Wall clock time and date at job start Sun Mar 29 2020 22:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00050 * 2 1 4 4 H 1.48503 * 109.47079 * 270.00388 * 3 2 1 5 5 H 1.48503 * 109.46886 * 30.00428 * 3 2 1 6 6 H 1.48497 * 109.47209 * 150.00110 * 3 2 1 7 7 C 1.38816 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99891 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99816 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00100 * 174.84526 * 9 7 2 11 11 H 1.09001 * 109.47146 * 39.04761 * 10 9 7 12 12 C 1.53000 * 109.46993 * 279.05078 * 10 9 7 13 13 C 1.50704 * 109.47360 * 173.70179 * 12 10 9 14 14 N 1.34774 * 120.00102 * 173.86589 * 13 12 10 15 15 O 1.21284 * 119.99765 * 353.86902 * 13 12 10 16 16 C 1.52999 * 109.47332 * 159.05024 * 10 9 7 17 17 C 1.52998 * 109.47324 * 60.00077 * 16 10 9 18 18 C 1.52998 * 109.47694 * 180.02562 * 17 16 10 19 19 C 1.53005 * 109.46945 * 59.99431 * 18 17 16 20 20 C 1.52998 * 109.47389 * 300.00756 * 19 18 17 21 21 C 1.52999 * 109.47324 * 59.99715 * 20 19 18 22 22 H 0.97000 * 120.00182 * 359.97438 * 1 2 3 23 23 H 0.97003 * 120.00235 * 354.83927 * 9 7 2 24 24 H 1.08998 * 109.47209 * 53.70336 * 12 10 9 25 25 H 1.08996 * 109.47033 * 293.70196 * 12 10 9 26 26 H 0.96994 * 120.00342 * 0.02562 * 14 13 12 27 27 H 0.97008 * 119.99590 * 180.02562 * 14 13 12 28 28 H 1.09004 * 109.47086 * 179.97438 * 16 10 9 29 29 H 1.09004 * 109.46893 * 299.99940 * 17 16 10 30 30 H 1.08999 * 109.47379 * 59.99732 * 17 16 10 31 31 H 1.08996 * 109.47004 * 300.00226 * 18 17 16 32 32 H 1.09001 * 109.47590 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.47285 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.46919 * 60.00515 * 19 18 17 35 35 H 1.09004 * 109.46893 * 299.99775 * 20 19 18 36 36 H 1.08999 * 109.47379 * 179.97438 * 20 19 18 37 37 H 1.08996 * 109.46757 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47199 * 59.99881 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4658 0.1134 11 1 3.6028 -3.2344 -0.4680 12 6 4.1700 -2.8917 1.5818 13 6 4.7857 -4.2634 1.6832 14 7 5.0531 -4.7944 2.8927 15 8 5.0407 -4.8895 0.6762 16 6 5.5339 -2.2808 -0.4204 17 6 6.2488 -1.2020 0.3956 18 6 7.6705 -1.0166 -0.1385 19 6 7.6120 -0.5905 -1.6069 20 6 6.8971 -1.6693 -2.4229 21 6 5.4755 -1.8547 -1.8887 22 1 -0.4850 0.8400 0.0004 23 1 3.8647 -0.3655 -0.0748 24 1 3.1610 -2.9151 1.9934 25 1 4.7749 -2.1795 2.1430 26 1 4.8489 -4.2938 3.6980 27 1 5.4498 -5.6772 2.9579 28 1 6.0790 -3.2210 -0.3356 29 1 5.7038 -0.2618 0.3112 30 1 6.2901 -1.5054 1.4418 31 1 8.2157 -1.9566 -0.0545 32 1 8.1796 -0.2477 0.4426 33 1 8.6248 -0.4579 -1.9874 34 1 7.0668 0.3497 -1.6909 35 1 7.4423 -2.6094 -2.3389 36 1 6.8551 -1.3656 -3.4689 37 1 4.9664 -2.6236 -2.4698 38 1 4.9303 -0.9146 -1.9727 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097373946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:28 Heat of formation + Delta-G solvation = -79.739220 kcal Electronic energy + Delta-G solvation = -18357.770908 eV Core-core repulsion = 15619.091898 eV Total energy + Delta-G solvation = -2738.679010 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98934 -39.39585 -36.66860 -34.54357 -34.14366 -31.78284 -31.54261 -30.09604 -26.16776 -24.19423 -23.39210 -22.20740 -20.99214 -20.07670 -19.71934 -18.01746 -17.69596 -16.75306 -16.50640 -15.80192 -15.43050 -15.27998 -15.00704 -14.72378 -14.69031 -14.28634 -13.84477 -13.49048 -13.17873 -13.01112 -12.86636 -12.52034 -12.26108 -12.01199 -11.92993 -11.82167 -11.71510 -11.27018 -11.08014 -10.83153 -10.74711 -10.72486 -10.51354 -9.28706 -7.99569 -5.32423 1.38281 1.41212 1.48634 1.74367 2.50070 2.71498 3.32317 3.71703 3.79424 3.89103 3.91861 4.21910 4.35119 4.38115 4.40985 4.51502 4.64548 4.70613 4.73024 4.76356 4.87253 5.04368 5.15086 5.15588 5.27257 5.32918 5.36991 5.40663 5.45336 5.61578 5.69723 5.82603 6.01013 6.24792 6.53808 7.11214 7.45273 7.87366 8.09146 9.22201 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.016783 B = 0.010378 C = 0.007408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.913109 B = 2697.394995 C = 3778.976662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.060 4.060 3 Si 0.946 3.054 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.246 1.246 7 C -0.225 4.225 8 H 0.052 0.948 9 N -0.739 5.739 10 C 0.197 3.803 11 H 0.026 0.974 12 C -0.157 4.157 13 C 0.522 3.478 14 N -0.838 5.838 15 O -0.584 6.584 16 C -0.082 4.082 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.111 4.111 22 H 0.256 0.744 23 H 0.367 0.633 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.416 0.584 27 H 0.406 0.594 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.184 -3.471 4.853 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.252 4.252 3 Si 0.773 3.227 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.170 1.170 7 C -0.356 4.356 8 H 0.070 0.930 9 N -0.383 5.383 10 C 0.088 3.912 11 H 0.044 0.956 12 C -0.200 4.200 13 C 0.308 3.692 14 N -0.402 5.402 15 O -0.464 6.464 16 C -0.101 4.101 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.148 4.148 22 H 0.065 0.935 23 H 0.202 0.798 24 H 0.102 0.898 25 H 0.128 0.872 26 H 0.246 0.754 27 H 0.238 0.762 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 18.071 -3.793 4.134 18.922 hybrid contribution -0.532 0.777 0.290 0.985 sum 17.540 -3.016 4.424 18.339 Atomic orbital electron populations 1.69885 1.07137 1.26510 1.59953 1.25434 0.95968 1.00933 1.02844 0.85543 0.79069 0.80037 0.78007 1.20945 1.22312 1.16998 1.18991 0.82695 0.93145 1.40748 0.92962 1.42749 1.02145 1.04361 1.89041 1.20015 0.92009 0.86837 0.92342 0.95603 1.22359 1.02209 0.93577 1.01826 1.20822 0.76611 0.88285 0.83517 1.43715 1.65921 1.22700 1.07871 1.90679 1.54636 1.63847 1.37278 1.21331 0.94373 0.99410 0.95024 1.21655 0.96310 0.98013 0.99390 1.21509 0.95684 1.01814 0.95995 1.21554 1.00686 0.98022 0.95388 1.21515 0.94799 0.99545 0.99252 1.21478 0.97317 1.00397 0.95657 0.93466 0.79823 0.89788 0.87185 0.75351 0.76247 0.90130 0.93420 0.91087 0.91539 0.90751 0.90371 0.92841 0.91699 0.91731 0.93909 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.07 13.97 21.65 0.30 -62.76 16 2 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 3 Si 0.95 45.02 27.69 68.60 1.90 46.92 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.25 -10.37 6.60 99.48 0.66 -9.71 16 7 C -0.22 -12.72 10.32 84.03 0.87 -11.85 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 9 N -0.74 -33.98 4.22 -322.95 -1.36 -35.35 16 10 C 0.20 7.78 1.74 44.99 0.08 7.86 16 11 H 0.03 1.21 7.78 -2.39 -0.02 1.19 16 12 C -0.16 -5.13 5.23 29.85 0.16 -4.98 16 13 C 0.52 15.52 7.71 87.66 0.68 16.20 16 14 N -0.84 -15.79 8.87 -173.53 -1.54 -17.33 16 15 O -0.58 -21.90 15.13 -3.04 -0.05 -21.94 16 16 C -0.08 -2.71 1.79 -10.79 -0.02 -2.73 16 17 C -0.12 -3.22 4.69 30.59 0.14 -3.07 16 18 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 19 C -0.12 -2.68 5.92 30.60 0.18 -2.50 16 20 C -0.11 -2.92 5.92 30.59 0.18 -2.74 16 21 C -0.11 -3.69 5.04 30.59 0.15 -3.53 16 22 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.37 16.16 3.63 -92.71 -0.34 15.83 16 24 H 0.08 3.02 8.08 -2.39 -0.02 3.00 16 25 H 0.11 3.03 6.11 -2.39 -0.01 3.01 16 26 H 0.42 5.36 8.83 -92.71 -0.82 4.54 16 27 H 0.41 6.36 8.93 -92.70 -0.83 5.53 16 28 H 0.08 2.71 6.29 -2.38 -0.02 2.70 16 29 H 0.05 1.47 6.53 -2.38 -0.02 1.46 16 30 H 0.07 1.77 6.29 -2.39 -0.02 1.75 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.73 7.34 -2.39 -0.02 1.72 16 Total: -1.00 -71.54 293.68 1.36 -70.18 By element: Atomic # 1 Polarization: 33.97 SS G_CDS: -0.96 Total: 33.02 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 3.07 Total: -12.73 kcal Atomic # 7 Polarization: -112.84 SS G_CDS: -2.60 Total: -115.44 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.90 Total: 46.92 kcal Total: -71.54 1.36 -70.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097373946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.559 kcal (2) G-P(sol) polarization free energy of solvation -71.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds