Wall clock time and date at job start Sun Mar 29 2020 22:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48499 * 109.46826 * 270.00283 * 3 2 1 5 5 H 1.48499 * 109.47343 * 29.99663 * 3 2 1 6 6 H 1.48499 * 109.47148 * 149.99922 * 3 2 1 7 7 C 1.37881 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99395 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99961 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47187 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00035 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46862 * 180.02562 * 11 10 9 13 13 H 1.08994 * 109.16149 * 59.26072 * 12 11 10 14 14 C 1.53765 * 109.16463 * 178.47593 * 12 11 10 15 15 N 1.45638 * 107.39128 * 66.10216 * 14 12 11 16 16 C 1.46905 * 117.34595 * 179.75007 * 15 14 12 17 17 C 1.55304 * 103.36324 * 197.48460 * 16 15 14 18 18 C 1.55085 * 104.99881 * 24.05242 * 17 16 15 19 19 C 1.48938 * 108.72870 * 62.80055 * 15 14 12 20 20 H 1.08990 * 110.33715 * 52.62002 * 19 15 14 21 21 C 1.52181 * 107.07852 * 292.01477 * 19 15 14 22 22 O 1.42647 * 109.16811 * 299.99912 * 12 11 10 23 23 H 0.96996 * 120.00261 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47351 * 60.00137 * 9 7 2 25 25 H 1.08996 * 109.47610 * 299.99945 * 9 7 2 26 26 H 1.00901 * 110.99659 * 56.04353 * 10 9 7 27 27 H 1.08996 * 109.46826 * 60.00780 * 11 10 9 28 28 H 1.08994 * 109.47337 * 300.00253 * 11 10 9 29 29 H 1.09000 * 109.87594 * 306.62154 * 14 12 11 30 30 H 1.09001 * 109.86745 * 185.56904 * 14 12 11 31 31 H 1.08998 * 110.64398 * 79.01354 * 16 15 14 32 32 H 1.09002 * 110.64187 * 315.94890 * 16 15 14 33 33 H 1.09002 * 110.35533 * 142.96570 * 17 16 15 34 34 H 1.08997 * 110.35108 * 265.14468 * 17 16 15 35 35 H 1.09005 * 110.51222 * 121.59649 * 18 17 16 36 36 H 1.09000 * 110.51353 * 244.31013 * 18 17 16 37 37 H 1.09002 * 109.91998 * 180.77073 * 21 19 15 38 38 H 1.09002 * 109.92072 * 301.86443 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 2.5304 -6.0430 0.0018 13 1 3.1607 -5.9556 0.8867 14 6 1.7906 -7.3904 0.0410 15 7 1.0627 -7.5240 -1.2133 16 6 0.2763 -8.7492 -1.4099 17 6 0.0330 -8.7773 -2.9435 18 6 1.1872 -7.9364 -3.5485 19 6 2.0430 -7.5560 -2.3341 20 1 2.8016 -8.3171 -2.1522 21 6 2.6746 -6.1738 -2.4149 22 8 3.3444 -5.9400 -1.1651 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8902 26 1 2.8406 -3.5486 0.7819 27 1 0.8804 -4.9817 -0.8887 28 1 0.8808 -4.9812 0.8913 29 1 1.0926 -7.4056 0.8781 30 1 2.5085 -8.2044 0.1413 31 1 -0.6697 -8.6891 -0.8718 32 1 0.8439 -9.6248 -1.0948 33 1 0.0746 -9.8011 -3.3153 34 1 -0.9301 -8.3267 -3.1829 35 1 1.7664 -8.5337 -4.2527 36 1 0.7947 -7.0438 -4.0356 37 1 3.3939 -6.1414 -3.2333 38 1 1.9019 -5.4208 -2.5700 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085790607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:39 Heat of formation + Delta-G solvation = -35.472908 kcal Electronic energy + Delta-G solvation = -17829.980955 eV Core-core repulsion = 15093.221476 eV Total energy + Delta-G solvation = -2736.759479 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.26711 -37.01328 -34.79428 -32.98836 -32.11463 -30.19417 -29.03495 -26.67543 -24.66005 -23.86499 -21.84517 -21.24567 -20.95576 -19.33156 -16.66539 -16.34145 -15.74039 -15.51831 -15.43492 -14.60445 -14.37268 -14.11888 -13.77673 -13.37372 -12.92506 -12.65819 -12.56975 -12.33729 -11.65391 -11.38231 -11.34864 -11.19048 -11.15156 -10.86921 -10.71361 -10.60195 -10.56408 -10.03304 -9.89266 -9.33454 -9.03055 -8.40987 -8.38623 -7.12364 -5.96482 -3.97850 3.36951 3.42194 3.46653 3.82268 4.06292 4.45538 4.49428 4.65857 4.79909 4.94410 5.09220 5.20105 5.29284 5.35107 5.39224 5.43451 5.52805 5.63347 5.71264 5.75373 5.78953 5.84303 5.88758 6.01561 6.04467 6.18988 6.33211 6.66796 6.76917 7.09619 7.34134 7.50238 7.60959 7.87397 8.21798 8.51759 8.73443 9.12335 9.66776 11.14746 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.039897 B = 0.004866 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.640461 B = 5753.136241 C = 5826.738274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.195 3.805 10 N -0.682 5.682 11 C 0.039 3.961 12 C 0.102 3.898 13 H 0.097 0.903 14 C 0.027 3.973 15 N -0.522 5.522 16 C 0.043 3.957 17 C -0.121 4.121 18 C -0.114 4.114 19 C 0.024 3.976 20 H 0.055 0.945 21 C 0.079 3.921 22 O -0.366 6.366 23 H 0.260 0.740 24 H 0.026 0.974 25 H -0.017 1.017 26 H 0.325 0.675 27 H 0.078 0.922 28 H 0.020 0.980 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 -18.809 -3.774 19.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.312 5.312 11 C -0.091 4.091 12 C 0.043 3.957 13 H 0.115 0.885 14 C -0.102 4.102 15 N -0.247 5.247 16 C -0.085 4.085 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.084 4.084 20 H 0.073 0.927 21 C 0.002 3.998 22 O -0.284 6.284 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.001 0.999 26 H 0.141 0.859 27 H 0.097 0.903 28 H 0.038 0.962 29 H 0.102 0.898 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.493 -18.189 -4.416 18.776 hybrid contribution 0.149 0.054 1.093 1.104 sum 1.642 -18.135 -3.323 18.510 Atomic orbital electron populations 1.69973 1.06083 1.26654 1.51245 1.24997 0.94859 0.99329 0.95477 0.86486 0.79682 0.83048 0.78100 1.20646 1.21382 1.19851 1.21219 0.93548 0.90278 1.49875 0.91949 1.19526 0.90576 0.87480 0.95538 1.60582 1.20835 1.00956 1.48784 1.22377 0.95365 0.90557 1.00798 1.22279 0.92532 0.92203 0.88665 0.88479 1.22742 0.96764 0.97929 0.92760 1.63922 1.21351 1.36542 1.02888 1.22837 0.98248 0.90616 0.96762 1.22555 0.99408 0.99700 0.94214 1.22123 0.96302 1.00382 0.96420 1.23228 0.94067 0.98855 0.92272 0.92734 1.22457 0.97200 0.93423 0.86693 1.87920 1.35855 1.91431 1.13201 0.93013 0.95618 0.99897 0.85870 0.90337 0.96238 0.89759 0.94323 0.90162 0.94490 0.91573 0.90816 0.91264 0.90415 0.89076 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.98 9.32 -34.44 -0.32 -15.30 16 8 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 9 C 0.20 5.36 5.44 -4.98 -0.03 5.33 16 10 N -0.68 -15.48 6.35 -115.06 -0.73 -16.21 16 11 C 0.04 0.74 4.83 -3.82 -0.02 0.73 16 12 C 0.10 1.59 3.43 -26.33 -0.09 1.50 16 13 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 14 C 0.03 0.35 5.48 -4.11 -0.02 0.33 16 15 N -0.52 -6.80 4.25 -224.31 -0.95 -7.75 16 16 C 0.04 0.45 6.74 -2.60 -0.02 0.44 16 17 C -0.12 -1.12 7.05 -24.41 -0.17 -1.29 16 18 C -0.11 -1.15 6.68 -25.44 -0.17 -1.32 16 19 C 0.02 0.30 2.65 -66.81 -0.18 0.12 16 20 H 0.05 0.67 8.02 -51.93 -0.42 0.25 16 21 C 0.08 1.16 6.28 36.74 0.23 1.39 16 22 O -0.37 -6.23 10.34 -35.23 -0.36 -6.59 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H -0.02 -0.48 8.14 -51.93 -0.42 -0.91 16 26 H 0.33 7.08 8.72 -39.29 -0.34 6.73 16 27 H 0.08 1.59 6.45 -51.93 -0.34 1.26 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.04 0.47 8.04 -51.93 -0.42 0.05 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.19 6.91 -51.93 -0.36 0.83 16 LS Contribution 300.30 15.07 4.53 4.53 Total: -1.00 -31.71 300.30 -9.17 -40.88 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -6.48 Total: 1.37 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -0.88 Total: -6.58 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.95 Total: -50.81 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.36 Total: -6.59 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.71 -9.17 -40.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085790607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.408 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds