.00567 * 11 10 9 30 30 H 0.97000 * 119.99626 * 0.02562 * 12 11 10 31 31 H 1.09002 * 110.75856 * 321.69453 * 17 15 13 32 32 H 1.09006 * 110.75640 * 84.88439 * 17 15 13 33 33 H 1.09005 * 110.48480 * 156.71548 * 18 17 15 34 34 H 1.08999 * 110.48784 * 279.35472 * 18 17 15 35 35 H 1.08999 * 110.01189 * 217.12441 * 19 18 17 36 36 H 1.08999 * 110.03622 * 95.75022 * 19 18 17 37 37 H 1.00897 * 110.99999 * 297.18378 * 22 20 19 38 38 H 1.00894 * 111.00805 * 61.14705 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4802 -4.9872 0.0012 12 7 2.4321 -6.1007 0.0006 13 6 1.9828 -7.3713 0.0015 14 8 0.7905 -7.5930 0.0024 15 6 2.9622 -8.5168 0.0014 16 1 3.5854 -8.4872 0.8952 17 6 3.8406 -8.4789 -1.2736 18 6 4.3064 -9.9491 -1.4169 19 6 3.0688 -10.7759 -0.9929 20 6 2.2168 -9.8643 -0.0925 21 1 1.2323 -9.7162 -0.5360 22 7 2.0822 -10.4591 1.2439 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8719 -3.6045 -0.8895 28 1 0.8532 -5.0452 -0.8886 29 1 0.8538 -5.0446 0.8914 30 1 3.3858 -5.9234 0.0002 31 1 3.2524 -8.1739 -2.1391 32 1 4.6941 -7.8151 -1.1352 33 1 4.5777 -10.1644 -2.4505 34 1 5.1460 -10.1499 -0.7515 35 1 3.3831 -11.6601 -0.4383 36 1 2.4975 -11.0710 -1.8730 37 1 1.5961 -11.3421 1.1993 38 1 2.9832 -10.5641 1.6855 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082922106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:19 Heat of formation + Delta-G solvation = -95.271491 kcal Electronic energy + Delta-G solvation = -16920.457178 eV Core-core repulsion = 14181.104638 eV Total energy + Delta-G solvation = -2739.352540 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.18059 -38.69296 -36.89828 -35.20501 -33.62998 -32.94308 -30.47368 -28.30809 -27.36010 -25.06084 -22.65577 -22.30612 -21.37699 -20.49827 -18.65960 -18.35660 -17.09230 -16.75314 -16.47583 -16.30582 -16.09748 -15.60069 -15.21646 -14.44243 -14.29750 -14.19921 -13.78405 -13.53570 -13.10875 -13.01508 -12.71339 -12.56070 -12.43233 -12.27840 -12.04504 -11.75008 -11.67460 -11.56789 -11.46688 -11.24812 -10.69238 -10.55050 -10.07415 -9.52622 -8.19409 -6.31447 1.41843 1.45265 1.53127 1.68410 2.23536 2.43304 3.14133 3.45876 3.50950 3.68273 4.04638 4.13189 4.20027 4.26194 4.41528 4.47867 4.53120 4.54706 4.59798 4.71613 4.93254 4.97353 4.99902 5.13105 5.16028 5.16501 5.30532 5.38109 5.46156 5.53563 5.69649 5.83517 6.21663 6.29945 6.60879 6.68027 6.86021 7.31244 7.38306 8.92675 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053949 B = 0.003642 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.888929 B = 7686.514702 C = 7991.621667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.129 3.871 12 N -0.715 5.715 13 C 0.512 3.488 14 O -0.588 6.588 15 C -0.100 4.100 16 H 0.122 0.878 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.153 4.153 20 C 0.100 3.900 21 H 0.064 0.936 22 N -0.851 5.851 23 H 0.263 0.737 24 H -0.009 1.009 25 H -0.010 1.010 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.415 0.585 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.349 0.651 38 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.021 -21.323 -1.528 25.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.005 3.995 12 N -0.366 5.366 13 C 0.300 3.700 14 O -0.468 6.468 15 C -0.121 4.121 16 H 0.140 0.860 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.193 4.193 20 C -0.013 4.013 21 H 0.082 0.918 22 N -0.383 5.383 23 H 0.072 0.928 24 H 0.009 0.991 25 H 0.009 0.991 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.251 0.749 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 11.589 -20.716 -1.335 23.775 hybrid contribution 0.449 0.435 -0.339 0.711 sum 12.038 -20.281 -1.674 23.644 Atomic orbital electron populations 1.70114 1.08026 1.27895 1.51609 1.26057 0.95756 1.03667 0.94717 0.85440 0.78161 0.77746 0.79327 1.18915 1.21199 1.18951 1.21660 0.93789 0.91962 1.50625 0.91406 1.18948 0.94473 0.93108 0.94951 1.21587 0.98383 0.91685 1.02158 1.21198 0.92110 0.85907 1.00288 1.45978 1.10975 1.05046 1.74643 1.21203 0.89644 0.84664 0.74491 1.90668 1.19366 1.85280 1.51457 1.22214 0.95899 0.91600 1.02412 0.86003 1.22553 0.98892 0.99142 0.94731 1.22390 0.97325 0.92805 1.02641 1.23088 0.97257 0.98699 1.00267 1.21875 0.98361 0.91930 0.89124 0.91823 1.58705 1.26564 1.32586 1.20406 0.92799 0.99068 0.99143 0.91358 0.91196 0.93549 0.93745 0.74855 0.92167 0.88416 0.90304 0.89596 0.90139 0.91752 0.83661 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.85 13.29 21.45 0.28 -57.57 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.10 -3.94 5.27 30.59 0.16 -3.78 16 11 C 0.13 4.77 5.67 86.38 0.49 5.26 16 12 N -0.71 -20.37 5.50 -463.07 -2.54 -22.91 16 13 C 0.51 15.46 7.15 87.66 0.63 16.09 16 14 O -0.59 -23.73 15.46 -3.04 -0.05 -23.77 16 15 C -0.10 -1.97 2.94 -10.46 -0.03 -2.00 16 16 H 0.12 1.96 7.92 -2.39 -0.02 1.94 16 17 C -0.12 -1.67 6.24 31.88 0.20 -1.47 16 18 C -0.11 -1.22 6.87 31.84 0.22 -1.00 16 19 C -0.15 -2.03 6.59 31.49 0.21 -1.82 16 20 C 0.10 1.99 3.39 45.64 0.15 2.15 16 21 H 0.06 1.77 6.90 -2.39 -0.02 1.76 16 22 N -0.85 -15.30 9.14 -165.68 -1.51 -16.81 16 23 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 24 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 26 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 27 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.41 8.80 8.46 -92.71 -0.78 8.01 16 31 H 0.06 1.07 8.05 -2.39 -0.02 1.05 16 32 H 0.10 1.02 8.14 -2.38 -0.02 1.01 16 33 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.81 7.92 -2.39 -0.02 0.79 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.35 5.20 9.07 -89.70 -0.81 4.39 16 38 H 0.35 4.55 8.86 -89.70 -0.80 3.75 16 Total: -1.00 -73.17 312.55 -0.26 -73.42 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -1.33 Total: 16.98 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 2.87 Total: -15.30 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -3.77 Total: -97.30 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.77 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.17 -0.26 -73.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082922106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.849 kcal (2) G-P(sol) polarization free energy of solvation -73.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds