Wall clock time and date at job start Sun Mar 29 2020 22:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00050 * 2 1 4 4 H 1.48503 * 109.47079 * 270.00388 * 3 2 1 5 5 H 1.48503 * 109.46886 * 30.00428 * 3 2 1 6 6 H 1.48497 * 109.47209 * 150.00110 * 3 2 1 7 7 C 1.38816 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99891 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99816 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00100 * 174.84526 * 9 7 2 11 11 H 1.09001 * 109.47146 * 39.04761 * 10 9 7 12 12 C 1.53000 * 109.46993 * 279.05078 * 10 9 7 13 13 C 1.50704 * 109.47360 * 173.70179 * 12 10 9 14 14 N 1.34774 * 120.00102 * 173.86589 * 13 12 10 15 15 O 1.21284 * 119.99765 * 353.86902 * 13 12 10 16 16 C 1.52999 * 109.47332 * 159.05024 * 10 9 7 17 17 C 1.52998 * 109.47324 * 60.00077 * 16 10 9 18 18 C 1.52998 * 109.47694 * 180.02562 * 17 16 10 19 19 C 1.53005 * 109.46945 * 59.99431 * 18 17 16 20 20 C 1.52998 * 109.47389 * 300.00756 * 19 18 17 21 21 C 1.52999 * 109.47324 * 59.99715 * 20 19 18 22 22 H 0.97000 * 120.00182 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00235 * 354.83927 * 9 7 2 24 24 H 1.08998 * 109.47209 * 53.70336 * 12 10 9 25 25 H 1.08996 * 109.47033 * 293.70196 * 12 10 9 26 26 H 0.96994 * 120.00342 * 0.02562 * 14 13 12 27 27 H 0.97008 * 119.99590 * 180.02562 * 14 13 12 28 28 H 1.09004 * 109.47086 * 179.97438 * 16 10 9 29 29 H 1.09004 * 109.46893 * 299.99940 * 17 16 10 30 30 H 1.08999 * 109.47379 * 59.99732 * 17 16 10 31 31 H 1.08996 * 109.47004 * 300.00226 * 18 17 16 32 32 H 1.09001 * 109.47590 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47285 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.46919 * 60.00515 * 19 18 17 35 35 H 1.09004 * 109.46893 * 299.99775 * 20 19 18 36 36 H 1.08999 * 109.47379 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.46757 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47199 * 59.99881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4658 0.1134 11 1 3.6028 -3.2344 -0.4680 12 6 4.1700 -2.8917 1.5818 13 6 4.7857 -4.2634 1.6832 14 7 5.0531 -4.7944 2.8927 15 8 5.0407 -4.8895 0.6762 16 6 5.5339 -2.2808 -0.4204 17 6 6.2488 -1.2020 0.3956 18 6 7.6705 -1.0166 -0.1385 19 6 7.6120 -0.5905 -1.6069 20 6 6.8971 -1.6693 -2.4229 21 6 5.4755 -1.8547 -1.8887 22 1 -0.4850 0.8400 0.0004 23 1 3.8647 -0.3655 -0.0748 24 1 3.1610 -2.9151 1.9934 25 1 4.7749 -2.1795 2.1430 26 1 4.8489 -4.2938 3.6980 27 1 5.4498 -5.6772 2.9579 28 1 6.0790 -3.2210 -0.3356 29 1 5.7038 -0.2618 0.3112 30 1 6.2901 -1.5054 1.4418 31 1 8.2157 -1.9566 -0.0545 32 1 8.1796 -0.2477 0.4426 33 1 8.6248 -0.4579 -1.9874 34 1 7.0668 0.3497 -1.6909 35 1 7.4423 -2.6094 -2.3389 36 1 6.8551 -1.3656 -3.4689 37 1 4.9664 -2.6236 -2.4698 38 1 4.9303 -0.9146 -1.9727 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097373946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:29 Heat of formation + Delta-G solvation = -56.413292 kcal Electronic energy + Delta-G solvation = -18356.759420 eV Core-core repulsion = 15619.091898 eV Total energy + Delta-G solvation = -2737.667522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.64389 -38.13406 -35.04295 -33.38331 -32.22064 -30.47095 -29.85292 -28.78538 -24.44149 -22.54111 -22.15781 -20.93790 -19.74319 -18.67059 -17.68562 -16.90410 -16.38064 -15.44832 -14.67439 -14.41104 -14.06702 -13.79544 -13.61809 -13.48412 -13.13710 -12.53446 -12.39731 -12.21197 -11.76151 -11.31936 -11.22003 -10.95564 -10.76071 -10.70921 -10.55054 -10.24473 -10.04456 -9.70421 -9.55175 -9.53384 -9.38596 -9.34071 -8.88320 -7.25119 -5.76390 -3.11422 3.01320 3.36705 3.39958 3.45106 3.85775 4.59266 4.98839 5.04140 5.07296 5.24029 5.44632 5.57690 5.59316 5.63918 5.75223 5.78328 5.85519 5.88654 5.95824 5.98561 6.09787 6.25119 6.32497 6.42332 6.45967 6.53909 6.62338 6.70812 6.73587 6.94905 7.04238 7.08113 7.56871 8.03505 8.43413 8.57373 9.23173 9.95389 10.16432 11.42022 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.010378 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.913109 B = 2697.394995 C = 3778.976662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.742 5.742 10 C 0.202 3.798 11 H 0.063 0.937 12 C -0.165 4.165 13 C 0.519 3.481 14 N -0.866 5.866 15 O -0.546 6.546 16 C -0.093 4.093 17 C -0.118 4.118 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.108 4.108 22 H 0.259 0.741 23 H 0.361 0.639 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.399 0.601 27 H 0.392 0.608 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.947 -4.157 3.692 15.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.385 5.385 10 C 0.092 3.908 11 H 0.081 0.919 12 C -0.208 4.208 13 C 0.305 3.695 14 N -0.429 5.429 15 O -0.423 6.423 16 C -0.112 4.112 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.146 4.146 22 H 0.069 0.931 23 H 0.196 0.804 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.226 0.774 27 H 0.222 0.778 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 14.773 -4.440 2.913 15.698 hybrid contribution 0.514 1.147 0.654 1.417 sum 15.286 -3.293 3.567 16.039 Atomic orbital electron populations 1.69700 1.05099 1.25732 1.57599 1.24669 0.95160 0.97052 1.02111 0.86644 0.79340 0.85275 0.77878 1.21079 1.21845 1.20178 1.19103 0.80724 0.94631 1.42729 0.89196 1.42869 1.03853 1.02889 1.88881 1.19937 0.90934 0.89285 0.90684 0.91891 1.22621 1.02303 0.91709 1.04140 1.21175 0.76676 0.88941 0.82700 1.44055 1.67744 1.22288 1.08822 1.90681 1.52733 1.63204 1.35652 1.21451 0.96369 0.98569 0.94788 1.21661 0.95126 0.99818 0.98908 1.21521 0.97329 1.00642 0.95934 1.21533 0.99651 0.99019 0.95455 1.21549 0.96930 0.98514 0.98606 1.21479 0.95385 1.02179 0.95531 0.93120 0.80448 0.88221 0.89656 0.77351 0.77788 0.90091 0.91917 0.92379 0.92425 0.92724 0.92794 0.92150 0.92462 0.92595 0.92060 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.77 27.69 -169.99 -4.71 17.06 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.38 6.60 56.52 0.37 -6.01 16 7 C -0.24 -6.64 10.32 -15.06 -0.16 -6.79 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 N -0.74 -16.95 4.22 -53.43 -0.23 -17.18 16 10 C 0.20 3.94 1.74 -67.93 -0.12 3.83 16 11 H 0.06 1.39 7.78 -51.93 -0.40 0.99 16 12 C -0.16 -2.76 5.23 -27.88 -0.15 -2.90 16 13 C 0.52 8.06 7.71 -10.98 -0.08 7.98 16 14 N -0.87 -9.32 8.87 31.22 0.28 -9.04 16 15 O -0.55 -10.35 15.13 5.55 0.08 -10.26 16 16 C -0.09 -1.57 1.79 -90.62 -0.16 -1.73 16 17 C -0.12 -1.79 4.69 -26.73 -0.13 -1.92 16 18 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 19 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 20 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 21 C -0.11 -1.81 5.04 -26.73 -0.13 -1.95 16 22 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 23 H 0.36 8.15 3.63 -40.82 -0.15 8.01 16 24 H 0.10 1.79 8.08 -51.93 -0.42 1.37 16 25 H 0.09 1.29 6.11 -51.93 -0.32 0.97 16 26 H 0.40 3.23 8.83 -40.82 -0.36 2.87 16 27 H 0.39 3.65 8.93 -40.82 -0.36 3.29 16 28 H 0.08 1.41 6.29 -51.93 -0.33 1.08 16 29 H 0.06 1.06 6.53 -51.93 -0.34 0.72 16 30 H 0.06 0.83 6.29 -51.93 -0.33 0.50 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.24 7.34 -51.93 -0.38 0.86 16 LS Contribution 293.68 15.07 4.43 4.43 Total: -1.00 -31.99 293.68 -6.80 -38.79 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -5.93 Total: 13.00 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.50 Total: -8.60 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.83 Total: -54.42 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.99 -6.80 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097373946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.620 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds